mRNA_P-littoralis_Contig117.149.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-littoralis_Contig117.149.1
Unique Name	mRNA_P-littoralis_Contig117.149.1
Type	mRNA
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))

Homology

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BLAST of mRNA_P-littoralis_Contig117.149.1 vs. uniprot
Match: A0A6H5K630_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K630_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 4.320e-48
Identity = 84/119 (70.59%), Postives = 95/119 (79.83%), Query Frame = 2

Query:    2 RDGLGSHRNPTATQAKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRPRAAPVVEGSASQESTPASAGQTIEVVNPY 358
            R GLGSHRNPTATQAKERAARGDLNR L G SRANHNR +R+G D+IASG R +I+LP+T+ ERSATMR  S N  +AV+F RY+S  +PRA P VEG ASQESTPASAGQT  V N Y
Sbjct:    2 RQGLGSHRNPTATQAKERAARGDLNRGLRGGSRANHNRTSRKGSDFIASGVRGQIILPVTDEERSATMRAPSRNPASAVMFSRYLSVVKPRADPTVEGGASQESTPASAGQTPVVFNSY 120

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BLAST of mRNA_P-littoralis_Contig117.149.1 vs. uniprot
Match: A0A6H5K5X1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5X1_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 1.420e-42
Identity = 82/117 (70.09%), Postives = 93/117 (79.49%), Query Frame = 2

Query:    8 GLGSHRNPTATQAKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRPRAAPVVEGSASQESTPASAGQTIEVVNPY 358
            GLGSH NPT  +AKERA RGDL RSLHG SRA HN+NAR+G+D+IASG R RI+LP+T+ ERSATMR  S N  +AV+FPRYIS D+P A PVV GSASQEST A AGQT  V NPY
Sbjct:  542 GLGSHSNPTCAEAKERAERGDLQRSLHGVSRAKHNQNARKGEDFIASGIRGRIILPVTDAERSATMRAPSKNPASAVMFPRYISIDKPHADPVVGGSASQESTAAPAGQTPVVFNPY 658

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BLAST of mRNA_P-littoralis_Contig117.149.1 vs. uniprot
Match: A0A6H5KB63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB63_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 2.590e-35
Identity = 64/90 (71.11%), Postives = 73/90 (81.11%), Query Frame = 2

Query:    2 RDGLGSHRNPTATQAKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRP 271
            R  LGSH NP A QAKER ARGDL RSLHG SRANHN+NAR+G+D+IASG R RIMLP+T+ ERSATMR  S N  +AV+FPRYIS D+P
Sbjct:    2 RQSLGSHSNPIAAQAKERTARGDLQRSLHGVSRANHNKNARKGEDFIASGIRGRIMLPVTDAERSATMRAPSRNPVSAVMFPRYISIDKP 91

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BLAST of mRNA_P-littoralis_Contig117.149.1 vs. uniprot
Match: A0A6H5KZP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZP5_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 3.600e-35
Identity = 66/97 (68.04%), Postives = 77/97 (79.38%), Query Frame = 2

Query:   68 DLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRPRAAPVVEGSASQESTPASAGQTIEVVNPY 358
            DLNR LHG SRANHNR +R+G D+IASG R +I+LP+T+ ERSATMR  S N  +AV+FPRY+S  +PRA P VEGSASQESTPASAGQ   V NPY
Sbjct:   89 DLNRGLHGGSRANHNRTSRKGNDFIASGVRGQIILPVTDEERSATMRAPSRNPASAVMFPRYLSVVKPRADPTVEGSASQESTPASAGQIPVVFNPY 185

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BLAST of mRNA_P-littoralis_Contig117.149.1 vs. uniprot
Match: A0A6H5L2C2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2C2_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 1.910e-33
Identity = 63/90 (70.00%), Postives = 74/90 (82.22%), Query Frame = 2

Query:    2 RDGLGSHRNPTATQAKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRP 271
            R GLGSHRNPTATQAKERAARGDLNR L G SRANHNR +R+G D+IASG R +I+LP+T+ ERSATMR  S N  +AV+FPRY+S  +P
Sbjct:   77 RQGLGSHRNPTATQAKERAARGDLNRGLQGGSRANHNRTSRKGNDFIASGVRGQIILPVTDEERSATMRAPSRNPASAVMFPRYLSVVKP 166

