mRNA_P-littoralis_Contig683.2.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig683.2.2
Unique NamemRNA_P-littoralis_Contig683.2.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig683.2.2 vs. uniprot
Match: D8LME5_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LME5_ECTSI)

HSP 1 Score: 196 bits (499), Expect = 8.720e-55
Identity = 116/225 (51.56%), Postives = 129/225 (57.33%), Query Frame = 1 
Query:   13 QSSLDLSLRWEGLVLKDVELRRDFMSELLGLPVDVPHAFVRRAVLHLPWYTLMLGSVVAKLEGVTIVMRGDASTAKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTGRQKQVPRWLKWILRRLKVKLVDVTLRYESVGMCPLQGAPAAAIEVTLGSLEVQPVSLQGASAWFQQQARAQQKSQQHQYRE 687
            +SSLDLSLRWEG+VLKDVELRRDF+SELLGLPVDVPHAFVRRAVLHLPWYTL+LG                                                                                      + GRQ+ +PRWLKW+LRRLKVKL DVTLRYESVGMCPLQGA  AA+EVTLGSLEVQPVSLQGASAWF++Q +A+ KS Q  YRE
Sbjct:  192 ESSLDLSLRWEGVVLKDVELRRDFLSELLGLPVDVPHAFVRRAVLHLPWYTLLLGP-------------------------------------------------------------------------------------KAGRQRPMPRWLKWVLRRLKVKLADVTLRYESVGMCPLQGAAPAAVEVTLGSLEVQPVSLQGASAWFKRQVQAEHKSLQ--YRE 329
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig683.2.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LME5_ECTSI8.720e-5551.56Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig683contigP-littoralis_Contig683:1067..4333 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size802
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionVacuolar protein sorting-associated protein 13A N-terminal domain
Ec32 orthologEc-05_002470.1
Cds size801
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791420.2230542-CDS-P-littoralis_Contig683:1066..12421680791420.2230542-CDS-P-littoralis_Contig683:1066..1242Pylaiella littoralis U1_48CDSP-littoralis_Contig683 1067..1242 +
1680791420.2345736-CDS-P-littoralis_Contig683:1870..21251680791420.2345736-CDS-P-littoralis_Contig683:1870..2125Pylaiella littoralis U1_48CDSP-littoralis_Contig683 1871..2125 +
1680791420.245382-CDS-P-littoralis_Contig683:2535..26561680791420.245382-CDS-P-littoralis_Contig683:2535..2656Pylaiella littoralis U1_48CDSP-littoralis_Contig683 2536..2656 +
1680791420.2625632-CDS-P-littoralis_Contig683:3584..37191680791420.2625632-CDS-P-littoralis_Contig683:3584..3719Pylaiella littoralis U1_48CDSP-littoralis_Contig683 3585..3719 +
1680791420.2731218-CDS-P-littoralis_Contig683:4219..43331680791420.2731218-CDS-P-littoralis_Contig683:4219..4333Pylaiella littoralis U1_48CDSP-littoralis_Contig683 4220..4333 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig683.2.2prot_P-littoralis_Contig683.2.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig683 1067..4333 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig683.2.2

