mRNA_P-littoralis_Contig687.34.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig687.34.1
Unique NamemRNA_P-littoralis_Contig687.34.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig687.34.1 vs. uniprot
Match: A0A6H5JG59_9PHAE (NADH-cytochrome b5 reductase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG59_9PHAE)

HSP 1 Score: 457 bits (1177), Expect = 6.290e-158
Identity = 221/248 (89.11%), Postives = 236/248 (95.16%), Query Frame = 1 
Query:    1 EFREFPLREIEDMTHNVRRFRVGLPSEEHVMGMKTASCIVIKGKGKDGSVAVRPYTPTTTNDTKGHFDLVIKVYPDGNVSSHMFGLKVGDMVEVKGPFPKFDYSTNVKKEIGMIAGGTGITPMLQVLQELLLNPEDKTKATLLFANQTSSDIMLKAEIDKLAAEHDNFEVVYIVDKQEEGWTGETGHVNASLIEKYLPKPSGDSMIFVCGPPGMVNALSGPKNEDKSQGEVAGVLKGLGYTSENVYKF 744
            EFR+FPLREIEDMTHNVRRFR+GLPSEEHVMGMKTASCIV+KGKGKDGSVAVRPYTPTTTNDTKGHFDLVIKVYP+GNVSSH+F LKVGD V VKGPFPKFDYS NVKKEIGMIAGGTGITPMLQVLQELLLNPEDKTK TLLFAN T++DIMLKAEIDKLAAEHDNF+VVY+VDK EEGWTG TGHVNASLIE +LPKPSGDS+IFVCGPPGM+NA+SGPKNEDKSQGE+ GVLK LGYTS+ VYKF
Sbjct:   64 EFRDFPLREIEDMTHNVRRFRIGLPSEEHVMGMKTASCIVVKGKGKDGSVAVRPYTPTTTNDTKGHFDLVIKVYPEGNVSSHLFSLKVGDTVAVKGPFPKFDYSPNVKKEIGMIAGGTGITPMLQVLQELLLNPEDKTKVTLLFANVTAADIMLKAEIDKLAAEHDNFDVVYVVDKAEEGWTGATGHVNASLIETHLPKPSGDSVIFVCGPPGMMNAISGPKNEDKSQGEIGGVLKALGYTSDMVYKF 311
[Close]
BLAST of mRNA_P-littoralis_Contig687.34.1 vs. uniprot
Match: A0A835ZLM4_9STRA (NADH-cytochrome b5 reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLM4_9STRA)

HSP 1 Score: 300 bits (768), Expect = 2.810e-96
Identity = 141/248 (56.85%), Postives = 186/248 (75.00%), Query Frame = 1 
Query:    1 EFREFPLREIEDMTHNVRRFRVGLPSEEHVMGMKTASCIVIKGKGKDGSVAVRPYTPTTTNDTKGHFDLVIKVYPDGNVSSHMFGLKVGDMVEVKGPFPKFDYSTNVKKEIGMIAGGTGITPMLQVLQELLLNPEDKTKATLLFANQTSSDIMLKAEIDKLAAEHDNFEVVYIVDKQEEGWTGETGHVNASLIEKYLPKPSGDSMIFVCGPPGMVNALSGPKNEDKSQGEVAGVLKGLGYTSENVYKF 744
            E+REFP+ E+  ++H+ + F++ LPS +H  G++TASC++++G G DG   VRPYTPTT N T GHFDLVIK YP+GNVSS+M GLK GD + VKGPFPK   + N+K+ IGMIAGGTGITPM Q + ELL   +D T  TLLF N+T SDI+LKAE+D LAA H  F++VYIVDK +  W G +G++ A+ I+KY+P PS D+M+FVCGPP ++ ++SG K +DKSQG + G LK  G+T E VYKF
Sbjct:   46 EWREFPVSEVHTLSHDTKMFKIQLPSSKHETGLETASCLLVQGTGLDGKPTVRPYTPTTLNKTLGHFDLVIKRYPEGNVSSYMHGLKPGDKLMVKGPFPKLKVTPNMKRNIGMIAGGTGITPMYQCILELLDASDDATNITLLFGNRTPSDILLKAELDALAATHPRFKLVYIVDKPDSSWKGLSGYITANEIQKYMPPPSADNMVFVCGPPPLMKSISGDKAKDKSQGPLEGALKACGFTEEMVYKF 293
[Close]
BLAST of mRNA_P-littoralis_Contig687.34.1 vs. uniprot
Match: A0A836C9R3_9STRA (NADH-cytochrome b5 reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9R3_9STRA)

HSP 1 Score: 285 bits (729), Expect = 1.960e-90
Identity = 139/249 (55.82%), Postives = 179/249 (71.89%), Query Frame = 1 
Query:    1 EFREFPLREIEDMTHNVRRFRVGLPSEEHVMGMKTASCIVIKGKGKDGSVAV-RPYTPTTTNDTKGHFDLVIKVYPDGNVSSHMFGLKVGDMVEVKGPFPKFDYSTNVKKEIGMIAGGTGITPMLQVLQELLLNPEDKTKATLLFANQTSSDIMLKAEIDKLAAEHDNFEVVYIVDKQEEGWTGETGHVNASLIEKYLPKPSGDSMIFVCGPPGMVNALSGPKNEDKSQGEVAGVLKGLGYTSENVYKF 744
