mRNA_P-littoralis_Contig685.26.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig685.26.1
Unique NamemRNA_P-littoralis_Contig685.26.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig685.26.1 vs. uniprot
Match: A0A6H5K9K2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9K2_9PHAE)

HSP 1 Score: 199 bits (505), Expect = 3.730e-56
Identity = 108/152 (71.05%), Postives = 124/152 (81.58%), Query Frame = 2 
Query:  341 WREKDFLVDALLSIVGGSSEDGEGGRVDSGSGNGRVDVVGSGSIGEISNVRVSQDSSAGGESLEWTDALPLEDAEVSKLLQELALGGGEDDASLGDFDEDFLGRPIDLEEVFSSSPKSNLAGAHGSTRKELSFGHSDVAGETADSAVGETKG 796
            WR+K+FLV+ALLS+ GGSSEDGEGG VD GSGNG V+V G G  G+ISNV V++ S+ GGE LEW DA+PLE+A +SKLLQELA+  GEDDASLGDFDE+FL R ID +EVF SSPKSNLA A G TR ELSF  SDVAGETA S +GETKG
Sbjct:  339 WRKKEFLVNALLSVAGGSSEDGEGGLVDHGSGNGPVNVAGDGGDGKISNVWVNRVSATGGEGLEWIDAVPLEEAVMSKLLQELAVEDGEDDASLGDFDEEFLARSIDFDEVFPSSPKSNLADAQGPTRVELSFDQSDVAGETAASGMGETKG 490
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BLAST of mRNA_P-littoralis_Contig685.26.1 vs. uniprot
Match: A0A6H5JU85_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU85_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 1.040e-11
Identity = 36/48 (75.00%), Postives = 38/48 (79.17%), Query Frame = 3 
Query:    3 GPSPPALHRTPIR*LEHLLVSHSVCALAPSQARLAAKEGGPIVNGLNR 146
            GPSP ALHRTPIR LE LL SHS CALA SQA L AKEGG I+NG +R
Sbjct:    8 GPSPQALHRTPIRLLERLLDSHSACALAASQAGLVAKEGGLIINGESR 55
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BLAST of mRNA_P-littoralis_Contig685.26.1 vs. uniprot
Match: A0A6H5K8U0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8U0_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 2.490e-11
Identity = 36/48 (75.00%), Postives = 37/48 (77.08%), Query Frame = 3 
Query:    3 GPSPPALHRTPIR*LEHLLVSHSVCALAPSQARLAAKEGGPIVNGLNR 146
            GPSP ALHRTPIR LE LL SHS CALA SQA L AKEGG I+NG  R
Sbjct:    8 GPSPQALHRTPIRLLERLLDSHSACALAASQAGLVAKEGGLIINGRPR 55
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BLAST of mRNA_P-littoralis_Contig685.26.1 vs. uniprot
Match: A0A6H5KVF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF4_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.200e-10
Identity = 42/78 (53.85%), Postives = 50/78 (64.10%), Query Frame = 3 
Query:    3 GPSPPALHRTPIR*LEHLLVSHSVCALAPSQARLAAKEGGPIVNG----LNRVWHGPEYSARCGLRIEGGVRTIASQA 224
            GPSP ALHRTPIR LE LL SHS CALA SQA L AKEGG I+NG    +    H P+  AR G +      ++++QA
Sbjct:    8 GPSPQALHRTPIRLLERLLDSHSACALAASQAGLVAKEGGLIINGSVLPMQGSTHTPDRPARAGSQRRHTTPSLSTQA 85
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BLAST of mRNA_P-littoralis_Contig685.26.1 vs. uniprot
Match: D7FZI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI2_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 5.270e-10
Identity = 41/78 (52.56%), Postives = 49/78 (62.82%), Query Frame = 3 
Query:    3 GPSPPALHRTPIR*LEHLLVSHSVCALAPSQARLAAKEGGPIVNG----LNRVWHGPEYSARCGLRIEGGVRTIASQA 224
            GPSP ALHRTPIR  E LL SHS CALA SQA L  KEGGPI+NG    +    H P+  AR G +      ++++QA
Sbjct:    8 GPSPQALHRTPIRLPERLLDSHSACALAASQAGLVVKEGGPIINGSVLPMQGSQHTPDRPAREGSQRRHTTPSLSTQA 85