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BLAST of mRNA_P-littoralis_Contig117.149.1 vs. uniprot
Match: A0A6H5JS87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS87_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 1.650e-32
Identity = 62/90 (68.89%), Postives = 74/90 (82.22%), Query Frame = 2

Query:    2 RDGLGSHRNPTATQAKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRP 271
            R  LGS+ NPTA QAKERAARGDL RSLHG SRANHN+N R+G+++IASG R RIMLP+T+ ERSATMR  S N+ +AV+FPRYIS  +P
Sbjct:   67 RQSLGSNSNPTAAQAKERAARGDLYRSLHGVSRANHNKNERKGEEFIASGIRGRIMLPVTDAERSATMRAPSRNSVSAVMFPRYISIHKP 156

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BLAST of mRNA_P-littoralis_Contig117.149.1 vs. uniprot
Match: A0A6H5JR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 2.820e-30
Identity = 64/106 (60.38%), Postives = 78/106 (73.58%), Query Frame = 2

Query:    2 RDGLGSHRNPTATQAKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRPRAAPVVEGSASQESTP 319
            R GLGSHRNPTA QAKER ARGD+ R LHG  RAN+NRNAR+G+D++ASGYRA +MLP+ EGERS  +R  + ++  AVL P YIS   P A PV +GSA +   P
Sbjct:  670 RQGLGSHRNPTAAQAKERGARGDILRGLHGPCRANYNRNARKGRDFVASGYRAEVMLPVGEGERSVRIRARTKDSDEAVLSPWYISVAAPGATPVADGSAVESGAP 775

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BLAST of mRNA_P-littoralis_Contig117.149.1 vs. uniprot
Match: A0A6H5K6I9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6I9_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 9.430e-30
Identity = 69/119 (57.98%), Postives = 82/119 (68.91%), Query Frame = 2

Query:    2 RDGLGSHRNPTATQAKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRPRAAPVVEGSASQESTPASAGQTIEVVNPY 358
            R GLG+ RNPTA QAKER+ RGDLNR LHG SRAN NRNAR G D+I S YR+RIML +T+ E +  +R  S N+P AVL PRYIS +   AAPVVE        PA+ G +  +VNPY
Sbjct:  248 RAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSGNDFIDSDYRSRIMLAVTQAEAAENVRARSRNSPNAVLCPRYISVEPLAAAPVVEAPV-----PAAQGSST-IVNPY 360

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BLAST of mRNA_P-littoralis_Contig117.149.1 vs. uniprot
Match: D7FZI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI2_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 6.840e-27
Identity = 67/119 (56.30%), Postives = 79/119 (66.39%), Query Frame = 2

Query:    2 RDGLGSHRNPTATQAKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRPRAAPVVEGSASQESTPASAGQTIEVVNPY 358
            R GLG+ RNPTA QAKER+ RGDLNR LHG SRAN NRNAR G D+  S YR RIML +T+   +  +R  S N+P AVL PRYIS +   A PVVE      S PA+ G +  +VNPY
Sbjct:  920 RAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSGDDFNVSDYRGRIMLAVTQAVAAENVRSRSRNSPNAVLCPRYISVEPLAATPVVE-----TSVPAAQGSST-IVNPY 1032

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BLAST of mRNA_P-littoralis_Contig117.149.1 vs. uniprot
Match: A0A6H5K731_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K731_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 1.240e-19
Identity = 44/68 (64.71%), Postives = 55/68 (80.88%), Query Frame = 2

Query:   86 HGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRPRAAPVV 289
            HG SRANH +NAR+G+D+IASG R RIMLP+++ ERSATMR  S +  +AV+FPRYIS D+P A PVV
Sbjct:   43 HGVSRANHIKNARKGEDFIASGIRGRIMLPVSDAERSATMRAPSRDPVSAVMFPRYISIDKPHADPVV 110

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig117.149.1 vs. uniprot

BLAST of mRNA_P-littoralis_Contig117.149.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12