            E+R+F ++EI  ++H+ ++F V LPSEEH +GM TASC++++G G DG+  V RPYTPT+ N TKGHF+LVIK Y  G VSS+M GL VGD ++VKGPFPK     N+KK IG+IAGGTGITPM Q +QELL    D T+  LL+ N+T  DI+LK+E+D LA ++  F VVY V +  +GWTG  GH+     ++YLP PS D M+FVCGPP ++ A+SG K  DKSQG V GVLK LGYT   VYKF
Sbjct:   43 EWRQFTVKEITPLSHDTKKFTVALPSEEHELGMVTASCLMVEGTGLDGTSQVARPYTPTSLNGTKGHFELVIKKYDKGQVSSYMHGLSVGDAIKVKGPFPKIKLDPNMKKRIGLIAGGTGITPMYQCIQELLEADGDATEMVLLYGNKTPKDILLKSELDALATKYPRFSVVYKVGEATDGWTGPVGHIGLEDCKQYLPPPSDDHMVFVCGPPPLMKAISGDKGPDKSQGAVDGVLKELGYTETQVYKF 291
[Close]
BLAST of mRNA_P-littoralis_Contig687.34.1 vs. uniprot
Match: A0A137P6R6_CONC2 (NADH-cytochrome b5 reductase n=1 Tax=Conidiobolus coronatus (strain ATCC 28846 / CBS 209.66 / NRRL 28638) TaxID=796925 RepID=A0A137P6R6_CONC2)

HSP 1 Score: 285 bits (730), Expect = 5.250e-90
Identity = 139/250 (55.60%), Postives = 182/250 (72.80%), Query Frame = 1 
Query:    1 EFREFPLREIEDMTHNVRRFRVGLPSEEHVMGMKTASCIVIKGKGKDGSVAVRPYTPTTTNDTKGHFDLVIKVYPDGNVSSHMFGLKVGDMVEVKGPFPKFDYSTNVKKEIGMIAGGTGITPMLQVLQELLLNPEDKTKATLLFANQTSSDIMLKAEIDKLAAEH-DNFEVVYIVDKQEEGWTGETGHVNASLIEKYLP-KPSGDSMIFVCGPPGMVNALSGPKNEDKSQGEVAGVLKGLGYTSENVYKF 744
            EF+ F L+E++D+ +N + FR  LP +   + +  ASC+V +  GK+G   +RPYTPT+  + KGHFD +IK Y  G +S+H+  LKVGD +EVKGPFPK+ Y  N   E G+IAGGTGITPMLQ+++++L NP DKTK  L+FAN T+ DI+LK E+DKLA +H D F+V Y++ KQE GWTG+ G V   LI+K L    + DSM+FVCGP  M+N LSGPKN DKSQGE+ G+LK LGYTSENVYKF
Sbjct:   84 EFKSFKLKEVQDINYNTKLFRFELPVDRS-LDLPVASCVVTRAPGKNGKNVIRPYTPTSEENAKGHFDFIIKHYEGGPMSTHIHNLKVGDTLEVKGPFPKYFYKANTIDEAGLIAGGTGITPMLQLIRKILDNPADKTKINLIFANNTTKDILLKDELDKLAKQHADRFKVKYVIAKQESGWTGDVGFVTKDLIKKTLQGSQNKDSMVFVCGPDPMINVLSGPKNPDKSQGELGGILKELGYTSENVYKF 332
[Close]
BLAST of mRNA_P-littoralis_Contig687.34.1 vs. uniprot
Match: A0A7S2V2T1_9STRA (NADH-cytochrome b5 reductase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2T1_9STRA)

HSP 1 Score: 279 bits (714), Expect = 4.040e-88
Identity = 136/249 (54.62%), Postives = 175/249 (70.28%), Query Frame = 1 
Query:    1 EFREFPLREIEDMTHNVRRFRVGLPSEEHVMGMKTASCIVIKGKGKDGSVA-VRPYTPTTTNDTKGHFDLVIKVYPDGNVSSHMFGLKVGDMVEVKGPFPKFDYSTNVKKEIGMIAGGTGITPMLQVLQELLLNPEDKTKATLLFANQTSSDIMLKAEIDKLAAEHDNFEVVYIVDKQEEGWTGETGHVNASLIEKYLPKPSGDSMIFVCGPPGMVNALSGPKNEDKSQGEVAGVLKGLGYTSENVYKF 744
            E+R FPL +I ++T N   FR  LPS+EH MG+  ASCI +K   K+G    +RPYTPTT ND KG+FDL++K YP+G VSS+   LK+GD + VKGP+ K  Y  N+ K IGMIAGGTGITPMLQ+L+ +L NP+DKT+  L+FAN T  DIM K  +D++A E+ NF V Y+V K    W G  G V+   +E+ +P P   +M+FVCGPPGM+ ++SG K EDKSQGEV+GVLK  GYTS  VYKF
Sbjct:   47 EWRSFPLVQIRELTPNTSLFRFNLPSQEHEMGLSVASCIEVKAPPKEGGKPMIRPYTPTTNNDVKGYFDLIVKDYPNGKVSSYFHNLKIGDSILVKGPYDKLQYKPNMFKRIGMIAGGTGITPMLQMLKVILSNPKDKTEVHLVFANNTEDDIMQKNVLDQMAVEYHNFHVHYVVAKPRPSWKGGVGFVDLDTVERKIPAPEEGTMVFVCGPPGMMESISGDKAEDKSQGEVSGVLKERGYTSGMVYKF 295
[Close]
BLAST of mRNA_P-littoralis_Contig687.34.1 vs. uniprot
Match: A0A137P6R8_CONC2 (Ferredoxin reductase-like protein (Fragment) n=1 Tax=Conidiobolus coronatus (strain ATCC 28846 / CBS 209.66 / NRRL 28638) TaxID=796925 RepID=A0A137P6R8_CONC2)

