mRNA_P-littoralis_Contig685.14.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig685.14.1
Unique NamemRNA_P-littoralis_Contig685.14.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig685.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig685contigP-littoralis_Contig685:67437..68086 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size650
Hectar predicted targeting categoryother localisation
Exons1
Cds size357
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791421.8138738-UTR-P-littoralis_Contig685:67436..675471680791421.8138738-UTR-P-littoralis_Contig685:67436..67547Pylaiella littoralis U1_48UTRP-littoralis_Contig685 67437..67547 +
1680791421.838481-UTR-P-littoralis_Contig685:67904..680861680791421.838481-UTR-P-littoralis_Contig685:67904..68086Pylaiella littoralis U1_48UTRP-littoralis_Contig685 67905..68086 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791421.8266962-CDS-P-littoralis_Contig685:67547..679041680791421.8266962-CDS-P-littoralis_Contig685:67547..67904Pylaiella littoralis U1_48CDSP-littoralis_Contig685 67548..67904 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig685.14.1prot_P-littoralis_Contig685.14.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig685 67548..67904 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig685.14.1

>prot_P-littoralis_Contig685.14.1 ID=prot_P-littoralis_Contig685.14.1|Name=mRNA_P-littoralis_Contig685.14.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=119bp
MKKPMSSSSSNSKNISLITPRLFVVHAFFHQPVLHYVHSFCFQASPDDCG
RPKNVQLGLGVLCCMCVGVRSVLKGSLQISSNSTATCSSKLSVERKQHFC
VSDLTAAACGDVEPFFSR*
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mRNA from alignment at P-littoralis_Contig685:67437..68086+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig685.14.1 ID=mRNA_P-littoralis_Contig685.14.1|Name=mRNA_P-littoralis_Contig685.14.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=650bp|location=Sequence derived from alignment at P-littoralis_Contig685:67437..68086+ (Pylaiella littoralis U1_48)
AACTCAAAGAACACGCACGCACACATACACATACACACCACACGTCCCCA
TAACCAAATCAGCCCCGCCCAGCGCTCCGCCCGGAATAATAAGCCCTCGC
GTGTCTGGGGAATGAAGAAGCCAATGAGCAGCAGCAGCAGCAACAGCAAA
AATATCAGCCTCATCACACCTCGTTTGTTTGTTGTTCACGCTTTTTTCCA
CCAACCAGTCCTCCATTATGTTCATTCGTTTTGTTTTCAAGCGAGCCCCG
ACGACTGCGGCCGTCCAAAGAACGTCCAGCTAGGGTTAGGGGTGCTTTGC
TGCATGTGTGTGGGCGTGCGTTCAGTGTTGAAAGGAAGCCTTCAAATATC
AAGCAACTCAACGGCCACTTGCAGCAGCAAGCTTTCGGTCGAAAGAAAGC
AGCATTTCTGTGTTTCAGATCTGACTGCTGCTGCATGCGGTGATGTGGAA
CCATTTTTCAGTCGATAGAACAGTAATCATTTTTCCGAGTATGTGAAAAG
GCCAGATTTGTCCTTCTGTTGGGAGTTAAAAAAACAAGTGATGCTTCTCT
CTGCGGATTGAATGAGCCCACCTCCAACCCAACGCCCCACCAACGGAGAG
CAGCAAACGAGGGCGACAGCCAGGAAGGGTTCCCGCCAATTGGTGGGAGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig685:67437..68086+

>mRNA_P-littoralis_Contig685.14.1 ID=mRNA_P-littoralis_Contig685.14.1|Name=mRNA_P-littoralis_Contig685.14.1|organism=Pylaiella littoralis U1_48|type=CDS|length=357bp|location=Sequence derived from alignment at P-littoralis_Contig685:67437..68086+ (Pylaiella littoralis U1_48)
ATGAAGAAGCCAATGAGCAGCAGCAGCAGCAACAGCAAAAATATCAGCCT
CATCACACCTCGTTTGTTTGTTGTTCACGCTTTTTTCCACCAACCAGTCC
TCCATTATGTTCATTCGTTTTGTTTTCAAGCGAGCCCCGACGACTGCGGC
CGTCCAAAGAACGTCCAGCTAGGGTTAGGGGTGCTTTGCTGCATGTGTGT
GGGCGTGCGTTCAGTGTTGAAAGGAAGCCTTCAAATATCAAGCAACTCAA
CGGCCACTTGCAGCAGCAAGCTTTCGGTCGAAAGAAAGCAGCATTTCTGT
GTTTCAGATCTGACTGCTGCTGCATGCGGTGATGTGGAACCATTTTTCAG
TCGATAG
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