mRNA_P-littoralis_Contig1170.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1170.2.1
Unique NamemRNA_P-littoralis_Contig1170.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1170.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1170contigP-littoralis_Contig1170:19540..21375 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1484
Hectar predicted targeting categoryother localisation
Exons2
Cds size795
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789490.422447-UTR-P-littoralis_Contig1170:19539..199221680789490.422447-UTR-P-littoralis_Contig1170:19539..19922Pylaiella littoralis U1_48UTRP-littoralis_Contig1170 19540..19922 -
1680789490.4368646-UTR-P-littoralis_Contig1170:20274..203491680789490.4368646-UTR-P-littoralis_Contig1170:20274..20349Pylaiella littoralis U1_48UTRP-littoralis_Contig1170 20275..20349 -
1680789490.457531-UTR-P-littoralis_Contig1170:21144..213751680789490.457531-UTR-P-littoralis_Contig1170:21144..21375Pylaiella littoralis U1_48UTRP-littoralis_Contig1170 21145..21375 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789490.4475348-CDS-P-littoralis_Contig1170:20349..211441680789490.4475348-CDS-P-littoralis_Contig1170:20349..21144Pylaiella littoralis U1_48CDSP-littoralis_Contig1170 20350..21144 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1170.2.1prot_P-littoralis_Contig1170.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1170 20350..21144 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1170.2.1

>prot_P-littoralis_Contig1170.2.1 ID=prot_P-littoralis_Contig1170.2.1|Name=mRNA_P-littoralis_Contig1170.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=265bp
MIWPPCLQTIAFGRDFDSSLDGVRWPPCVRNIVFGTNFNQTLIGIDWPRG
LTRLHMGWAFNKPVEGVVWPEGLQHITFSHMFDQPIDAALFPSTLQALEL
GVMFDQDVSGVTWPASLKWLSFGCQFNHTLEHTRFPQGLEGLELGCSWNH
PIAPVELPDNLTSLRLGYDFDQPLDDVSWPRRLSQLSIDDSFNQPLAGVK
WSPSLTSIEIGDAFDQSLRGVQWPIGLKKAVFGTRMDIDRERSATWPPSL
VELKFGATALKGTL*
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mRNA from alignment at P-littoralis_Contig1170:19540..21375-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1170.2.1 ID=mRNA_P-littoralis_Contig1170.2.1|Name=mRNA_P-littoralis_Contig1170.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1836bp|location=Sequence derived from alignment at P-littoralis_Contig1170:19540..21375- (Pylaiella littoralis U1_48)
AGGCGTCGCGAGAGAGCGGCAGCGGGCATCCCAGGGTTGCCGCCCGTACG
AACCGAACGGCTGACGTTCGGTGATCACTTTGACCGCGCATTGAACAACG
TCGTGTGGCCTACCACACTCAGCCATATCACGTTCGGAAAGAGTTTCAAC
AAGAGTCTGAACGGTGTGCGGTGGCCGGCAACTCTAGCGCACGTGCGGTT
TGGGTCCCGTTTTAACCAGCCCTTGGTTGAGATGATCTGGCCACCATGCC
TGCAAACAATTGCCTTTGGGCGTGACTTTGACAGCAGCCTAGACGGCGTG
CGTTGGCCACCATGTGTGCGGAATATTGTTTTTGGAACCAACTTCAACCA