HSP 1 Score: 278 bits (710), Expect = 4.170e-88
Identity = 133/251 (52.99%), Postives = 184/251 (73.31%), Query Frame = 1 
Query:    1 EFREFPLREIEDMTHNVRRFRVGLPSEEHVMGMKTASCIVIKGKGKDGSVAVRPYTPTTTNDTKGHFDLVIKVYPDGNVSSHMFGLKVGDMVEVKGPFPKFDYSTNVKKEIGMIAGGTGITPMLQVLQELLLNPEDKTKATLLFANQTSSDIMLKAEIDKLAAEH-DNFEVVYIVDKQEEGWTGETGHVNASLIEKYLPKPSGD--SMIFVCGPPGMVNALSGPKNEDKSQGEVAGVLKGLGYTSENVYKF 744
            EF+ F L+EI+ ++H+ + FR  LP + + +G+  ASC++ K  GKDG   +RPYTPT+    +G+FD +IK Y  G +S H+  LKVGD +EVKGPFPK+ Y+ N   EIG+IAGGTGITPMLQ+++++L NP+DKTK   +FAN+T+ DI+LK E+DKLA +H D F++ YI+  +E GW+G+ GHVN  +I+  L K S D  S++FVCGPPGMV  + GPK +D SQGEV G+LK LGY+ +NVYKF
Sbjct:    6 EFKAFKLKEIQSISHDTKLFRFELPPDSN-LGLPIASCVLTKAPGKDGKDVMRPYTPTSRETDRGYFDFIIKRYESGTMSKHIHSLKVGDTLEVKGPFPKYPYTANTHSEIGLIAGGTGITPMLQLIRKVLDNPQDKTKINFIFANRTTKDILLKDELDKLAKQHPDRFKIKYIISNKEPGWSGDVGHVNKDMIKNTL-KGSADKQSIVFVCGPPGMVELVCGPKAKDNSQGEVKGILKDLGYSGDNVYKF 254
[Close]
BLAST of mRNA_P-littoralis_Contig687.34.1 vs. uniprot
Match: A0A6S9JGT0_HETAK (NADH-cytochrome b5 reductase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9JGT0_HETAK)

HSP 1 Score: 276 bits (706), Expect = 6.040e-87
Identity = 127/248 (51.21%), Postives = 183/248 (73.79%), Query Frame = 1 
Query:    1 EFREFPLREIEDMTHNVRRFRVGLPSEEHVMGMKTASCIVIKGKGKDGSVAVRPYTPTTTNDTKGHFDLVIKVYPDGNVSSHMFGLKVGDMVEVKGPFPKFDYSTNVKKEIGMIAGGTGITPMLQVLQELLLNPEDKTKATLLFANQTSSDIMLKAEIDKLAAEHDNFEVVYIVDKQEEGWTGETGHVNASLIEKYLPKPSGDSMIFVCGPPGMVNALSGPKNEDKSQGEVAGVLKGLGYTSENVYKF 744
            E+R F L ++ ++TH+   FR  LP+ +H MGMKT+SCI+++G+ + GS+  RPYTPT+TN+ KG FDL++K YP+GNVSS++ GLK+GD + VKGP+ K +Y  N+ K IGMIAGG+GITPM+Q+ +E+L NP+D T+ +L+FAN T  DIM KA +D++AA++ NF V Y V     GW    G  +A +IEK +P P   +M+FVCGP GM++A+ GPK ++ +QGE+ G+LK  G+T+E VYKF
Sbjct:   46 EWRSFKLIQVRELTHDTSLFRFALPTTQHEMGMKTSSCIMVQGETRTGSMVARPYTPTSTNEQKGFFDLIVKNYPNGNVSSYIHGLKIGDNLNVKGPYMKLEYKPNMFKRIGMIAGGSGITPMIQLCREILSNPDDTTEISLIFANNTEGDIMQKAWLDQMAAQYHNFRVYYTVRDAPAGWRQGQGVCDAEMIEKKMPAPEAGTMVFVCGPDGMMDAVCGPKGKNYTQGELQGLLKERGFTAEQVYKF 293
[Close]
BLAST of mRNA_P-littoralis_Contig687.34.1 vs. uniprot
Match: A0A1Y1Y340_9FUNG (NADH-cytochrome b5 reductase n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Y340_9FUNG)

HSP 1 Score: 274 bits (700), Expect = 1.580e-85
Identity = 135/254 (53.15%), Postives = 179/254 (70.47%), Query Frame = 1 
Query:    1 EFREFPLREIEDMTHNVRRFRVGLPSEEHVMGMKTASCIVIK-----GKGKDGSVAVRPYTPTTTNDTKGHFDLVIKVYPDGNVSSHMFGLKVGDMVEVKGPFPKFDYSTNVKKEIGMIAGGTGITPMLQVLQELLLNPEDKTKATLLFANQTSSDIMLKAEIDKLAAEH-DNFEVVYIVDKQEEGWTGETGHVNASLIEKYLPKPSGDSMIFVCGPPGMVNALSGPKNEDKSQGEVAGVLKGLGYTSENVYKF 744
            +F +F L E+E++ HN + FR  LP  E  +GM  ASC++ K     GKG    V +RPYTPT+ +DT GHFD++IK YP+G +S H+  +K GD + VKGPFPK+ Y  N    IGMIAGGTGITPMLQV++++  NPEDKTK TL+FAN    DI+L+ E+DKLA EH + F++ Y +D   +GWT   G VNA +++ ++PKP+ D+M+FVCGP  MV +LSG KN DKSQG + G+LK LGYT  NVYKF