Match Name	E-value	Identity	Description
A0A6H5K630_9PHAE	4.320e-48	70.59	Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K5X1_9PHAE	1.420e-42	70.09	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KB63_9PHAE	2.590e-35	71.11	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KZP5_9PHAE	3.600e-35	68.04	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L2C2_9PHAE	1.910e-33	70.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JS87_9PHAE	1.650e-32	68.89	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JR14_9PHAE	2.820e-30	60.38	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K6I9_9PHAE	9.430e-30	57.98	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FZI2_ECTSI	6.840e-27	56.30	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5K731_9PHAE	1.240e-19	64.71	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig117	contig	P-littoralis_Contig117:529785..530207 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Model size	423
Hectar predicted targeting category	other localisation
Exons	1
Cds size	201

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680789490.3195436-UTR-P-littoralis_Contig117:529784..529840	1680789490.3195436-UTR-P-littoralis_Contig117:529784..529840	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig117 529785..529840 -
1680789490.338637-UTR-P-littoralis_Contig117:530041..530207	1680789490.338637-UTR-P-littoralis_Contig117:530041..530207	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig117 530042..530207 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680789490.3300633-CDS-P-littoralis_Contig117:529840..530041	1680789490.3300633-CDS-P-littoralis_Contig117:529840..530041	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig117 529841..530041 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig117.149.1	prot_P-littoralis_Contig117.149.1	Pylaiella littoralis U1_48	polypeptide	P-littoralis_Contig117 529841..530041 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-littoralis_Contig117:529785..530207-
coding sequence from alignment at P-littoralis_Contig117:529785..530207-

protein sequence of mRNA_P-littoralis_Contig117.149.1

>prot_P-littoralis_Contig117.149.1 ID=prot_P-littoralis_Contig117.149.1|Name=mRNA_P-littoralis_Contig117.149.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=67bp
MLPITEGERSATMRPSSWNTPAAVLFPRYISYDRPRAAPVVEGSASQEST
PASAGQTIEVVNPYTR*

mRNA from alignment at P-littoralis_Contig117:529785..530207-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-littoralis_Contig117.149.1 ID=mRNA_P-littoralis_Contig117.149.1|Name=mRNA_P-littoralis_Contig117.149.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=423bp|location=Sequence derived from alignment at P-littoralis_Contig117:529785..530207- (Pylaiella littoralis U1_48)
GCGCGACGGCCTTGGGTCGCACAGAAACCCGACGGCTACGCAAGCGAAGG
AGAGGGCAGCACGGGGGGACCTGAATCGTAGTCTGCACGGGCGTTCCCGC
GCAAACCACAATCGGAATGCGCGGAGAGGACAGGACTACATCGCGTCCGG
ATACCGGGCACGGATCATGCTCCCAATAACGGAAGGAGAGCGGTCTGCTA
CCATGCGGCCTAGCTCCTGGAACACTCCCGCAGCTGTTCTGTTCCCGCGG
TACATCAGCTACGACAGACCCCGCGCGGCCCCTGTGGTAGAGGGTAGTGC
ATCCCAGGAGTCGACGCCCGCCTCTGCAGGCCAGACCATCGAGGTCGTCA
ACCCATACACTCGTTAATAGGTTTAGAAGGGGTAGGGTGACAATGGAGAG
AGAGGACGAGAAGATCGCAAGCC

Coding sequence (CDS) from alignment at P-littoralis_Contig117:529785..530207-

>mRNA_P-littoralis_Contig117.149.1 ID=mRNA_P-littoralis_Contig117.149.1|Name=mRNA_P-littoralis_Contig117.149.1|organism=Pylaiella littoralis U1_48|type=CDS|length=201bp|location=Sequence derived from alignment at P-littoralis_Contig117:529785..530207- (Pylaiella littoralis U1_48)
ATGCTCCCAATAACGGAAGGAGAGCGGTCTGCTACCATGCGGCCTAGCTC
CTGGAACACTCCCGCAGCTGTTCTGTTCCCGCGGTACATCAGCTACGACA
GACCCCGCGCGGCCCCTGTGGTAGAGGGTAGTGCATCCCAGGAGTCGACG
CCCGCCTCTGCAGGCCAGACCATCGAGGTCGTCAACCCATACACTCGTTA
A