mRNA_P-littoralis_Contig682.29.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig682.29.1
Unique NamemRNA_P-littoralis_Contig682.29.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig682.29.1 vs. uniprot
Match: D8LPX3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPX3_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 5.040e-10
Identity = 32/66 (48.48%), Postives = 43/66 (65.15%), Query Frame = 1 
Query:  328 DRMRQSTKPAIQDVKPWIRKSLKLEVDGNGDCYCTSWVLIILLWAVQSEDRLVFLEAKL-DSCYGG 522
            ++M   T+P ++DVKPW   S+ + VD  G+CY +SW LI++LWAVQS  RL  L  KL D C  G
Sbjct:   78 EQMSNYTRPVVEDVKPWCDGSVMVVVDNCGNCYSSSWFLIVILWAVQSPGRLRDLMGKLQDGCLEG 143
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BLAST of mRNA_P-littoralis_Contig682.29.1 vs. uniprot
Match: A0A6H5K680_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K680_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.350e-8
Identity = 30/66 (45.45%), Postives = 42/66 (63.64%), Query Frame = 1 
Query:  328 DRMRQSTKPAIQDVKPWIRKSLKLEVDGNGDCYCTSWVLIILLWAVQSEDRLVFLEAKL-DSCYGG 522
            ++M   T+  ++DVKPW   S+ + VD  G+CY +SW LI++LWAV+S  RL  L  KL D C  G
Sbjct:   88 EQMSNYTRSVVEDVKPWCDGSVMVVVDNCGNCYSSSWFLIVILWAVESPGRLRDLMGKLQDGCLEG 153
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig682.29.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LPX3_ECTSI5.040e-1048.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K680_9PHAE1.350e-845.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig682contigP-littoralis_Contig682:147610..148505 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size537
Hectar predicted targeting categoryother localisation
Exons2
Cds size537
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791420.1174524-CDS-P-littoralis_Contig682:147609..1478431680791420.1174524-CDS-P-littoralis_Contig682:147609..147843Pylaiella littoralis U1_48CDSP-littoralis_Contig682 147610..147843 -
1680791420.1336327-CDS-P-littoralis_Contig682:148202..1485051680791420.1336327-CDS-P-littoralis_Contig682:148202..148505Pylaiella littoralis U1_48CDSP-littoralis_Contig682 148203..148505 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig682.29.1prot_P-littoralis_Contig682.29.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig682 147610..148505 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig682.29.1

>prot_P-littoralis_Contig682.29.1 ID=prot_P-littoralis_Contig682.29.1|Name=mRNA_P-littoralis_Contig682.29.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=179bp
MNGNGASCSRNRLQNVDDRETAAAEAAVKSSVRGGTVKCGGGGKTPAPVA
GKTTGRAQVEVPKSAAIPDRVVAAAGKEAQVATERSERAAGADQSSSKER
KLTMLINDEDRMRQSTKPAIQDVKPWIRKSLKLEVDGNGDCYCTSWVLII
LLWAVQSEDRLVFLEAKLDSCYGGAFRRV
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mRNA from alignment at P-littoralis_Contig682:147610..148505-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig682.29.1 ID=mRNA_P-littoralis_Contig682.29.1|Name=mRNA_P-littoralis_Contig682.29.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=896bp|location=Sequence derived from alignment at P-littoralis_Contig682:147610..148505- (Pylaiella littoralis U1_48)
ATGAACGGCAACGGGGCTTCTTGCTCCCGGAACAGGCTCCAGAATGTTGA
TGACCGTGAGACAGCAGCGGCAGAAGCAGCGGTCAAGAGCTCCGTCAGAG
GCGGTACGGTGAAATGCGGGGGTGGAGGGAAAACACCGGCACCGGTCGCA
GGGAAGACGACGGGAAGGGCGCAAGTGGAGGTCCCGAAGAGTGCTGCAAT
TCCCGACCGAGTCGTAGCCGCGGCGGGAAAGGAGGCCCAAGTAGCGACGG
AAAGGTCCGAGAGAGCAGCAGGGGCTGACCAATCGTCTTCAAAGGAGAGA
AAGGCGAGAGTTGTTACCACGATTAAGAATCGTACGTTGTAGTTTCGTTG
TCGTGTAGGGTGGCCATTTTTGGATCGAAAGTGAAAGAACAATTATTGCC
AGGTGTAGCCTATGTGCGCGCCCTGCAACCGTGCGCCTTTGCGTTATAAA
TTGTTGAGTCTCGAGTCAGTCCACTGGTGGGCGTGTGCATTTGTTCGGAA
TGAAGCCTTCGCTGCATGCAGCTACAAACTATATAAATATATGTAGAATG
TGAAGGCGACGGATGCCACAACATCATGCTGTGCCCCTTCTTTTATATTC
ACTCCGTATGTGTCCGTCGCAAGTTTAAGATGAATGTCGTAAACTGTTTC
TCACCCCGGCAGTTGACGATGTTGATCAATGACGAAGACCGAATGCGGCA
GAGCACAAAGCCTGCAATCCAGGACGTCAAACCGTGGATTCGAAAATCTC
TCAAGCTGGAAGTAGACGGAAACGGGGACTGCTACTGCACTTCGTGGGTG
CTTATCATCCTGCTGTGGGCTGTGCAGAGCGAAGACCGCCTGGTGTTCCT
TGAAGCCAAACTCGACAGCTGCTACGGGGGAGCTTTCCGTCGCGTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig682:147610..148505-

>mRNA_P-littoralis_Contig682.29.1 ID=mRNA_P-littoralis_Contig682.29.1|Name=mRNA_P-littoralis_Contig682.29.1|organism=Pylaiella littoralis U1_48|type=CDS|length=537bp|location=Sequence derived from alignment at P-littoralis_Contig682:147610..148505- (Pylaiella littoralis U1_48)
ATGAACGGCAACGGGGCTTCTTGCTCCCGGAACAGGCTCCAGAATGTTGA
TGACCGTGAGACAGCAGCGGCAGAAGCAGCGGTCAAGAGCTCCGTCAGAG
GCGGTACGGTGAAATGCGGGGGTGGAGGGAAAACACCGGCACCGGTCGCA
GGGAAGACGACGGGAAGGGCGCAAGTGGAGGTCCCGAAGAGTGCTGCAAT
TCCCGACCGAGTCGTAGCCGCGGCGGGAAAGGAGGCCCAAGTAGCGACGG
AAAGGTCCGAGAGAGCAGCAGGGGCTGACCAATCGTCTTCAAAGGAGAGA
AAGTTGACGATGTTGATCAATGACGAAGACCGAATGCGGCAGAGCACAAA
GCCTGCAATCCAGGACGTCAAACCGTGGATTCGAAAATCTCTCAAGCTGG
AAGTAGACGGAAACGGGGACTGCTACTGCACTTCGTGGGTGCTTATCATC
CTGCTGTGGGCTGTGCAGAGCGAAGACCGCCTGGTGTTCCTTGAAGCCAA
ACTCGACAGCTGCTACGGGGGAGCTTTCCGTCGCGTC
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