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig685.26.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5K9K2_9PHAE3.730e-5671.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU85_9PHAE1.040e-1175.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8U0_9PHAE2.490e-1175.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVF4_9PHAE1.200e-1053.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZI2_ECTSI5.270e-1052.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig685contigP-littoralis_Contig685:111344..113752 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size996
Hectar predicted targeting categoryother localisation
Exons4
Cds size624
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig685.26.1prot_P-littoralis_Contig685.26.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig685 111541..112625 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791422.4811409-UTR-P-littoralis_Contig685:111343..1115401680791422.4811409-UTR-P-littoralis_Contig685:111343..111540Pylaiella littoralis U1_48UTRP-littoralis_Contig685 111344..111540 -
1680791422.5373812-UTR-P-littoralis_Contig685:112625..1126651680791422.5373812-UTR-P-littoralis_Contig685:112625..112665Pylaiella littoralis U1_48UTRP-littoralis_Contig685 112626..112665 -
1680791422.5512366-UTR-P-littoralis_Contig685:113617..1137521680791422.5512366-UTR-P-littoralis_Contig685:113617..113752Pylaiella littoralis U1_48UTRP-littoralis_Contig685 113618..113752 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791422.4921963-CDS-P-littoralis_Contig685:111540..1120291680791422.4921963-CDS-P-littoralis_Contig685:111540..112029Pylaiella littoralis U1_48CDSP-littoralis_Contig685 111541..112029 -
1680791422.5077386-CDS-P-littoralis_Contig685:112295..1123651680791422.5077386-CDS-P-littoralis_Contig685:112295..112365Pylaiella littoralis U1_48CDSP-littoralis_Contig685 112296..112365 -
1680791422.5228503-CDS-P-littoralis_Contig685:112560..1126251680791422.5228503-CDS-P-littoralis_Contig685:112560..112625Pylaiella littoralis U1_48CDSP-littoralis_Contig685 112561..112625 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig685.26.1

>prot_P-littoralis_Contig685.26.1 ID=prot_P-littoralis_Contig685.26.1|Name=mRNA_P-littoralis_Contig685.26.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=208bp
MWSPDRRRGPDHRQSSRETCSWEWIHPQRIATTARMEVILQRQSKVTRMN
WTMTTWREKDFLVDALLSIVGGSSEDGEGGRVDSGSGNGRVDVVGSGSIG
EISNVRVSQDSSAGGESLEWTDALPLEDAEVSKLLQELALGGGEDDASLG
DFDEDFLGRPIDLEEVFSSSPKSNLAGAHGSTRKELSFGHSDVAGETADS
AVGETKG*
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mRNA from alignment at P-littoralis_Contig685:111344..113752-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig685.26.1 ID=mRNA_P-littoralis_Contig685.26.1|Name=mRNA_P-littoralis_Contig685.26.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2409bp|location=Sequence derived from alignment at P-littoralis_Contig685:111344..113752- (Pylaiella littoralis U1_48)
CAGGGCCCTCTCCACCCGCCCTTCACCGTACACCCATCCGATAGCTCGAG
CATCTACTGGTCTCGCACTCGGTGTGCGCTCTAGCACCATCACAGGCCCG
GCTGGCGGCGAAGGAAGGAGGCCCAATCGTCAACGGTGAGTCGAGAAAAA
TGAAAACATGACCAAACATGACCATAGGAGATCCGGGGGGTCGGACAAAA
CTGGCGAACATGCTCGCCACGCAGCCCTCACGCTCGTCTCTGAGCGCACG
GGTTGCTGCGCAACAAGGTTAGGAGCATAGAGTGTGTAAGTCTGGCTTTC
TCGGACAGAAGTCCGATTGTCAAACGGTGTAGTGTACGCAGAGCAATGTC
