mRNA_P-littoralis_Contig687.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig687.4.1
Unique NamemRNA_P-littoralis_Contig687.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig687.4.1 vs. uniprot
Match: D7FHU0_ECTSI (Cytochrome c oxidase subunit VIa n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHU0_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 5.370e-51
Identity = 88/104 (84.62%), Postives = 97/104 (93.27%), Query Frame = 1 
Query:    1 VASLLRTAVRRPAAAAVASARRSMSGDAAHAAEEMAKWKKMTAGMAVLSVAVTALVLATEEHHHADEDAPVPSYMKIRNKPYPWTCADCSLLDSACFEKCKADR 312
            V++L+R AVRRPAAAA +SARRSMSGDAAHAAEEMAKWKKMTAGM VLS+AVT LVLATEEHHH DEDAP+PSYMKIRNKP+PW CADC+LLDSACF KCKA+R
Sbjct:    2 VSALVRAAVRRPAAAAASSARRSMSGDAAHAAEEMAKWKKMTAGMGVLSLAVTTLVLATEEHHHRDEDAPIPSYMKIRNKPHPWNCADCTLLDSACFAKCKAER 105
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BLAST of mRNA_P-littoralis_Contig687.4.1 vs. uniprot
Match: A0A4D9D930_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D930_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 7.110e-14
Identity = 40/87 (45.98%), Postives = 58/87 (66.67%), Query Frame = 1 
Query:   67 SMSGDAAHAAEEMAKWKKMT---AGMAVLSVAVTALVLATEEH-HHADEDAPVPSYMKIRNKPYPWTCADCSLLDSACFEKCKADRA 315
            S  GD  H A+E+ KW+K++    G+ +L      L L++  H  H+D+  P+P YM IR+KP+PW C+DCSL D+ CF+KCKA+RA
Sbjct:   24 SQGGD--HGADEVDKWRKISIVATGVVILMSGRELLSLSSHGHGEHSDK--PLPDYMHIRSKPFPWECSDCSLFDTDCFKKCKAERA 106
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BLAST of mRNA_P-littoralis_Contig687.4.1 vs. uniprot
Match: A0A7S3ZZW1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZZW1_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.080e-12
Identity = 43/86 (50.00%), Postives = 50/86 (58.14%), Query Frame = 1 
Query:   61 RRSMSGDAAHAAEEMAKWKKMTAGM----AVLSVAVTALVLATEEHHHADEDAPVPSYMKIRNKPYPWTCADCSLLDSACFEKCKA 306
            RR MSGDAA AA EMAKW K + G      VLS  +  +      H H  ED    S+MKIR KPYPW C DC+L ++ CF  CKA
Sbjct:   21 RRMMSGDAAEAAIEMAKWTKYSYGAIAFCGVLSTYIGIVEYRHMMHPHEHEDIAY-SHMKIRAKPYPWDCPDCNLFEAQCFRDCKA 105
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BLAST of mRNA_P-littoralis_Contig687.4.1 vs. uniprot
Match: A0A7S4EH99_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EH99_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 2.500e-9
Identity = 32/74 (43.24%), Postives = 46/74 (62.16%), Query Frame = 1 
Query:  100 EMAKWKKMTAGMAVLS-VAVTALVLATEEHHHADEDAPVPSYMKIRNKPYPWTCADCSLLDSACFEKCKADRAA 318
            E+  W K++  + V   VA+ A  LA EEHHH   D P+P YM IR+K +PW C  C L D  C++KC+ +++A
Sbjct:   34 ELWTWIKISIFVCVPGCVAMVAKDLAIEEHHHRP-DGPLPEYMSIRSKEFPWECDQCPLFDLNCWKKCREEQSA 106
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BLAST of mRNA_P-littoralis_Contig687.4.1 vs. uniprot
Match: A0A7S2G097_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G097_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 3.420e-9
Identity = 34/88 (38.64%), Postives = 54/88 (61.36%), Query Frame = 1 
Query:   55 SARRSMSGD--AAHAAEEMAKWKKMTAGMAVLSVAVTALVLATEEHHHADEDAPVPSYMKIRNKPYPWTCADCSLLDSACFEKCKADR 312
            S+ R+MSG      A  +M  W K++  +A+  V+V  +V+   E  H   +AP  S+ KIR KPYPW C+DC+L D  C+++C+A++
