mRNA_P-littoralis_Contig685.23.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig685.23.1
Unique NamemRNA_P-littoralis_Contig685.23.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig685.23.1 vs. uniprot
Match: A0A6H5KVF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF4_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 3.820e-13
Identity = 38/50 (76.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:  169 NFVLFGAGLPMQGSTRTPDRTASAGNQRRHTTPSLSTQAWEESRGAPRQR 318
              ++ G+ LPMQGST TPDR A AG+QRRHTTPSLSTQAWEESRGA RQR
Sbjct:   47 GLIINGSVLPMQGSTHTPDRPARAGSQRRHTTPSLSTQAWEESRGARRQR 96
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BLAST of mRNA_P-littoralis_Contig685.23.1 vs. uniprot
Match: A0A6H5L5M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M0_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 2.430e-12
Identity = 38/45 (84.44%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:  184 GAGLPMQGSTRTPDRTASAGNQRRHTTPSLSTQAWEESRGAPRQR 318
            GAGLPMQ ST TPDR   AGNQRRHTTPS STQAWEESRGA RQR
Sbjct:   37 GAGLPMQRSTHTPDRPTIAGNQRRHTTPSPSTQAWEESRGARRQR 81
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BLAST of mRNA_P-littoralis_Contig685.23.1 vs. uniprot
Match: D7FZI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI2_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 1.610e-11
Identity = 36/48 (75.00%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:  175 VLFGAGLPMQGSTRTPDRTASAGNQRRHTTPSLSTQAWEESRGAPRQR 318
            ++ G+ LPMQGS  TPDR A  G+QRRHTTPSLSTQAWEESRGA RQR
Sbjct:   49 IINGSVLPMQGSQHTPDRPAREGSQRRHTTPSLSTQAWEESRGARRQR 96
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BLAST of mRNA_P-littoralis_Contig685.23.1 vs. uniprot
Match: D7G2I2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2I2_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 9.910e-11
Identity = 35/40 (87.50%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:  199 MQGSTRTPDRTASAGNQRRHTTPSLSTQAWEESRGAPRQR 318
            MQGST TPDR A AG+QRRHTTPSLSTQAWEESRGA RQR
Sbjct:    1 MQGSTHTPDRPARAGSQRRHTTPSLSTQAWEESRGARRQR 40
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BLAST of mRNA_P-littoralis_Contig685.23.1 vs. uniprot
Match: A0A6H5KEF8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEF8_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 2.150e-9
Identity = 33/38 (86.84%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:  205 GSTRTPDRTASAGNQRRHTTPSLSTQAWEESRGAPRQR 318
            GST TPDR A AG+QRRHTTPSLSTQAWEESRGA RQR
Sbjct:   74 GSTHTPDRPARAGSQRRHTTPSLSTQAWEESRGARRQR 111
[Close]
BLAST of mRNA_P-littoralis_Contig685.23.1 vs. uniprot
Match: A0A6H5K6I9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6I9_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 9.380e-6
Identity = 27/34 (79.41%), Postives = 27/34 (79.41%), Query Frame = 1 
Query:  199 MQGSTRTPDRTASAGNQRRHTTPSLSTQAWEESR 300
            MQ ST TPDR    GNQRRHTTP LSTQAWEESR
Sbjct:    1 MQRSTHTPDRPTITGNQRRHTTPPLSTQAWEESR 34
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig685.23.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KVF4_9PHAE3.820e-1376.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5M0_9PHAE2.430e-1284.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZI2_ECTSI1.610e-1175.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G2I2_ECTSI9.910e-1187.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KEF8_9PHAE2.150e-986.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6I9_9PHAE9.380e-679.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig685contigP-littoralis_Contig685:107140..109026 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size319
Hectar predicted targeting categorysignal peptide
Exons3
Cds size201
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791422.3955715-UTR-P-littoralis_Contig685:107139..1072221680791422.3955715-UTR-P-littoralis_Contig685:107139..107222Pylaiella littoralis U1_48UTRP-littoralis_Contig685 107140..107222 +