>prot_P-littoralis_Contig683.2.2 ID=prot_P-littoralis_Contig683.2.2|Name=mRNA_P-littoralis_Contig683.2.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=267bp
EDGSQSSLDLSLRWEGLVLKDVELRRDFMSELLGLPVDVPHAFVRRAVLH
LPWYTLMLGSVVAKLEGVTIVMRGDASTAKAAAAAAATAAPRDSDGAAAP
QRGGGDGSDGHRHDQGPGSSCTAPPQQQQQQQQRAESGSSGRSRSRTGRQ
KQVPRWLKWILRRLKVKLVDVTLRYESVGMCPLQGAPAAAIEVTLGSLEV
QPVSLQGASAWFQQQARAQQKSQQHQYREELLLRGLAVSVEPLVDPPSPL
PPPAAGATTADNAGTSS
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mRNA from alignment at P-littoralis_Contig683:1067..4333+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig683.2.2 ID=mRNA_P-littoralis_Contig683.2.2|Name=mRNA_P-littoralis_Contig683.2.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=3267bp|location=Sequence derived from alignment at P-littoralis_Contig683:1067..4333+ (Pylaiella littoralis U1_48)
GAAGATGGATCGCAGTCCTCGCTCGACTTATCGTTGAGATGGGAGGGTTT
AGTCCTCAAGGACGTGGAGCTGCGGAGGGACTTTATGTCGGAGCTACTCG
GTTTACCGGTGGACGTACCGCACGCCTTCGTGAGGAGGGCGGTGCTGCAC
CTGCCGTGGTACACACTTATGCTCGGGTGAGTATTAGTAGAGGGTCAAGA
GGCGTTCGTGACGAAGGTGCTGCTGCTGCTGCACCTGCCGTGGCACGTGG
CGCTCACAGGCTCTCGTTCTCGGATGGGTTTTGTAGAGAGTTGGAGGGCG
GACGTGAGGAGGGCGGTGCTGGCTTGCCATATGGTGCACGCTCGTGCTCT
GGGTGAGGTTTTGTAGAGAGCTAGAGGGCGGGCGTGGGGAGGGCGGCGCT
GGCTTGCCATGGTGCACGCTCGTGCTCGCGGGTGAGGTTTACCCGGACTT
TTGAACCGGACTCGCTTGTGCACGTAGGTTTTGCTTGTTGTTGTGGGAGC
TATTCATTCTCGTCCGTGCGGTGGCTTGTCTTATCTTGTCATGGGTGTTT
GGGATTCGGTCTCAATCGTGCTGGACTTGCCGGTGCTGTTTGTCGTCGGT
GTCGTCGCCGGTGGTGGTGGTGGTGGTGGTGGTACTGCGATAGTGGTGGC
GGTGTGCGGTTCGATGCGTCTGCTCTTGACTGCTCGGTGGTCAGTACAGC
ATTGCATGATAGCGTTTCGGCTGTTGTTTTGTATCACAAACATTAGTATG
TTCTGTGCGACACACCCGACCCTACTCCTGCCGGAACGATCCTCGCGCGT
ACAGGTCCGTCGTGGCCAAGCTGGAGGGAGTGACTATCGTGATGCGGGGA
GACGCGAGCACCGCCAAGGCGGCGGCGGCTGCGGCGGCAACAGCAGCACC
CCGGGACAGCGACGGCGCTGCTGCTCCCCAGCGGGGCGGTGGGGATGGGA
GTGATGGTCACCGTCATGATCAAGGGCCGGGGTCGTCATGCACGGCCCCA
CCGCAGCAGCAGCAGCAGCAGCAGCAGCGTGCTGAGAGCGGCAGCAGCGG
GCGCTCTAGGTTGGTGCTACTTGCCGTGAAAGAGTGGTTGCGTGGTGTTG
CTGTTGCTGGTGCATCGTTTGTAAGGGGGAGGTTGGTTGCAGCTGTTGTT
TGCAGCGGTTGCAGCTGTTGGTTGCAGTGGTTGTTGTTGTTGTTGTTGTC
GTCGTTGTCGTTTTCGTTGCTCTTGTCAGTGGTGTTAATGGTGGTGGTAT
TGCTGGTCCATAATTTGTAGACGGTGGTTGGTTGTGTTGGTGGTGTTGGT
TTTGCTGGGGCATAACTTGTAGAAAAAGGTTGCAGCTGTTGTTGCTGGTG
CATACCAGGTATTACGTGTGCTTGCTGCTGTTGACAAGAATGCTGGCCGC
TGATCTCACCCCCCCTCCCCCCAAAGAAAGATAAAAATAAACGACATGTA
AAATGTCTCGTATTTTCAGGTCGAGGACAGGCAGGCAGAAGCAGGTGCCG
CGGTGGCTCAAGTGGATCCTTCGGAGGCTCAAGGTCAAGCTCGTCGACGT
CACGCTGCGTTATGAGTCTGTCGGGATGTGCCCGCTGCAGGTGTGTGCGT
GCGTGTGTGTGACCTGTTGACCTACTTTACGCTACTGCTGAATGATACGG
CGGTGGAAGACTTGTACAGCAGTGCTTCAGTACCGCACTGCGTAAGGTGT
CTGTCGGAATGCGCCCTCTGCCCGCGGCGAAAGATGTAACCACCCGCGCG
CGCGCCGCGGGTAGCCCAGTTTGGTTGCTTCGGTACCGGTGGTTGTCTCA
TCTCGCGCTCTTTTTTTGAACTCACGCGTTTGCTGACTCCTCGACCGCCT