Sbjct:   19 SSTRAMSGGHCPVQAEADMNNWIKISV-VAIGGVSVAGVVIGYLESQHHHHEAPPRSFKKIRAKPYPWECSDCTLFDLECWKECRANK 105
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BLAST of mRNA_P-littoralis_Contig687.4.1 vs. uniprot
Match: A0A7S3Y541_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y541_HETAK)

HSP 1 Score: 68.2 bits (165), Expect = 1.190e-8
Identity = 35/75 (46.67%), Postives = 42/75 (56.00%), Query Frame = 1 
Query:  103 MAKWKKMTAGMAVLSVAVTALVLATEEHHHADEDAPVPS----YMKIRNKPYPWTCADCSLLDSACFEKCKADRA 315
            M KWKKM+ GM V  + V  ++ A +   H             YMKIRNKPYPWTC DC   DSAC ++CKA  A
Sbjct:    1 MVKWKKMSQGM-VAFMGVVGVLTAIQHSMHXXXXXXXXXXXXXYMKIRNKPYPWTCTDCDFFDSACHKECKAKLA 74
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BLAST of mRNA_P-littoralis_Contig687.4.1 vs. uniprot
Match: A0A7S4DCJ6_HETAK (Hypothetical protein (Fragment) n=5 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DCJ6_HETAK)

HSP 1 Score: 68.2 bits (165), Expect = 1.220e-8
Identity = 35/75 (46.67%), Postives = 42/75 (56.00%), Query Frame = 1 
Query:  103 MAKWKKMTAGMAVLSVAVTALVLATEEHHHADEDAPVPS----YMKIRNKPYPWTCADCSLLDSACFEKCKADRA 315
            M KWKKM+ GM V  + V  ++ A +   H             YMKIRNKPYPWTC DC   DSAC ++CKA  A
Sbjct:    1 MVKWKKMSQGM-VAFMGVVGVLTAIQHSMHXXXXXXXXXXXXXYMKIRNKPYPWTCTDCDFFDSACHKECKAKLA 74
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BLAST of mRNA_P-littoralis_Contig687.4.1 vs. uniprot
Match: F0Y9U8_AURAN (Trifunctional purine biosynthetic protein adenosine-3 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y9U8_AURAN)

HSP 1 Score: 65.1 bits (157), Expect = 1.640e-7
Identity = 31/70 (44.29%), Postives = 43/70 (61.43%), Query Frame = 1 
Query:  103 MAKWKKMTAGMAVLSVAVTALVLATEEHHHA---DEDAPVPSYMKIRNKPYPWTCADCSLLDSACFEKCK 303
            M+KW K + G    S  +   V+ TE +H A   +   P  S++KIR KPYPW+C DC+L DSAC++ CK
Sbjct: 1024 MSKWVKYSYGALAFSGTLGTYVVITELNHLAHPHESHTPAMSHLKIRAKPYPWSCPDCNLFDSACWKACK 1093
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BLAST of mRNA_P-littoralis_Contig687.4.1 vs. uniprot
Match: B8BXS5_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BXS5_THAPS)

HSP 1 Score: 53.5 bits (127), Expect = 4.460e-5
Identity = 29/76 (38.16%), Postives = 45/76 (59.21%), Query Frame = 1 
Query:   97 EEMAKWKKMTAGMA----VLSVAVTALVLATEEHHHADEDAPVPSYMKIRNKPYPWTCADCSLLDSACFEKCKADR 312
            +EM KW K++A +A    VLSV     ++   +H H     P+P YM I+ K +PW C  C+L D  C++KC+A++
Sbjct:   67 QEMWKWVKISAVVATPVCVLSVLKDIFLV---DHVHRPH-GPLPDYMNIQVKEFPWECETCALFDLECWKKCRAEQ 138
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig687.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7FHU0_ECTSI5.370e-5184.62Cytochrome c oxidase subunit VIa n=2 Tax=Ectocarpu... [more]
A0A4D9D930_9STRA7.110e-1445.98Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S3ZZW1_9STRA1.080e-1250.00Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S4EH99_9STRA2.500e-943.24Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7S2G097_9STRA3.420e-938.64Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3Y541_HETAK1.190e-846.67Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4DCJ6_HETAK1.220e-846.67Hypothetical protein (Fragment) n=5 Tax=Heterosigm... [more]