1680791422.4127393-UTR-P-littoralis_Contig685:108062..1080961680791422.4127393-UTR-P-littoralis_Contig685:108062..108096Pylaiella littoralis U1_48UTRP-littoralis_Contig685 108063..108096 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791422.428011-CDS-P-littoralis_Contig685:108096..1081631680791422.428011-CDS-P-littoralis_Contig685:108096..108163Pylaiella littoralis U1_48CDSP-littoralis_Contig685 108097..108163 +
1680791422.444507-CDS-P-littoralis_Contig685:108892..1090261680791422.444507-CDS-P-littoralis_Contig685:108892..109026Pylaiella littoralis U1_48CDSP-littoralis_Contig685 108893..109026 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig685.23.1prot_P-littoralis_Contig685.23.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig685 108097..109026 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig685.23.1

>prot_P-littoralis_Contig685.23.1 ID=prot_P-littoralis_Contig685.23.1|Name=mRNA_P-littoralis_Contig685.23.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=67bp
MTFRGPPSVKLAFLLFINFVLFGAGLPMQGSTRTPDRTASAGNQRRHTTP
SLSTQAWEESRGAPRQR
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mRNA from alignment at P-littoralis_Contig685:107140..109026+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig685.23.1 ID=mRNA_P-littoralis_Contig685.23.1|Name=mRNA_P-littoralis_Contig685.23.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1887bp|location=Sequence derived from alignment at P-littoralis_Contig685:107140..109026+ (Pylaiella littoralis U1_48)
GGGGGGTCGGACAAAACTGGCGAACATGCTCGCCACGCAGCCCTCACGCT
CGTCTCTGAGCGCACGGGTCGCTGCGCAAGAAGGTTAGGAGCAATCAGTA
TGTAAGGCTGGCTTTCTCGGATACAAGTCCGTTTGTCAAACGGTGTAGTG
TACGCAGAGCAATATCCAAACAGCGGATCACAACTGCACAACGTCGCCGA
GGGTGTCCAGGGACCCTGAAAAGTAGCCTACTTCTCGGGCATACAATTGT
ACGCATATCTTAAAGTCTAATAATAACTTGAAAAACTAGCTCTACTGTCG
TATAACCCACGTGTGTGTCACGCTGGGGTACACGGCGCTGAGGGTGAAGA
ACAACCCCGCAACCGGGGCAAATAGGTGGTGCGCAGCACCGCAGCACCTC
GTTGAGGGTTAGGGCGAATCCAATATACGCTGCTTCGACCAAGACTGTAT
GTGTTTCCTTGCCACATTGCGTTTGGTAGTTCATCACGGTATGCGACGAC
GGGCTCACTTCCGGTGCATCCGTCACCACATATTTTCTACTTGTTGGTGC
AACACAGCAGCAGTGTTTAGATAACAGCTGGTAGATACCTTGCTAATAAT
GAAAATGTTCGACAGACGAAGTGAATGTATGTCCCCATTTATTTTCTTAT
CTAATCTAGTCTTGGTAGACGTCTGGTAGAGGCGTAAAATAAGTGGAAGG
TGATAGATAGGGAGGGGTAAAGGACAGCATCACATCACCTTTCTGCCTGG
TATTTCTGTGGAACTGGTATTGTTGAGAATGTCACCACAAAGTCAAAGCA
TACTTCGTTATTTTTTTTAATAGTCCAAGCACAACCACAGGCCCTTGATT
GCATGTAACACCGTCTATTCCTGCTGCAGCATGCCCACTCTCCGTCGCCC
CTCGCCCCCTCGCCCGTACGCAGGATTACCTTTGATTCATGAGAGTGGGT
ACTGCTCATGACTTTTCGGGGACCACCGTCAGTTAAACTGGCATTCCTCT
TGTTCATCAACTTCGTTCTATTCGGTGAGCTTTATTGTGTTGAACGATTC
TTCTTGTGTAGCTTGTCCAAATACATTTGAGGCCGCAGCCGATTTCGACG
TACTGTGGGACTATTTCAGTTATTGCATGTCGGGTAAGTCCAGCTTCACA
TAGGCCATGTCCTCCCGCTGGTCGTCCGTTCCAGGTAGTATGAAGGCTTG
AAAGGGTGTTATCGGTAGGGTTAGACTAACTGCCACGCCGCAGTTCCACG
CCACAGTTGGTTCCGCGCACCTTCGAATCTAGCTTCGCCCTCCCTTCATA
AACAGAGAAAAAAACTACTCCAAGTCTGACCGACCGCGTCTTATCTATTA
TTTATTTATCTTTTTCGCTCCGACTTCGAGTTTGTCCTGCGACTGGCTTT
CTTGCTGGATAAATGTGTGCTCCCCCCTGCGCCTTGTGGCGGCGCTGATG
ATCTTGTTTTCAATGTCCCCGTTGTATCTGGGTGTTGACACAATACGGTC
AACCCCAAGACAATTCAGGGATCACCTTCTTGGCGCCGTGGTTGTTTGTG
GAATTCCACGATCGACCTCCCAGTGTTCCTTCAAACACGAACGATCGTAA
CTCCCGGAATGCTACCGTTGCATGTTGTGCTATGGAGCGGGGACGTGCGT
TTTTTTATCCATTTGCATGGTATGGATATACCAAGGAACACTATGCGTGC
TGCATTTTGAACAGACAACACATGCGCTTTGCTACCCTGTCATCCAAACC
CAGGGGCAGGACTACCGATGCAGGGATCTACCCGCACGCCAGACAGGACC
GCAAGCGCGGGGAATCAACGACGGCACACGACGCCATCGCTGAGCACGCA
GGCTTGGGAGGAAAGCAGGGGGGCTCCGCGCCAACGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig685:107140..109026+

>mRNA_P-littoralis_Contig685.23.1 ID=mRNA_P-littoralis_Contig685.23.1|Name=mRNA_P-littoralis_Contig685.23.1|organism=Pylaiella littoralis U1_48|type=CDS|length=201bp|location=Sequence derived from alignment at P-littoralis_Contig685:107140..109026+ (Pylaiella littoralis U1_48)
ATGACTTTTCGGGGACCACCGTCAGTTAAACTGGCATTCCTCTTGTTCAT
CAACTTCGTTCTATTCGGGGCAGGACTACCGATGCAGGGATCTACCCGCA
CGCCAGACAGGACCGCAAGCGCGGGGAATCAACGACGGCACACGACGCCA
TCGCTGAGCACGCAGGCTTGGGAGGAAAGCAGGGGGGCTCCGCGCCAACG
T
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