mRNA_P-littoralis_Contig682.18.5 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig682.18.5 vs. uniprot
Match: A0A6H5JCP1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCP1_9PHAE) HSP 1 Score: 416 bits (1069), Expect = 5.310e-133 Identity = 244/405 (60.25%), Postives = 287/405 (70.86%), Query Frame = 1
Query: 1459 MLKVLLSIRRVHLKLHVGVNIRRKRLAVAKIVWFLTTGNGGAKARPRKVIHAFMYQVRRCQRAAKEWLACRAASVEAVCRLWDRIEKEIRRGLGDELDRAKALWMKNTLRTGADSEMHGKWRELKASTI-----TRSLMARIDRLETQIDRQQKRDKAARVLAARAMLNKRLPVGGVTRGKRRVVQMDSAEDLRTSTVASGKRLAIVHSSLHAKFSLHLQGGSRRIARPGNKVIGEMDARLLVQGEFPVALPDESSEGAGAPT-------VRSTKRARALIYTGDLGRSWQQIVEDTVMQDFRRNAFARKDSMPYLKYSVTLSMDMMAATGNVEGPSVAFAA---------APSVSASTNADGTNGDYNNNGPVALDGLGVVGRSST-LEQSRRLRRDVSAGGAG 2607
M KVLLSIRRVHL+L++G+NIRRK++AV K+ WFL TG+GG KARPRKVI AFMYQVRRCQRAA+EWLACRAA++EAVCRLWDRIE EIRRGLGDELDRAK +W+KN LRTG DS +HG+WRELKAS T D D Q+ +A R + A A G + MDSAE+LRTSTV+S KRLA++ SSL+AKFSLH QGG RR+ R GN+VIGEMDAR++++GEFP A P + SEGA A T VRSTKR+RALIYTGDLGRSWQQIVEDTVMQDFRRNAFARKDSMPYL+YSV LS+DMMAATGN +GPS + A P+ A+T N +G AL + +S+ LEQ RR R+ SAGG G
Sbjct: 1 MFKVLLSIRRVHLRLYMGMNIRRKQMAVTKMQWFLATGSGGPKARPRKVIRAFMYQVRRCQRAAREWLACRAATIEAVCRLWDRIESEIRRGLGDELDRAKRVWVKNALRTGEDSHIHGQWRELKASEDQEPGGTNRSPRGADGAPA--DAGQEGPRAGREVDAEASER-----GNPGPQEGHAGLMDSAENLRTSTVSSSKRLAMIRSSLNAKFSLHQQGG-RRVERTGNRVIGEMDARMVIRGEFPDAPPGDGSEGAAARTSSAALTVVRSTKRSRALIYTGDLGRSWQQIVEDTVMQDFRRNAFARKDSMPYLQYSVVLSLDMMAATGNTDGPSASAMAXXXXXXXXXVPTGDATT--------ANGSGRDALRRASIGSTASSGLEQRRRRGREGSAGGGG 389
BLAST of mRNA_P-littoralis_Contig682.18.5 vs. uniprot
Match: D8LJ78_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ78_ECTSI) HSP 1 Score: 334 bits (856), Expect = 5.550e-101 Identity = 234/467 (50.11%), Postives = 288/467 (61.67%), Query Frame = 1
Query: 187 DANANRGMDEVPPTTKKAAQKLTNFRAYLQKSSVAGCFVDLLEMTSEGVMTEAGLYPSSRYKESRDMRQAGLGRRSRVRHPVGISGGLHNNNHAPDNPXXXXXXXXXXXXXXXXXXXXXXPXXHRVPXXXXXXXXGRRRQRPSTAVGTPNPPMLAH-TPDAPLTSRVA-DPGRCLAGAGTGVIAFSTSRSAKSGGGDEGGSSSRVSTLDIKRTKWLRGDAKVEEGGWLEAGITGQPQLEEATAGGA-----PETSGDTQG---EGRNGG-NDWSGNRDVDAADGAAQRWSGNTASAGRVLPPSVPRVAWGNAMRELTTTVTKVTQMKVAAARAVTHSADERRLRAAKARAVLIEGEKLRAQELLSKNENRKQMAIEAAALAASQRGLLGVITLVLATKRLWAEGLKLSQQHERDAEVAVAAKVVQRAFKAYTSRRMLKVLLSIRRVHLKLHVGVNIRRKRLAVAKIV 1554
+A A ++V P TKKAAQKLTNFR YL KSSVAGCFVDLL+MT EGVMTEAGLYPSSRYK+SR+MRQ+GLG SR R P G++G N N P R P G +RPSTA+ T + P+ A T DAPL++RV G A A I ++S S + E + SR + LDI+RT+W+ G +K GGWLEA GQ Q + GA PET+ D + EGRNGG +D +G D G S + S P RVAWG AMREL+++VTKV MK AA RA+ +S+ +RR RAA RA LIEGE LRAQ L+KNENRK+ A EAAALAASQRGLL I+LV+ATKRLWA LKLSQ E + +AA VVQRA+KAYT+RRM KVLL+IRRVHL+L++G+NIRRK++ + +V