F0Y9U8_AURAN1.640e-744.29Trifunctional purine biosynthetic protein adenosin... [more]
B8BXS5_THAPS4.460e-538.16Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig687contigP-littoralis_Contig687:16768..19522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FHU0
PFAMsCOX6A
Model size1290
Max annot lvl2759|Eukaryota
KEGG koko:K02266
KEGG TC3.D.4.11,3.D.4.8
KEGG Pathwayko00190,ko01100,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04260,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00154
Hectar predicted targeting categorysignal peptide
Exons3
Evalue2.03e-47
EggNOG OGs2BY4U@1|root,2SBT1@2759|Eukaryota
Ec32 ortholog descriptioncytochrome c oxidase subunit VIa
Ec32 orthologEc-07_006760.1
Cds size252
BRITEko00000,ko00001,ko00002
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791424.1793544-UTR-P-littoralis_Contig687:16767..168361680791424.1793544-UTR-P-littoralis_Contig687:16767..16836Pylaiella littoralis U1_48UTRP-littoralis_Contig687 16768..16836 +
1680791424.235554-UTR-P-littoralis_Contig687:18553..195221680791424.235554-UTR-P-littoralis_Contig687:18553..19522Pylaiella littoralis U1_48UTRP-littoralis_Contig687 18554..19522 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791424.196416-CDS-P-littoralis_Contig687:16836..168641680791424.196416-CDS-P-littoralis_Contig687:16836..16864Pylaiella littoralis U1_48CDSP-littoralis_Contig687 16837..16864 +
1680791424.2085617-CDS-P-littoralis_Contig687:17323..174391680791424.2085617-CDS-P-littoralis_Contig687:17323..17439Pylaiella littoralis U1_48CDSP-littoralis_Contig687 17324..17439 +
1680791424.2192671-CDS-P-littoralis_Contig687:18445..185531680791424.2192671-CDS-P-littoralis_Contig687:18445..18553Pylaiella littoralis U1_48CDSP-littoralis_Contig687 18446..18553 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig687.4.1prot_P-littoralis_Contig687.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig687 16837..18553 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig687.4.1

>prot_P-littoralis_Contig687.4.1 ID=prot_P-littoralis_Contig687.4.1|Name=mRNA_P-littoralis_Contig687.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=84bp
MSGDAAHAAEEMAKWKKMTAGMAVLSVAVTALVLATEEHHHADEDAPVPS
YMKIRNKPYPWTCADCSLLDSACFEKCKADRAA*
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mRNA from alignment at P-littoralis_Contig687:16768..19522+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig687.4.1 ID=mRNA_P-littoralis_Contig687.4.1|Name=mRNA_P-littoralis_Contig687.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2755bp|location=Sequence derived from alignment at P-littoralis_Contig687:16768..19522+ (Pylaiella littoralis U1_48)
GTTGCTTCGCTTCTTAGGACGGCGGTACGGAGGCCGGCGGCCGCGGCTGT
GGCTTCCGCCCGCCGCAGCATGTCGGGTGATGCAGCCCACGCAGCGGGTG
AGTGAGAGATGTGTTGGTCAAGAATGGACACGAGAGGCTTGGCGCTGGTT
TTGTCTTTTTCCTTTCAGAGCACTGCTGTATGACATGAAGATCAAATATC
GTACAGCAGCAACATACGCCTGTATTCCGAAGGGTGCACTGCTCTGCCGG
TAGACTCCAGAATTCTTCACAGTCGAGGAGGGGCATTGAACTCACGCAGC
AGAAAATGCATTAGTCGACGCTGTTCTCGTTGGTGGCGGCGGCAAGCAAG
