mRNA_P-littoralis_Contig683.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig683.1.1
Unique NamemRNA_P-littoralis_Contig683.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig683.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig683contigP-littoralis_Contig683:83..1024 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size318
Hectar predicted targeting categoryother localisation
Exons2
Cds size315
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791420.1758711-CDS-P-littoralis_Contig683:82..3711680791420.1758711-CDS-P-littoralis_Contig683:82..371Pylaiella littoralis U1_48CDSP-littoralis_Contig683 83..371 +
1680791420.1862214-CDS-P-littoralis_Contig683:997..10231680791420.1862214-CDS-P-littoralis_Contig683:997..1023Pylaiella littoralis U1_48CDSP-littoralis_Contig683 998..1023 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig683.1.1prot_P-littoralis_Contig683.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig683 83..1023 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig683.1.1

>prot_P-littoralis_Contig683.1.1 ID=prot_P-littoralis_Contig683.1.1|Name=mRNA_P-littoralis_Contig683.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=105bp
ETLDDSDHSPGRTERPLSSTNSESVAASIAPEDNDNDANFDGSGRSSRSR
RGSGIGRRLRRAGDQGQEIEGGVLEGAPGETDAGEGGEPCRAVVKLGDSY
GSRSG
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mRNA from alignment at P-littoralis_Contig683:83..1024+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig683.1.1 ID=mRNA_P-littoralis_Contig683.1.1|Name=mRNA_P-littoralis_Contig683.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=942bp|location=Sequence derived from alignment at P-littoralis_Contig683:83..1024+ (Pylaiella littoralis U1_48)
GAAACCCTCGACGACTCCGACCACTCGCCAGGACGAACGGAGCGGCCTTT
ATCCTCAACCAACAGCGAAAGCGTCGCCGCTTCTATCGCTCCCGAAGACA
ACGACAACGACGCCAACTTCGACGGTAGCGGCAGAAGCTCCAGGAGCAGA
AGGGGCAGCGGCATCGGCCGCAGGCTCAGGCGAGCGGGTGACCAGGGACA
AGAAATAGAGGGAGGCGTTTTGGAGGGGGCACCGGGAGAGACCGATGCTG
GAGAAGGGGGTGAACCCTGTCGGGCCGTGGTAAAACTAGGTAGGTTGGGT
GGATGGTGGGTGGGTTTTGGTGACGACTTCATAGTCCAGATATGCTGTAT
GGCTGCTGCTGTTCGCGTGCAAGCGTAGTGTATGTACCGTATGTTTGGTC
ACTGCTGAGTGGGTCGGTATAACAACTCTCCCGAAGTGACGTCGTCGACA
AACTTTTTTCAGAATTTTAGAACGGCGGCCGATCTTCGAGGGTGTCGGTA
TCTCCTCATCATATCAAGCAGAGTCTATACATATGATAGCGCTGAAAAAA
GTGGGCGTTGAGAATATCATGTCGAGAAGATCTTTAGAACATCGTGCGAT
GGGTTGGCATTGGCATTGGAACTCTCCACGTTGCGTGCTCGGGGTAACCC
GGCCTTTACAACCGTCCTGGAGGTGGCGTGGTATGCTGCACACGTCGTCC
GTGGCACACATGTGCTTCGGTCGTCTCCACATATGCTCACCAAACACCAC
AAAATTATGCATGCCTGGTACACACTTTTTCCCATCGATACAAATTTGTT
CCGGACACGACAAGTCTGACTGACTGGCATATATATGAACATGGCAGAGC
GTTGTCATTGCTTCCTTTTGCATTACTCCTTAAATATTCTTTCTGATGTG
CTTGATCTGCGGCAGGAGACTCTTATGGCAGCAGGAGTGGCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig683:83..1024+

>mRNA_P-littoralis_Contig683.1.1 ID=mRNA_P-littoralis_Contig683.1.1|Name=mRNA_P-littoralis_Contig683.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=315bp|location=Sequence derived from alignment at P-littoralis_Contig683:83..1024+ (Pylaiella littoralis U1_48)
GAAACCCTCGACGACTCCGACCACTCGCCAGGACGAACGGAGCGGCCTTT
ATCCTCAACCAACAGCGAAAGCGTCGCCGCTTCTATCGCTCCCGAAGACA
ACGACAACGACGCCAACTTCGACGGTAGCGGCAGAAGCTCCAGGAGCAGA
AGGGGCAGCGGCATCGGCCGCAGGCTCAGGCGAGCGGGTGACCAGGGACA
AGAAATAGAGGGAGGCGTTTTGGAGGGGGCACCGGGAGAGACCGATGCTG
GAGAAGGGGGTGAACCCTGTCGGGCCGTGGTAAAACTAGGAGACTCTTAT
GGCAGCAGGAGTGGC
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