mRNA_P-littoralis_Contig684.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig684.7.1
Unique NamemRNA_P-littoralis_Contig684.7.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig684.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig684contigP-littoralis_Contig684:122508..122865 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size358
Hectar predicted targeting categoryother localisation
Exons1
Cds size303
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791421.4883533-UTR-P-littoralis_Contig684:122507..1225251680791421.4883533-UTR-P-littoralis_Contig684:122507..122525Pylaiella littoralis U1_48UTRP-littoralis_Contig684 122508..122525 -
1680791421.519459-UTR-P-littoralis_Contig684:122828..1228651680791421.519459-UTR-P-littoralis_Contig684:122828..122865Pylaiella littoralis U1_48UTRP-littoralis_Contig684 122829..122865 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791421.5047686-CDS-P-littoralis_Contig684:122525..1228281680791421.5047686-CDS-P-littoralis_Contig684:122525..122828Pylaiella littoralis U1_48CDSP-littoralis_Contig684 122526..122828 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig684.7.1prot_P-littoralis_Contig684.7.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig684 122526..122828 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig684.7.1

>prot_P-littoralis_Contig684.7.1 ID=prot_P-littoralis_Contig684.7.1|Name=mRNA_P-littoralis_Contig684.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=101bp
MIVFISSFFFNSGAKRIRKAHSDLPREDVLAHDVIGRINPASSEPTTICP
RLATSGQPLAGESDERNPALSLEVVCREIVATTRRPNIRHVQIVPRYGTL
*
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mRNA from alignment at P-littoralis_Contig684:122508..122865-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig684.7.1 ID=mRNA_P-littoralis_Contig684.7.1|Name=mRNA_P-littoralis_Contig684.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=358bp|location=Sequence derived from alignment at P-littoralis_Contig684:122508..122865- (Pylaiella littoralis U1_48)
CTGGTGTTCCCTCGAGAGGCCCCGTGATTGCCGCGAGATGATAGTTTTTA
TCTCTAGCTTTTTTTTTAATTCTGGAGCAAAAAGGATCCGAAAAGCACAT
TCAGATCTGCCAAGAGAGGATGTGTTGGCACACGATGTGATCGGTCGAAT
CAACCCGGCATCATCCGAACCGACAACAATATGCCCGCGGCTTGCGACAA
GTGGGCAACCCTTGGCTGGCGAAAGTGACGAGCGAAACCCAGCGTTGTCG
CTAGAGGTGGTCTGCAGGGAGATAGTGGCGACGACTCGTCGGCCCAACAT
TCGGCATGTTCAAATCGTTCCGCGCTATGGCACACTTTGAGCGGGGTAGC
GTGTACGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig684:122508..122865-

>mRNA_P-littoralis_Contig684.7.1 ID=mRNA_P-littoralis_Contig684.7.1|Name=mRNA_P-littoralis_Contig684.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=303bp|location=Sequence derived from alignment at P-littoralis_Contig684:122508..122865- (Pylaiella littoralis U1_48)
ATGATAGTTTTTATCTCTAGCTTTTTTTTTAATTCTGGAGCAAAAAGGAT
CCGAAAAGCACATTCAGATCTGCCAAGAGAGGATGTGTTGGCACACGATG
TGATCGGTCGAATCAACCCGGCATCATCCGAACCGACAACAATATGCCCG
CGGCTTGCGACAAGTGGGCAACCCTTGGCTGGCGAAAGTGACGAGCGAAA
CCCAGCGTTGTCGCTAGAGGTGGTCTGCAGGGAGATAGTGGCGACGACTC
GTCGGCCCAACATTCGGCATGTTCAAATCGTTCCGCGCTATGGCACACTT
TGA
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