ACGTGTTTGTAAGCCCTGTTCTTTATCTCCTCGACCCACGCGTTTGCAAA
CGCTGTTCTATATCTACCCGACCTGCGTGTGTGTAAACTCTGTTCTTTAT
CTTCTCGACCTACGTGTTTGTAAACTCTGTTCTACATCTACTCGGGCCTA
TCATACGTGTTTGTGAACTCTGTTCTATATCTTTTCGACGTACGTGTTTG
ACTGTTCTGTATCCACCGCGGAAGGTGAAAAAATCGTCCCACACACATGC
ACACACACTTACCTACGCGGTTTGGCTACTGGAGGCGTTTTTTCCTTTGA
CTTTTCATATTTCAATTCTACGCCGGAAGATATGGTGGCGCCATTCATCG
CTGGGTAAATCTTTATTGATTTTGGAGACGTGCGTGTGGTTTGCAAGTAT
GATATGCCGGCTGAAAAGTGGCGTTGTTCTGAATTCGTGTTGTCTTTCCT
TCTTTCCAGGTTGTAGATGTTCGTAAACATGGTTTACAGCATGACGCTGA
CGGGTGACACGACGTTTTGAGTTTGGTTTCGTGGACATCTGTGTACTGCA
TATCCGTAAAAAGTATTCAGTGTGACGTGTCACATGAGTACCGAAGGAGA
ATGAGTTTCAATGGACGCTTTTCCTTTTCTTTTTGCCGTGCCGTGTTCAT
GGAAACGACGGAACGCAGGGGGCCCCGGCGGCTGCGATCGAGGTCACTCT
GGGGAGTCTTGAGGTCCAACCGGTGTCCCTTCAGGGGGCATCGGCGTGGT
TTCAGCAGCAGGCACGGGCTCAGCAAAAGAGCCAGCAGCACCAGTACCGC
GAGGTAATCTTGTTGCCTCCGCCGGGTTGAGTTTTCACACTCGCTCGGGG
TTGAGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGCTGTTGTTGTTGTTG
TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGCTGTTGTTGTTGTTGTT
GTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTGGTTGTTGTTGT
GGTTGTGGTTGTGGTTGTGGTTGTTGTTCTTGTTGCTGTTCTTGTTATTT
CTTGTTGTTCTTGCTATTGTTGCTGTTGTTGTTGTTGTTGTTGTTGCTGC
TGCTGCTGCGGCTGTTTGTGTCGGTGGTGGCGGGACGGTGCCGAGAGCAC
TCAAGCTAGCAGCTCTTGTGAGAACAGCGACGTCGGTACACTTCTCCTCA
TGTTAATCTTGTTTTTTTATACGTGTGGTCAATACGTCCAGTAGGTTCGC
AACAGCAAAGCACCACCACCCCCCCTCTCCTCTCTTCCCCTCCAAACAAT
CAGGAACTCCTGCTGCGTGGTCTAGCGGTGAGCGTGGAGCCTCTCGTGGA
CCCACCTTCCCCGCTCCCGCCGCCGGCCGCGGGTGCCACCACCGCCGACA
ACGCCGGCACCAGCAGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig683:1067..4333+

>mRNA_P-littoralis_Contig683.2.2 ID=mRNA_P-littoralis_Contig683.2.2|Name=mRNA_P-littoralis_Contig683.2.2|organism=Pylaiella littoralis U1_48|type=CDS|length=801bp|location=Sequence derived from alignment at P-littoralis_Contig683:1067..4333+ (Pylaiella littoralis U1_48)
GAAGATGGATCGCAGTCCTCGCTCGACTTATCGTTGAGATGGGAGGGTTT
AGTCCTCAAGGACGTGGAGCTGCGGAGGGACTTTATGTCGGAGCTACTCG
GTTTACCGGTGGACGTACCGCACGCCTTCGTGAGGAGGGCGGTGCTGCAC
CTGCCGTGGTACACACTTATGCTCGGGTCCGTCGTGGCCAAGCTGGAGGG
AGTGACTATCGTGATGCGGGGAGACGCGAGCACCGCCAAGGCGGCGGCGG
CTGCGGCGGCAACAGCAGCACCCCGGGACAGCGACGGCGCTGCTGCTCCC
CAGCGGGGCGGTGGGGATGGGAGTGATGGTCACCGTCATGATCAAGGGCC
GGGGTCGTCATGCACGGCCCCACCGCAGCAGCAGCAGCAGCAGCAGCAGC
GTGCTGAGAGCGGCAGCAGCGGGCGCTCTAGGTCGAGGACAGGCAGGCAG
AAGCAGGTGCCGCGGTGGCTCAAGTGGATCCTTCGGAGGCTCAAGGTCAA
GCTCGTCGACGTCACGCTGCGTTATGAGTCTGTCGGGATGTGCCCGCTGC
AGGGGGCCCCGGCGGCTGCGATCGAGGTCACTCTGGGGAGTCTTGAGGTC
CAACCGGTGTCCCTTCAGGGGGCATCGGCGTGGTTTCAGCAGCAGGCACG
GGCTCAGCAAAAGAGCCAGCAGCACCAGTACCGCGAGGAACTCCTGCTGC
GTGGTCTAGCGGTGAGCGTGGAGCCTCTCGTGGACCCACCTTCCCCGCTC
CCGCCGCCGGCCGCGGGTGCCACCACCGCCGACAACGCCGGCACCAGCAG
C
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