mRNA_P-littoralis_Contig685.21.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig685.21.1
Unique NamemRNA_P-littoralis_Contig685.21.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig685.21.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig685contigP-littoralis_Contig685:106208..107122 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size167
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size159
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791421.6140282-CDS-P-littoralis_Contig685:106207..1062891680791421.6140282-CDS-P-littoralis_Contig685:106207..106289Pylaiella littoralis U1_48CDSP-littoralis_Contig685 106208..106289 +
1680791421.6317225-CDS-P-littoralis_Contig685:107039..1071161680791421.6317225-CDS-P-littoralis_Contig685:107039..107116Pylaiella littoralis U1_48CDSP-littoralis_Contig685 107040..107116 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791421.643403-UTR-P-littoralis_Contig685:107116..1071221680791421.643403-UTR-P-littoralis_Contig685:107116..107122Pylaiella littoralis U1_48UTRP-littoralis_Contig685 107117..107122 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig685.21.1prot_P-littoralis_Contig685.21.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig685 106208..107116 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig685.21.1

>prot_P-littoralis_Contig685.21.1 ID=prot_P-littoralis_Contig685.21.1|Name=mRNA_P-littoralis_Contig685.21.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=53bp
LLVSHLVSALAPSQARLAAKEGGPIVNVPSQARLAAKEGCPIVNRESRKR
KT*
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mRNA from alignment at P-littoralis_Contig685:106208..107122+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig685.21.1 ID=mRNA_P-littoralis_Contig685.21.1|Name=mRNA_P-littoralis_Contig685.21.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=915bp|location=Sequence derived from alignment at P-littoralis_Contig685:106208..107122+ (Pylaiella littoralis U1_48)
CTACTGGTCTCGCACTTGGTGTCCGCTCTAGCACCATCACAGGCCCGGCT
GGCGGCGAAGGAAGGAGGCCCAATCGTCAACGGTGAGTCGAGAAAAAGGA
AAACATGACCAAACATGACCATAGGAGATCCGGGGGGTCGGACAAAACTG
GCGAACATGGTCGCCACGCAGCCCTCACGCTCGTCTCTGAGCGCACGGGT
TGCTGCGCAACAAGGTTAGGAACATAGAGTGTGTAAGTCTGGCTTTCTCG
GACAGAAGTCCGTTTGTCAAACGGTGTAGTGTACGCAGAGCAATGTCCAA
ACTTCGGACCCATAACCGTCACAGTGCTGTATCTCTCCGCTTGGGCACAC
TAAAATGGACTGGTTTGTCAAGCAGTTTGTTTGCACAATCAGAACGCTGT
CCTCCTGCTGCAACAGCTGAACCCCGCAGCATAACCTCCCCAACATGTTG
CACAGCACCACCTCAGTAGAAGCTGGGGGAGTGCTGCACACCCTGTCATG
TAGCACAGCCGCGTCAGACGCTTTTTTTGTCACTTGTGTCTCAATATTGT
CACGGACCCACCGCCGTGTTCGACTCAAGATAACACACCCCCTAGACCGA
CAATCAAAGCACGATTATCGACAACTATGGTACATGACTATTAAAAGAAC
AACTTGGACGGTAACTGTACGAGATCTCCGAAAGTGCGCTCGATTGAGGG
TTCTCATTCTAAGAAGGCGTGCACGGCACATGCGGGGACACATCAGGACA
GGACCCTCTGCACCAGCCCTTTACCGTACACCCATCCGATAGCTCGAGCA
TCTACTGGTCTCGCACTCGGTGTGCGCTCTAGTACCATCACAGGCCCGGC
TGGCGGCGAAGGAAGGGTGCCCAATCGTCAACCGTGAGTCGAGAAAAAGG
AAAACATGACCAAAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig685:106208..107122+

>mRNA_P-littoralis_Contig685.21.1 ID=mRNA_P-littoralis_Contig685.21.1|Name=mRNA_P-littoralis_Contig685.21.1|organism=Pylaiella littoralis U1_48|type=CDS|length=159bp|location=Sequence derived from alignment at P-littoralis_Contig685:106208..107122+ (Pylaiella littoralis U1_48)
CTACTGGTCTCGCACTTGGTGTCCGCTCTAGCACCATCACAGGCCCGGCT
GGCGGCGAAGGAAGGAGGCCCAATCGTCAACGTACCATCACAGGCCCGGC
TGGCGGCGAAGGAAGGGTGCCCAATCGTCAACCGTGAGTCGAGAAAAAGG
AAAACATGA
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