AACTCTCATCGGCATTGACTGGCCTAGAGGGCTGACGAGGTTGCACATGG
GCTGGGCGTTCAACAAACCTGTGGAAGGCGTGGTGTGGCCAGAAGGGCTT
CAACACATTACATTCAGCCACATGTTTGATCAGCCGATCGATGCAGCGTT
GTTCCCATCTACCCTCCAAGCTCTTGAGCTTGGCGTGATGTTTGACCAAG
ACGTGAGCGGTGTCACGTGGCCGGCCAGCCTGAAGTGGCTGTCGTTCGGC
TGCCAGTTCAACCACACCTTGGAGCACACCCGGTTTCCCCAAGGACTTGA
AGGGCTGGAGCTTGGCTGTAGCTGGAACCATCCCATCGCACCGGTTGAGC
TTCCCGATAATTTGACTTCCCTTCGCCTTGGGTACGACTTCGATCAACCA
CTCGACGATGTCAGCTGGCCGCGTCGACTTTCCCAACTCTCAATCGACGA
TTCCTTCAACCAGCCTTTGGCCGGAGTGAAGTGGTCACCGAGCTTGACAA
GCATTGAGATCGGGGACGCGTTTGACCAATCTTTGAGAGGGGTACAGTGG
CCGATAGGCCTCAAGAAGGCAGTTTTTGGGACGAGGATGGACATCGACCG
CGAACGTTCAGCAACTTGGCCACCAAGCTTGGTCGAGTTGAAGTTTGGTG
CGACAGCTCTGAAGGGTACATTGTGAACTGTCGGCAGTTCGATCGTTGAC
CATCTCACCAAGTTGGTGGTTTCTACGATGGAATGGCCCGCAATCGATGG
GGTGCCGGCATTATTCCCAATGGAGACTATGACGCCCCTGTCCGTGAAAG
TTCACGTACTCATCTCCATGCCCACGAGCTTCAGCGATGGAGGAGAAAGG
CACTGTCCACACTTGGGCATGCGGTTTTCCCCCTGGGGAAGTTATTTCCT
CAAAGTATTTCGACGTCATGATCTCGTCTGACTTATGATATCGCCAGCTT
AGGGGTTGTTAGACGGACGCCAGAAACTACTGGAAGTGAAGGCCGGAACA
TTATTATGCCTTTGACGAGGTAAGTGGCAGCGAAGTGTTGTACATTTGCT
TGAGGAAAGACTCGAGAGGGCAATGGGGGAGGCCACGGATGACATATTTC
CAGGCCGTAGCGTCTTCATTTGGCAAAGAGGACACCATTAGTGACAACAC
GGATTCGAGTCCACGGTAGGATGCCGAGGGGGACGCTCCGTTCTCAAACG
ATTGCCATTTCTAGATGGCACAAGCGGGTAGACTTTAGCCTACGCCAACA
CTTTGTGGGGTGCTCGTATCGGTGGCAAGCGGATAGAGGTTTGGCATTTT
TTATTGGTGACGATACGAGTTTCTCGGACTTATATCTCGTAGATGTTTCG
TCAAGTGTTGTCGTACTCTACCTACTCAGTCCACAATTCGAACTGCTGCG
CTCTGGAGGCAGGTCTTCCGTTTTTGAAGAGTTTTCAGGGTAGCTAATAG
TTCGAAATTGCCGCGGTACATATTCTAGTTCTTTGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1170:19540..21375-

>mRNA_P-littoralis_Contig1170.2.1 ID=mRNA_P-littoralis_Contig1170.2.1|Name=mRNA_P-littoralis_Contig1170.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=795bp|location=Sequence derived from alignment at P-littoralis_Contig1170:19540..21375- (Pylaiella littoralis U1_48)
ATGATCTGGCCACCATGCCTGCAAACAATTGCCTTTGGGCGTGACTTTGA
CAGCAGCCTAGACGGCGTGCGTTGGCCACCATGTGTGCGGAATATTGTTT
TTGGAACCAACTTCAACCAAACTCTCATCGGCATTGACTGGCCTAGAGGG
CTGACGAGGTTGCACATGGGCTGGGCGTTCAACAAACCTGTGGAAGGCGT
GGTGTGGCCAGAAGGGCTTCAACACATTACATTCAGCCACATGTTTGATC
AGCCGATCGATGCAGCGTTGTTCCCATCTACCCTCCAAGCTCTTGAGCTT
GGCGTGATGTTTGACCAAGACGTGAGCGGTGTCACGTGGCCGGCCAGCCT
GAAGTGGCTGTCGTTCGGCTGCCAGTTCAACCACACCTTGGAGCACACCC
GGTTTCCCCAAGGACTTGAAGGGCTGGAGCTTGGCTGTAGCTGGAACCAT
CCCATCGCACCGGTTGAGCTTCCCGATAATTTGACTTCCCTTCGCCTTGG
GTACGACTTCGATCAACCACTCGACGATGTCAGCTGGCCGCGTCGACTTT
CCCAACTCTCAATCGACGATTCCTTCAACCAGCCTTTGGCCGGAGTGAAG
TGGTCACCGAGCTTGACAAGCATTGAGATCGGGGACGCGTTTGACCAATC
TTTGAGAGGGGTACAGTGGCCGATAGGCCTCAAGAAGGCAGTTTTTGGGA
CGAGGATGGACATCGACCGCGAACGTTCAGCAACTTGGCCACCAAGCTTG
GTCGAGTTGAAGTTTGGTGCGACAGCTCTGAAGGGTACATTGTGA
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