Sbjct:   82 QFIDFKLLEVEEINHNTKLFRFELPEGE-TLGMSVASCVITKVPKAGGKG----VIIRPYTPTSDDDTVGHFDMIIKKYPNGPMSEHIHNMKPGDTLAVKGPFPKYTYKPNTLSHIGMIAGGTGITPMLQVIRKVFKNPEDKTKITLVFANVNEDDILLRDELDKLAMEHPEQFKLYYTLDNAPKGWTQGQGRVNAEVVKDFMPKPAEDTMVFVCGPDPMVASLSGAKNPDKSQGALGGILKELGYTESNVYKF 330
[Close]
BLAST of mRNA_P-littoralis_Contig687.34.1 vs. uniprot
Match: A9RJM3_PHYPA (NADH-cytochrome b5 reductase n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9RJM3_PHYPA)

HSP 1 Score: 271 bits (693), Expect = 2.030e-85
Identity = 129/253 (50.99%), Postives = 182/253 (71.94%), Query Frame = 1 
Query:    1 EFREFPLREIEDMTHNVRRFRVGLPSEEHVMGMKTASCIVIK---GKGKDGS--VAVRPYTPTTTNDTKGHFDLVIKVYPDGNVSSHMFGLKVGDMVEVKGPFPKFDYSTNVKKEIGMIAGGTGITPMLQVLQELLLNPEDKTKATLLFANQTSSDIMLKAEIDKLAAEHDNFEVVYIVDKQEEGWTGETGHVNASLIEKYLPKPSGDSMIFVCGPPGMVNALSGPKNEDKSQGEVAGVLKGLGYTSENVYKF 744
            EF +F + E+ D+ HN + +R    S+E  +G+  ASC++ K   GK KDGS    +RPYTP +  D+KG+FDL++K+YP+G ++ H+  LK GD ++VKGP PK  Y+ N+KK+IGMIAGGTGITPMLQV+  ++ NPED T+ +L+FAN T +DI+LK+++D L+  H NF+V Y+VD     W G  G++N  ++ K LP PS D++I VCGPPG++N +SG K  D+SQGE+ G+LK LGYTSE VYKF
Sbjct:   12 EFVKFKVSEVRDVNHNTKLYRFTFDSQE-ALGLHVASCLITKAEIGKKKDGSPNYVIRPYTPISPPDSKGYFDLLVKIYPNGKMTQHLAQLKPGDTLDVKGPIPKLPYAPNMKKQIGMIAGGTGITPMLQVIDAIVSNPEDNTQVSLVFANTTPADILLKSKLDALSFAHPNFKVYYVVDSPTNDWKGGKGYINKDVLLKGLPSPSDDTLILVCGPPGLMNLISGDKAPDRSQGELVGLLKELGYTSEQVYKF 263
[Close]
BLAST of mRNA_P-littoralis_Contig687.34.1 vs. uniprot
Match: A0A2K1KNZ2_PHYPA (FAD-binding FR-type domain-containing protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1KNZ2_PHYPA)

HSP 1 Score: 271 bits (693), Expect = 2.750e-84
Identity = 129/253 (50.99%), Postives = 182/253 (71.94%), Query Frame = 1 
Query:    1 EFREFPLREIEDMTHNVRRFRVGLPSEEHVMGMKTASCIVIK---GKGKDGS--VAVRPYTPTTTNDTKGHFDLVIKVYPDGNVSSHMFGLKVGDMVEVKGPFPKFDYSTNVKKEIGMIAGGTGITPMLQVLQELLLNPEDKTKATLLFANQTSSDIMLKAEIDKLAAEHDNFEVVYIVDKQEEGWTGETGHVNASLIEKYLPKPSGDSMIFVCGPPGMVNALSGPKNEDKSQGEVAGVLKGLGYTSENVYKF 744
            EF +F + E+ D+ HN + +R    S+E  +G+  ASC++ K   GK KDGS    +RPYTP +  D+KG+FDL++K+YP+G ++ H+  LK GD ++VKGP PK  Y+ N+KK+IGMIAGGTGITPMLQV+  ++ NPED T+ +L+FAN T +DI+LK+++D L+  H NF+V Y+VD     W G  G++N  ++ K LP PS D++I VCGPPG++N +SG K  D+SQGE+ G+LK LGYTSE VYKF
Sbjct:   93 EFVKFKVSEVRDVNHNTKLYRFTFDSQE-ALGLHVASCLITKAEIGKKKDGSPNYVIRPYTPISPPDSKGYFDLLVKIYPNGKMTQHLAQLKPGDTLDVKGPIPKLPYAPNMKKQIGMIAGGTGITPMLQVIDAIVSNPEDNTQVSLVFANTTPADILLKSKLDALSFAHPNFKVYYVVDSPTNDWKGGKGYINKDVLLKGLPSPSDDTLILVCGPPGLMNLISGDKAPDRSQGELVGLLKELGYTSEQVYKF 344
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig687.34.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JG59_9PHAE6.290e-15889.11NADH-cytochrome b5 reductase n=1 Tax=Ectocarpus sp... [more]
A0A835ZLM4_9STRA2.810e-9656.85NADH-cytochrome b5 reductase n=1 Tax=Tribonema min... [more]
A0A836C9R3_9STRA1.960e-9055.82NADH-cytochrome b5 reductase n=1 Tax=Tribonema min... [more]