CAAACTTCGGACCCATAACCGTCACAGTGCCGTATCTCTCCGCTTGGGCA
CACTAAAATGGACTGGTTTGTCAAGCAGTTTGTTTGCACAATCAGAACGC
TGTCCTCCTGCTGCAACAGCTGAACCCCGCAGCATAACCTCCCCAACATG
TTGCACAGCACCACCTCAGTAGAAGCTGAGGGAGTGCTGCACACCCTGTC
ATGTAGCATAGCCGCGTCAGACGCCTTTTTTGTCACTTGTGTCTCAATAT
TGTCACGGACCCACCGCCGTGTTCGACTCAAGATGACACACCCCCTAGAC
CGACAATCAAAGCACGATTATCGACAACGAAGCGACGAGGAAGAGGACTT
ACGTGTCGAAACGATACCCTGTGAGAGAGCTCTCAACCTGCCCGTAGCAA
CGCGGACGTTTTCCGCGCTACCACTATTTCAGCTGTTGTTGATAAGTCGA
GCTATGGAAATCGGTCCAGGTGATGTGTTGTCTTGCGTCGTACCACGGCC
GTGGTAGGTGTGTTATCCTGCGTCGTACAGCGTATGCACCCCCCGGCAGC
AGCATGTTGTTCGCATACATAGCTACGCAGCTGATGCTTCCGGCGTCCAT
CCTTGTTCTGCATTATCATGTACTAGAATTAGCCTCCATGTTGGGTGGGG
TCCTCACGAAGGGCCATCAAGCGGTCAACCAGCACTTCAGCCGCGTTCAT
GTGGTAGCTCCTTCCCCTGCCTGGTTTCAAATTTCAGGGTTGAACAGGGT
GTGGCATGGACCCGAATACTCTGCGCGATGTGGTCTCCGGATCGAAGGAG
GGGTCCGGACCATCGCCAGTCAAGCCGAGAGACGTGTTCATGGTGAGCTT
ATGTATACCCTCCTATCGCTGCCTTCCTCATCTCTGGTGTCAAGAGGTTG
ACAGGAAAAGCCAATTTTTATTTTTAATCCAAGCGCTTTCTCCTTCTGGG
TGAGAGAAAAGTACTCCTGCATTCAGACCATGTAATCTACTAACTCCCCT
TCTTTGTTGTCGTTTTCTCTCTCTATTCCTCCCGTAGGGAGTGGATTCAC
CCGCAGAGGATAGCGACGACCGCGCGCATGGAGGTGATTCTCCAACGCCA
ATCCAAGGTACCTTTGGCTATTTTGCAAAACACACTACGGGTTCTGACCC
TTGAACGTCTGCAGTGGTTGCCGTTGTTTGTCACATGCTAAAACAAAAAT
ATGACTCCCTGTCCCTGCTCGGTACCTTGTTCCATCGCGGACGTCGTCCA
TGGCCACAGATTTGTTCAAAGATTCGTGATAATATTGAAGAACCCATAAT
CCGGAGTAGGATTCACCATTACAGAAAATCAGGCCTTGGAGCTCATGCGT
TCAACTGTTCGATCTGATTCAAGGTCACCCGGATGAATTGGACGATGACA
ACCTGGAGGGAGAAGGATTTTTTGGTCGACGCTTTGCTTAGCATTGTCGG
CGGCTCTAGCGAAGACGGCGAAGGAGGGCGGGTAGATAGTGGGTCGGGAA
ACGGGCGAGTCGATGTGGTGGGGAGCGGCAGTATTGGCGAAATTTCGAAC
GTCAGGGTTAGCCAGGACTCGTCGGCGGGCGGCGAAAGTCTTGAATGGAC
CGATGCCTTGCCGTTAGAGGATGCCGAGGTGTCGAAGCTGCTGCAAGAAT
TGGCTCTGGGGGGTGGGGAAGATGACGCGTCTCTCGGAGACTTCGACGAA
GATTTTTTGGGTCGACCTATCGATCTTGAGGAGGTATTTTCGTCCTCGCC
GAAATCGAACCTGGCGGGTGCCCACGGTTCAACGAGGAAAGAGTTATCCT
TTGGCCACTCTGATGTTGCGGGAGAGACAGCAGACTCTGCGGTGGGTGAA
ACCAAGGGATGAGGGTCAGGGTTTTCAGCCTTGCTGGTTTCGAATATCGT
CTGCTTGTATCTGTGGTGCGGGATTGTTTGTGTCTGGGTGACAAACTTGA
AAGACTGTATGGTGTTCTGACGGTCATCCCCGGGGTCTTCTTGTCAATTT
ATACGAGTTATTCGATGGAGTGCAGTGTTGCACATACTTGCCGTTTGTGC
CACAAGATA
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Coding sequence (CDS) from alignment at P-littoralis_Contig685:111344..113752-

>mRNA_P-littoralis_Contig685.26.1 ID=mRNA_P-littoralis_Contig685.26.1|Name=mRNA_P-littoralis_Contig685.26.1|organism=Pylaiella littoralis U1_48|type=CDS|length=624bp|location=Sequence derived from alignment at P-littoralis_Contig685:111344..113752- (Pylaiella littoralis U1_48)
ATGTGGTCTCCGGATCGAAGGAGGGGTCCGGACCATCGCCAGTCAAGCCG
AGAGACGTGTTCATGGGAGTGGATTCACCCGCAGAGGATAGCGACGACCG
CGCGCATGGAGGTGATTCTCCAACGCCAATCCAAGGTCACCCGGATGAAT
TGGACGATGACAACCTGGAGGGAGAAGGATTTTTTGGTCGACGCTTTGCT
TAGCATTGTCGGCGGCTCTAGCGAAGACGGCGAAGGAGGGCGGGTAGATA
GTGGGTCGGGAAACGGGCGAGTCGATGTGGTGGGGAGCGGCAGTATTGGC
GAAATTTCGAACGTCAGGGTTAGCCAGGACTCGTCGGCGGGCGGCGAAAG
TCTTGAATGGACCGATGCCTTGCCGTTAGAGGATGCCGAGGTGTCGAAGC
TGCTGCAAGAATTGGCTCTGGGGGGTGGGGAAGATGACGCGTCTCTCGGA
GACTTCGACGAAGATTTTTTGGGTCGACCTATCGATCTTGAGGAGGTATT
TTCGTCCTCGCCGAAATCGAACCTGGCGGGTGCCCACGGTTCAACGAGGA
AAGAGTTATCCTTTGGCCACTCTGATGTTGCGGGAGAGACAGCAGACTCT
GCGGTGGGTGAAACCAAGGGATGA
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