mRNA_P-littoralis_Contig685.27.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig685.27.1
Unique NamemRNA_P-littoralis_Contig685.27.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig685.27.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig685contigP-littoralis_Contig685:111998..112366 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size217
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size138
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791421.6768115-UTR-P-littoralis_Contig685:111997..1120351680791421.6768115-UTR-P-littoralis_Contig685:111997..112035Pylaiella littoralis U1_48UTRP-littoralis_Contig685 111998..112035 -
1680791421.7219818-UTR-P-littoralis_Contig685:112325..1123661680791421.7219818-UTR-P-littoralis_Contig685:112325..112366Pylaiella littoralis U1_48UTRP-littoralis_Contig685 112326..112366 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791421.6875913-CDS-P-littoralis_Contig685:112035..1121431680791421.6875913-CDS-P-littoralis_Contig685:112035..112143Pylaiella littoralis U1_48CDSP-littoralis_Contig685 112036..112143 -
1680791421.7056346-CDS-P-littoralis_Contig685:112295..1123251680791421.7056346-CDS-P-littoralis_Contig685:112295..112325Pylaiella littoralis U1_48CDSP-littoralis_Contig685 112296..112325 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig685.27.1prot_P-littoralis_Contig685.27.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig685 112036..112325 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig685.27.1

>prot_P-littoralis_Contig685.27.1 ID=prot_P-littoralis_Contig685.27.1|Name=mRNA_P-littoralis_Contig685.27.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=46bp
MEVILQRQSKICSKIRDNIEEPIIRSRIHHYRKSGLGAHAFNCSI*
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mRNA from alignment at P-littoralis_Contig685:111998..112366-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig685.27.1 ID=mRNA_P-littoralis_Contig685.27.1|Name=mRNA_P-littoralis_Contig685.27.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=369bp|location=Sequence derived from alignment at P-littoralis_Contig685:111998..112366- (Pylaiella littoralis U1_48)
GGGAGTGGATTCACCCGCAGAGGATAGCGACGACCGCGCGCATGGAGGTG
ATTCTCCAACGCCAATCCAAGGTACCTTTGGCTATTTTGCAAAACACACT
ACGGGTTCTGACCCTTGAACGTCTGCAGTGGTTGCCGTTGTTTGTCACAT
GCTAAAACAAAAATATGACTCCCTGTCCCTGCTCGGTACCTTGTTCCATC
GCGGACGTCGTCCATGGCCACAGATTTGTTCAAAGATTCGTGATAATATT
GAAGAACCCATAATCCGGAGTAGGATTCACCATTACAGAAAATCAGGCCT
TGGAGCTCATGCGTTCAACTGTTCGATCTGATTCAAGGTCACCCGGATGA
ATTGGACGATGACAACCTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig685:111998..112366-

>mRNA_P-littoralis_Contig685.27.1 ID=mRNA_P-littoralis_Contig685.27.1|Name=mRNA_P-littoralis_Contig685.27.1|organism=Pylaiella littoralis U1_48|type=CDS|length=138bp|location=Sequence derived from alignment at P-littoralis_Contig685:111998..112366- (Pylaiella littoralis U1_48)
ATGGAGGTGATTCTCCAACGCCAATCCAAGATTTGTTCAAAGATTCGTGA
TAATATTGAAGAACCCATAATCCGGAGTAGGATTCACCATTACAGAAAAT
CAGGCCTTGGAGCTCATGCGTTCAACTGTTCGATCTGA
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