A0A137P6R6_CONC25.250e-9055.60NADH-cytochrome b5 reductase n=1 Tax=Conidiobolus ... [more]
A0A7S2V2T1_9STRA4.040e-8854.62NADH-cytochrome b5 reductase n=1 Tax=Fibrocapsa ja... [more]
A0A137P6R8_CONC24.170e-8852.99Ferredoxin reductase-like protein (Fragment) n=1 T... [more]
A0A6S9JGT0_HETAK6.040e-8751.21NADH-cytochrome b5 reductase n=1 Tax=Heterosigma a... [more]
A0A1Y1Y340_9FUNG1.580e-8553.15NADH-cytochrome b5 reductase n=1 Tax=Basidiobolus ... [more]
A9RJM3_PHYPA2.030e-8550.99NADH-cytochrome b5 reductase n=1 Tax=Physcomitrium... [more]
A0A2K1KNZ2_PHYPA2.750e-8450.99FAD-binding FR-type domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig687contigP-littoralis_Contig687:99406..105894 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog248742.XP_005645756.1
PFAMsFAD_binding_6,NAD_binding_1
Model size1338
Max annot lvl3041|Chlorophyta
KEGG koko:K00326
KEGG ReactionR00100
KEGG Pathwayko00520,map00520
Hectar predicted targeting categoryother localisation
Exons6
Evalue1.26e-82
EggNOG OGsCOG0543@1|root,KOG0534@2759|Eukaryota,37RUI@33090|Viridiplantae,34KKS@3041|Chlorophyta
EC1.6.2.2
DescriptionBelongs to the flavoprotein pyridine nucleotide cytochrome reductase family
Cds size711
COG categoryC
BRITEko00000,ko00001,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig687.34.1prot_P-littoralis_Contig687.34.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig687 99997..105858 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791425.0835435-UTR-P-littoralis_Contig687:99405..999961680791425.0835435-UTR-P-littoralis_Contig687:99405..99996Pylaiella littoralis U1_48UTRP-littoralis_Contig687 99406..99996 -
1680791425.2578251-UTR-P-littoralis_Contig687:105858..1058941680791425.2578251-UTR-P-littoralis_Contig687:105858..105894Pylaiella littoralis U1_48UTRP-littoralis_Contig687 105859..105894 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791425.0957463-CDS-P-littoralis_Contig687:99996..1000951680791425.0957463-CDS-P-littoralis_Contig687:99996..100095Pylaiella littoralis U1_48CDSP-littoralis_Contig687 99997..100095 -
1680791425.1090755-CDS-P-littoralis_Contig687:101824..1019531680791425.1090755-CDS-P-littoralis_Contig687:101824..101953Pylaiella littoralis U1_48CDSP-littoralis_Contig687 101825..101953 -
1680791425.131498-CDS-P-littoralis_Contig687:103625..1037891680791425.131498-CDS-P-littoralis_Contig687:103625..103789Pylaiella littoralis U1_48CDSP-littoralis_Contig687 103626..103789 -
1680791425.1461504-CDS-P-littoralis_Contig687:104238..1043141680791425.1461504-CDS-P-littoralis_Contig687:104238..104314Pylaiella littoralis U1_48CDSP-littoralis_Contig687 104239..104314 -
1680791425.1629915-CDS-P-littoralis_Contig687:105064..1051511680791425.1629915-CDS-P-littoralis_Contig687:105064..105151Pylaiella littoralis U1_48CDSP-littoralis_Contig687 105065..105151 -