TGGGAGGTAGCTGTGGCGGTGAAACTGCACAGCAGTGGTAGTGTACCGTC
GATAGTCGTCGACATTTTCTTTTTCTCGCGTAAAATCATCGACCCGACCC
CTTTGCGAACCACCCCGCTGCCCACGCGCCGCTCCCCCCGCCTGCCCGCC
CCTGATCTGTTTTCAAACCGCGCATTATTGTCACATAACGAAACCGAAAC
ATACAGAGGAGATGGCCAAGTGGAAGAAGATGACGGCTGGCATGGCGGTG
TTGAGCGTGGCCGTTACCGCACTCGTGCTCGCAACCGAGGAGCACCACCA
CGCTGACGAGGACGCACCCGTGGTGAGTCAGGAGGCGGGTGTAGCGTTTG
TCGGTGTAACGAGGAGCAGCGCGCTGATTAATTTGCCTTTAGTGTACCAG
GTACATCAGAGGCATGGTTGCGGTGTGTAAGTGAGCTCTGCGTCACGAGA
AATAAGGGAGGTCAAAAAATCTTAAAATACATGTCAAGGAGGGACTTCAC
TTCTTGAAAAGCTAGGTGTTCGTGGCCCTGGCCACCCCCTCTATTATTTT
ACGGTAACCATGATTGTACCACATGCACGAAGGAGGGTCGTTCGTAGACA
TACAGATAAAAAGGTTGGCGGTATCTCTTGATGTTACCCATGTGGGTTTG
AGGATGTCTCCGTTGGTTTTGGCAACCCCTCGCTCCTTCATACTCGCGGG
ACCTCTTGAGTTGTGAGAGACAGCTGGGGCAAGTTTCAAAATCTTAAATC
AAACTTTGGGGTGGGCTGTTGGTGAGGGGGACGTGACCGAGGATGGTGTT
GGATATTGTGGTGTCATGATGTTGGGGTCGGGAGACTGAAGGGTTTCCTT
CGGAAAAATTGCGTCGGGACTTGAAGTTTTTCCCTGTGTCAACAGGCTGT
CTCAACAGGACAAATGCCGCTGCTCCTCGGTGATTTGTGTAGACAAGTGC
GTTTTCTACTGCTACCGGTACCGTTTTGCGTTGTCGTTTTTCGTGTTCGG
TTTCTGCTTGTTGTATCAACCAATCCCATCCAAATCCCGCAGGAATAGTG
ACAGCCTTTACAGCAGTACCTGGTGTTTAGCAACGCACGTTGAATACGAG
TATACAGGAGTACTCCGACGGAGGAATCGTCTCAGATGTCGCCCGTCCTT
CGTGTTACACGCGGTTTTGGCTTGTGCAGCTGTCACAGGATACGTAAATT
TAGTCTATTTCCTTCTGGCCATTGTTTCGTCATCTATCTCGACTCTGTTC
CTTTCGTTTTCTCAGTTCTTCTCCCTCATCGGTGCAAACGCCCCCGTTCA
TGTTTCGTGCCCCCCCCCCTCCCCGCAGCCGTCCTACATGAAGATCCGCA
ACAAGCCGTACCCGTGGACCTGCGCGGACTGCTCGCTGCTGGACTCGGCG
TGCTTCGAAAAGTGCAAGGCGGACCGGGCCGCGTAAATATTTTAGACCCA
TTCCGCCTTCGTCGGTGTATGTAGCAGTAGCTGCAGCAGCAGCAGCAGCC
GAAGAAGCACCAGCTTAAGCGTCACCACCATCGCATTTTGGGGGGGGGGG
AACTGCTGTTCTGTGTGCATGTCAGAGAGGGCGATGACTTTTGTTTTCTG
TGCTGATTGAGGGGCCGGTCAGTAGGTTGCCCGTGTTCGGTTTCAGTCGT
ATCGCATCAACTACTCTGAAGGTCGTGAGTGGTTAGTAGTCATACCCCGG
GTGAACAGTACTTTTTTGGTCACACTCGGCATCGCCAGAATGTTGCATGA
TGTAACCGCTGCCGCTGCTGCTGCTGCTGCATCAAAAGGCAGTGCCCAAT
ACATTGTAAAGAGCGGACCCTGTTACGGTTGCCAGCAGAGGGCGGGGGGC
GGCAGGAGAAGGGGGGGGCTGAAAGAGGCTGTCTGTTCTGCCTCCGCCTT
TTGGCCTTGGTAGCGTGGAGATGTTTCTGTTGCGCGGCTAGTCCCACGTT
CCACCTTCTGAGGCATAGCCTTTATATGCACCGGCACGGAGCGAGGGCAA
GCGATTTTTATTTTGATGGTGACGTGTGCTTTGATGAAAGAACGCAAAAA
AAAATGAAAAGTTTTCGAATGTCTCCCGACACGCCCACAGCAAGGAGCGC
GCACTCTTGCGTACACGATCGAGTCAAACATACGATCGAGTCAAACATAC
GATATGATATCATACAGTATGCATGTAAATTTTTTTCGGAGCAGCTGCTC
AAAAAACAAAAAATGTATCGACCTTCTTCCTGCGTGACCCCGGCGGATGA
TGCGCACCCAAAAATACCGACAGGTGAACTGCTGTCTGTTTATCTGTTTT
TCTTTATTCTTGTACTTCGGCCAACCACCGAAGACACCTTATTGGGGGGT
ATTGTGATCCCCCCCCCTTTTATGTTCTTGTTTCAGCTTTCATTTTCGTG
TTCTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig687:16768..19522+

>mRNA_P-littoralis_Contig687.4.1 ID=mRNA_P-littoralis_Contig687.4.1|Name=mRNA_P-littoralis_Contig687.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=252bp|location=Sequence derived from alignment at P-littoralis_Contig687:16768..19522+ (Pylaiella littoralis U1_48)
ATGTCGGGTGATGCAGCCCACGCAGCGGAGGAGATGGCCAAGTGGAAGAA
GATGACGGCTGGCATGGCGGTGTTGAGCGTGGCCGTTACCGCACTCGTGC
TCGCAACCGAGGAGCACCACCACGCTGACGAGGACGCACCCGTGCCGTCC
TACATGAAGATCCGCAACAAGCCGTACCCGTGGACCTGCGCGGACTGCTC
GCTGCTGGACTCGGCGTGCTTCGAAAAGTGCAAGGCGGACCGGGCCGCGT
AA
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