1680791425.2182918-CDS-P-littoralis_Contig687:105702..1058581680791425.2182918-CDS-P-littoralis_Contig687:105702..105858Pylaiella littoralis U1_48CDSP-littoralis_Contig687 105703..105858 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig687.34.1

>prot_P-littoralis_Contig687.34.1 ID=prot_P-littoralis_Contig687.34.1|Name=mRNA_P-littoralis_Contig687.34.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=237bp
MTHNVRRFRVGLPSEEHVMGMKTASCIVIKGKGKDGSVAVRPYTPTTTND
TKGHFDLVIKVYPDGNVSSHMFGLKVGDMVEVKGPFPKFDYSTNVKKEIG
MIAGGTGITPMLQVLQELLLNPEDKTKATLLFANQTSSDIMLKAEIDKLA
AEHDNFEVVYIVDKQEEGWTGETGHVNASLIEKYLPKPSGDSMIFVCGPP
GMVNALSGPKNEDKSQGEVAGVLKGLGYTSENVYKF*
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mRNA from alignment at P-littoralis_Contig687:99406..105894-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig687.34.1 ID=mRNA_P-littoralis_Contig687.34.1|Name=mRNA_P-littoralis_Contig687.34.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6489bp|location=Sequence derived from alignment at P-littoralis_Contig687:99406..105894- (Pylaiella littoralis U1_48)
GAGTTCCGCGAGTTCCCCTTGCGAGAGATTGAAGACATGACGCACAACGT
CAGGCGTTTCCGCGTCGGGCTGCCCTCCGAGGAGCACGTGATGGGCATGA
AAACGGCGTCTTGCATCGTCATCAAGGGCAAGGGGAAGGATGGGAGCGTG
GCGGTGCGGCCGTACACCCCGACCACCACCAACGACACCAAGGTGCGCGT
GCTGCATGTTATGTGTGATGTATTTTATCTGGCGCTGCGCATTGTCTTCG
GTGCATCCACGTTGTCGTGTCCTCCTGCCGTACCTCACCATCTAGCTGTA
TGTGTGAGCCAACAGTTCCGTGTTAAATACTCCCGTGTGATCGGCGAACG
TGGCCGTGGGGCCGCAGCAGAGCGGCGCAACAGGTGGAAACTGGAAGGCA
ATACAACAGCATTAGCTGTCTACATTCGGTCGAAAATGAAATTTTACAGA
GCCACCAAACCAGTTGGTTGGCGTGTTGATTCGTCCCCCGCATCTCCTCA
GTTTTGGACACCACCAGGCACGTCTTGTAGCTCCACCATCAAGGTTCATC
CGAAATGCGTCAGTTTGACATTTTACGTGAGCCCTTTTTCACAGCCATCG
GTTCTCTCTGCGTTTCGATACGATGGTAGCGTTTCGGCAACCCCCACACC
CACAGGGCGTTGCCCGCCCCTCCCCCCTCCCTCCCCCCCAACGGTACTCT
CATCGTCGATCCCGGTTTCGCTACTCTTGTTCGCTACGAGCAGGGCCACT
TTGACTTGGTTATCAAGGTCTACCCCGACGGAAACGTGTCCAGTCACATG
TTCGGCCTCAAGGTTGGCGACATGGTCGAGGTGCGTGCGTAAAAGGACGG
TGTCCATGCTCGTGTGGTCATGTTGTTGTTGTTGTTGTTGTTGGCGTAAT
TTTTGTTTCGTTTTTGTCGTTTCTCACATCGGCTCGTCTCAAAACATTCA
GCCCGTGGTCACCAAACCGACGCCGTACATTGCGAGTCGTATTCAACTGC
TGTGTATGCTGCCGACAGTTTGGGGTATTGTTATTTGTGTACAGCGCCCC
GTGGAGTGATCCCCCCACGGTCTTCTCCCTCGGGGAAGACTCACGGCTTT
TCACGGGTCGAGGCTTAGATTTGGTCGCGCTGGTAGGTGATGCTCCCCTC
TCTCCACTCGCCGGAGAGATGTCTAAAATCACCCAAACTGCGGATTCACT
CAAACTGCGAGCGGCAGACCCGTGTTTGCGGAGGATCATTGTCCGCGGTT
TTCGTTTGCCCATGTTGAATGACCGTGGGTGCACACAATGTCATGTGTCG
TCTCTATGAAGGCTCTGCTGTGCACGATTGCAGTATCATATTTTATTATC
GTCATAATGGCGACCGGCCCGTCCGTGCAACGGTAGTGCGGAGCTGTTCG
CGCGTCCTGGCTTCCTTCGTCCTCACATGTGTCTCAATCCGTATCGGACA
TTGTGCCGTGCAATTTTTTCCGGTCCTTTTGTTATATCCCACCCACCCAC
CCCCCCCCCTGTGATCGTTGTGCTCCAATGGCTCGGCGGACGGGATTCTG
GGTGGTGCTGGGCTCGGCTGGGCTGTTCAGGTGAAGGGACCGTTCCCCAA
GTTCGACTACTCGACGAACGTGAAGAAGGAGATCGGAATGATCGCTGGCG
GAACCGGTGCGTTTGCTCGTGTGTTGCGTACATGAAGGGGTGTATGGTGC
TCCTGGCCCAAAAAAGCCACTCGTCCTTCTCTGGTGACGACGCCCCGAAC
TCATCCAGTCATGTATTCAACTTCTTCGTTCAAATCAACCCCGCAGTCAA
TTATGGAGACAAGTTTGGCGTTTCACTCTCCCGCTGTTTCTCCTGACCCC
CCCCCCGCTCACTCGTCGTCTCTGTCCACCCCCTGCCACAAAAAGTATGC
CGAATGTCATGGATGTGTATCAAGGTGTCGCTTAAATACGTACCTGGAAA
GCGGTTTGACGGTCTTTTGTAGATCGAGCTTGTCGATTGGCCTCGTTCCC
GTCCCATCTGTGACGTGTCAATCTCTCCCCACGCCCACGCGCCCACTGTC
CTCGACGCCAAGTGATAACATTGTGTTTTTGTTTGTTTTTTTGTCACGCG
GACAGGCATCACGCCGATGCTGCAGGTGCTGCAGGAGCTCCTCCTCAATC
CGGAAGACAAGACGAAGGCGACCCTCCTCTTCGCCAACCAGACCTCGTCG
GACATCATGCTCAAGGCGGAGATCGACAAGCTCGCCGCCGAGCACGACAA
CTTTGAGGTCGTCTACATCGTGAGTACCGGCGACGGCGGAAATAGGAATG
CTGTCACACATTGAGGGAGGGTTTGCCGGCCGGAAGCACTGTTGTTTTTT
CCTTTTGGTCCGAAAAGTCACGTGTCCTTCTCTTGTGACGAGGACCTGAA
CGCCTCCGCGTCTACTAATATTTTCCAACGTGTTTTCAACATCCTCGTTC
AATACAACTCCTCTCAAGAATCGGCAAGTTTTTCACACGTGAAGGCTGTT
GAAATCGACATTTGAATTAATGTCATTCTCGTCTTTTTCGTTTCCATCTC
GCCTCTTTTTTTCTGCGTGGGGGGGGGTCAGAGCCGCGTGAACTTACCCT
CCCCCCCTCGTATTTGTTTTTCCCTTATGATCAGGGACCCCAAGTAGTTT
CTCAAGTGTACACCGCAGTGAGAAACGTGTACTTGTCTTGGGTTTCGAAG
TCTCAACAGATTGTGTGGAAGACGGGAAAAGTTTCTTTTTTAACAGGAAT
ATATTAGAGCAGACGCCAGAAAGCGGTATACCGCCACGGTTCCGCGCCAC
CAAGCGGTACACCAAAATACACCACGGCGTTTGACCAGCATCCGCGTCGC
TGATTGGCCGACTAAGCCCTGTACCGTCTGCTGGATCAGAACGTGGCGGT
ATACCGTTCCTCTTCTCAGGTCGAATTGTACCGTTTTCTGGCATAGGGTG
TACCGACTTCTGGCGCCGGTCACCCGGGGCCACAGCACCCCCAGCGGAAT
ATTTCGCAGACCGTTCGTGCCAAAAAGAGTTTGGGAGAAATTTCTAGAAG
GAAGGAGCGAGAAATTTCATTTCACAACCAACATATAGCCACGTCACGCA
CGTCTCCGTCGTGTCACGTATGCACGTTGCACGCATTGCACGGCTATTAT
CGTGCACGGATGGCACGGCTCTCGCGATCTCTCCATGCTGCTTCGAAAGA
CAGCCGACAGTCCTGCCGGCATCAAAGCTGCGACGCTGTGACCGCACACC
TCCAACACTGGCGGGGTGACTGCACGCACCACAATCGCCATCGCGACCCC
TCAACTAGTACGAGCTTTATACCCGCCCCGCTGTCACGCCCTCGTGTCCC
ACATATCCCTACATACTTCCCCCAACAAACTTTCAAAGGGCCAACTTCAA
ATACCCGAATGACCAACACGCGAGAGCCGCAGCATGGAGAGATCGAGAGA
GCCGTGCCATCCGTGCACGATAATAGCCGTGCAATGCGTGCAACGTGCAT
ACGTCCGTGACACGACGGAGACGTGACGTGGCTATCTATGTTGGTTGTGA
AATGAAATTTCTCGTCCCTTCTTGAAATCTCTCCCAAACTCTTTTCGGCA
CGAACGGTCTGCGAAATATTCCGCTGGGTGGGGGTGCTGTGGCCCCGGGT
GACCGGCGCCAGAAGTCGGTACACCCCATGCCAGAAAACGGTACAATTCG
ACCTGAGAAGTAACGGTATACCGCCACGTTCTGATGCCAGCAGATGGTAC
AGGGCTTAGTCGGCCAATCAGCGACGCGGATGCTGGTCAAACGCCGTGGT
GTATTTTGGTGTACCGCTTAGTGGCGCGGAACCATGGCGGTATACCGCTT
TCTGGCGTCTGCCCAATTTATTATTGTATTGTCGAATACTCTTTCTGAGA
CACGTGATTAATGCATGAATGCGGCGTTTTTGTCGACGCAGGTGGACAAG
CAGGAAGAGGGGTGGACGGGAGAAACGGGACACGTGAACGCCTCATTGAT
CGAGAAGTACCTCCCGAAGCCCTCCGGAGACTCGATGATCTTTGTGTGCG
GACCGCCGGGTATGGTGAACGTGAGTGGCTGAATCCGGAACGGCACCGCT
TCAAGAAATATACATGTGTGTTGTCATCCCATATTCTCTGGCACACTAGT
CTGCAAACTACAGGCTAGGCCCATCGACGGGGTCACACAGGAGGAAGGTC
AACACAGGAGGAGTTACCCCCACCTTCCTTCTGCGGTACATGCGTGAGAT
TTTTTCTCGCGAGCAGGGGTCCGCGGTCCCTACCCTCGTCGGCGAAGCCG
AATCTGCTTTTTACTAACAGCATAGCCGCTTTCAAAGTAGCAAAGGAACA
CATTCACCGGGAATCGAACCCCCGTTCCTCTGCATCTAGTGGTTAACGAG
GGACCACTAGTCCACGTACTTCCTCTGTATCATAAGTTCGTGCCGTTATG
TTTTTACGCCCCCTCAACGGTGTCCGATGTCTTCGGCGATAATTTTTTCG
AAATCTTCGGAGTTTTTTGGGTTGAAACACATAAATTTTTTTCTTGCGCA
CTACCCTGCGCATGGGCTAGCGGGTAACAAAAAAGTAGTCAGGCCAAAAA
TGGCCGTATTTCATTCACCCGTTCCAAAGGTGGAGTGGGGGGCGGGGACA
AAAAAAAAACAATACAGTCCCCCCCAAAATTATCCCTAACCCTGAATCTA
GCCCCCCTGCCTCAAAGATTCATGTCGAGCCCCTCCTTACTAAATTCAGT
ACAAAAGTGACGCGACGCTAAAACCAAGACGCTTGGGTTTGCCACACTAA
AACGAAGATACTTGGGACTCATGCTCTAAAACCAAGACATCTGGCGGAAT
CAAAATTCTTTAAATGGGCCAAAATGGGCATATTTTGGTTTCATTTTAGT
TTAAAAACTGGCTTTTTTTTTTGCTTTTTTTTTGCATCAGCTTCTTTGAG
ACTTCATCTTTCGAACGAACCTAACTATAGGATGATCGAAACAGCATTGA
TGCGCAAACAATTACACGCCCACAACAGCCCAGACTTATGATACAGAGGA
AGTATACATTTGCCTCAAGTGCTGTGCGTGCAACGTCCGTCCGTCTGCTC
AACCTGCAAGTTTTTCTTTGTCTCAAACCAAGGCTCGAGGATGATGACTT
GATTCAAAAACACTACAGACGGTACCCTGTTGTACAGGTGTGCCTGCTGC
ACAAGTTGCGTTTTTTCGTCTCGCCACAAAACCTCGAAAGGGCCTGTAGT
TGATTTTTTTTGTTTCTGTTTTCTGGGTGCCTCAGTCATAGCCGCAGCAG
TTTGGTGTGTTTGACTTTAGCTACGTTGCGTGTGTTTAACTGCAAAATGC
CGGGCATCATTGTGCAACTTTGCCTCGAGCTTTCGAGCTGATCGACTCGG
TACGTCGGCATTGACCAGCAGCACAAAAATACCCGTCGAGGGTGAGATGA
GCCCCGCCGGTAGTCATGTGTTACCTCAGCTTTTGCTGAAGCTGTTAACG
TGTAAGGTCTTCGTGCTGTCACCTTCGCGAGAGGTATGACATCGACGGGC
GGCAGCACGGATTCCTCAACGTCGTGTAAATGAATGAATCGACAAGTCGG
AGAGGAAGGGGTCGGGACAACGGAAGCCTGGGATATTTCAGGTCGCAGTT
ATAACGAAGTATGTTAACTGACTCGATCGTTCGGTGTAATTTCAATCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCCACG
ACCCGTCGTACCTCACTGTTTTTTTCAAACGTGTGCCAAATCCGTATAGG
CTCTCTCGGGGCCCAAGAACGAGGACAAGAGCCAGGGAGAGGTGGCTGGA
GTGTTGAAGGGGCTGGGCTACACCTCAGAAAATGTCTACAAGTTTTAACT
AAAGCAGTTGCTCGGCGTAGACTTGTGAGGAAGCTGAGGCCGTCTTCTCG
AGAAGAGGGTCAGACCAGGAGAGGAGGGCGGCTCTATTTATCGCAAGTAG
CTGTCTGTGTGAATCCCGCACTTTGAATCAATTTTGAAATCTTTACACGT
AGCAAATGGCGAAACACATGCCTGGTGATTTTTCCATTTGAAGACCCGTA
CCCGCGCGAGACAGCCAGGATAGCGAACAGCCGAGCGCTGCTCGCCAAGA
TGCTGATGGGGTACAGCATGACATCCGCAGCGCGGAACGCTTGATACCGC
TTTGTTGGCAGACCGCCTGGTGCACGCTCTCGAAGCAGCAAAACTCATGT
GTAATCGTATTTGAAACCTACCGAATGGGAACGAAAAAATTTCATTACAA
GTTTTAACCTCTACGCCCCCCCCCCCCTGCTCCAACCACGCTAGTTTTCG
TGGTACGGTTCGGGGAAACTTCCGGTGCAATGACAATCTTGTACGCTCAC
GGCTCTGTATGATGTTGTTTATCACATTAGCTCACTACCGCCGCAGTCTA
GCCCGTGGTCACAAACCAGGCACATATCGTGCTAGGAGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig687:99406..105894-

>mRNA_P-littoralis_Contig687.34.1 ID=mRNA_P-littoralis_Contig687.34.1|Name=mRNA_P-littoralis_Contig687.34.1|organism=Pylaiella littoralis U1_48|type=CDS|length=711bp|location=Sequence derived from alignment at P-littoralis_Contig687:99406..105894- (Pylaiella littoralis U1_48)
ATGACGCACAACGTCAGGCGTTTCCGCGTCGGGCTGCCCTCCGAGGAGCA
CGTGATGGGCATGAAAACGGCGTCTTGCATCGTCATCAAGGGCAAGGGGA
AGGATGGGAGCGTGGCGGTGCGGCCGTACACCCCGACCACCACCAACGAC
ACCAAGGGCCACTTTGACTTGGTTATCAAGGTCTACCCCGACGGAAACGT
GTCCAGTCACATGTTCGGCCTCAAGGTTGGCGACATGGTCGAGGTGAAGG
GACCGTTCCCCAAGTTCGACTACTCGACGAACGTGAAGAAGGAGATCGGA
ATGATCGCTGGCGGAACCGGCATCACGCCGATGCTGCAGGTGCTGCAGGA
GCTCCTCCTCAATCCGGAAGACAAGACGAAGGCGACCCTCCTCTTCGCCA
ACCAGACCTCGTCGGACATCATGCTCAAGGCGGAGATCGACAAGCTCGCC
GCCGAGCACGACAACTTTGAGGTCGTCTACATCGTGGACAAGCAGGAAGA
GGGGTGGACGGGAGAAACGGGACACGTGAACGCCTCATTGATCGAGAAGT
ACCTCCCGAAGCCCTCCGGAGACTCGATGATCTTTGTGTGCGGACCGCCG
GGTATGGTGAACGCTCTCTCGGGGCCCAAGAACGAGGACAAGAGCCAGGG
AGAGGTGGCTGGAGTGTTGAAGGGGCTGGGCTACACCTCAGAAAATGTCT
ACAAGTTTTAA
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