Sbjct: 2 EAGACSNPEDVQPATKKAAQKLTNFRGYLHKSSVAGCFVDLLQMTDEGVMTEAGLYPSSRYKQSRNMRQSGLGTSSRSRPPTGLNGP--NKNDKSQAPLQGPSNNQAEDQRKN----------QRQPR-------GHHGRRPSTALETHSAPLAAQLTRDAPLSARVGLSAGNSFAEAAGSRILSASSPSCHNNNKSEDIAGSRATILDIRRTQWVEGGSKQGVGGWLEADTAGQSQQHQGQLVGAVSATGPETNDDAEEGEKEGRNGGGHDENGG---DHPGGRCNTSSTTSTSTADSPKPFSRRVAWGKAMRELSSSVTKVAHMKTAADRAMINSSHDRRARAASVRAGLIEGELLRAQAALAKNENRKRRATEAAALAASQRGLLEAISLVVATKRLWAGSLKLSQDREHLVHLGIAATVVQRAYKAYTNRRMFKVLLAIRRVHLRLYIGMNIRRKQMVRSAVV 446
BLAST of mRNA_P-littoralis_Contig682.18.5 vs. uniprot
Match: D8LJ77_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ77_ECTSI) HSP 1 Score: 278 bits (710), Expect = 6.440e-83 Identity = 151/210 (71.90%), Postives = 173/210 (82.38%), Query Frame = 1
Query: 1678 SVEAVCRLWDRIEKEIRRGLGDELDRAKALWMKNTLRTGADSEMHGKWRELKASTITRSLMARIDRLETQIDRQQKRDKAARVLAARAMLNKRLPVGGVTRGKRRVVQMDSAEDLRTSTVASGKRLAIVHSSLHAKFSLHLQGGSRRIARPGNKVIGEMDARLLVQGEFPVALPDESSEGAGAPT-------VRSTKRARALIYTGDLGR 2286
S+EAVCRLWDRIE EIRRGLGDELDRAK +WMKN LRTG DS +HG+WRELKA T RSL+ARIDRLE Q++RQQ RDK ARV AAR+ML +R GVTRG R+V QMDSAE+LRTSTV+S KRLAI+ SSL+AKFSLH QGG RR+ R GN+VIGEMDAR++++GEFP A PD+ SEGA A T VRSTKR+RALIYTGDLGR
Sbjct: 34 SIEAVCRLWDRIESEIRRGLGDELDRAKRVWMKNALRTGEDSHIHGQWRELKAKT--RSLVARIDRLEAQMERQQTRDKKARVQAARSMLKRR---SGVTRGHRKVTQMDSAENLRTSTVSSSKRLAIIRSSLNAKFSLHQQGG-RRVERTGNRVIGEMDARMVIRGEFPDAPPDDGSEGAAAGTSSAAISVVRSTKRSRALIYTGDLGR 237
BLAST of mRNA_P-littoralis_Contig682.18.5 vs. uniprot
Match: A0A6H5JK95_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK95_9PHAE) HSP 1 Score: 237 bits (604), Expect = 1.670e-61 Identity = 196/433 (45.27%), Postives = 239/433 (55.20%), Query Frame = 1
Query: 187 DANANRGMDEVPPTTKKAAQKLTNFRAYLQKSSVAGCFVDLLEMTSEGVMTEAGLYPSSRYKESRDMRQAGLGR--RSRVRHPVGISGGLHNN-NHAPDNPXXXXXXXXXXXXXXXXXXXXXXPXXHRV--PXXXXXXXXGRRRQRPSTAVGTPNPPMLAH-TPDAPLTSRVA-DPGRCLAGAGTGVIAFSTSRSAKSGGGDEGGSSSRVSTLDIKRTKWLRGDAKVEEGGWLEAGITGQPQLEEATAGGA-----PETS-GDTQG--EGRNGGNDWSGNRDVDAADGAAQRWSGNTASAGRVLPPSVPRVAWGNAMRELTTTVTKVTQMKVAAARAVTHSADERRLRAAKARAVLIEGEKLRAQELLSKNENRKQMAIEAAALAASQRGLLGVITLVLATKRLWAEGLKLSQQHERDAEVAVAAKVVQRAFK 1440
+A A ++V P TKKAAQKL NFR GC T+ GVMTEAGLYPSSRYK+SR+MRQ+GLG RSR R P ++G N+ + AP P ++V G +RPSTA+ TP+ P+ A T DAPL++RV G A A G S E + SR + LDI+RT+W+ G++K GGWLEA G+ Q + GA PET+ G +G EGRNG G + S + S P RVAWG AMREL+++VTKV MK AA RA+ +S+ ERR RAA RA LIEGE LRAQE L+KNENRK+ A EAAALAASQRGLL ITLV+ATKRLWA LKLSQ E A + VAA VVQRA+K
Sbjct: 8 EAGACSNPEDVQPATKKAAQKLANFR---------GC-----SSTASGVMTEAGLYPSSRYKQSRNMRQSGLGSSSRSRSRPPTRLNGRRKNDKSQAP----------------------LQGPSNNQVGDQSKNQRQQRGHHGRRPSTALETPSAPLAAQPTRDAPLSARVGLSAGNSFAEA-AGARTLGASSPTCDNNKSEDIAGSRATILDIRRTQWVEGESKQGVGGWLEADTAGRSQQHQGQRVGAVSATGPETNDGAEEGDKEGRNGXXXXX--XXXXXXXGRCKTSSTTSTSTADSPKPFSRRVAWGKAMRELSSSVTKVAHMKTAADRAMINSSHERRARAASVRAGLIEGELLRAQEALAKNENRKRQATEAAALAASQRGLLEAITLVVATKRLWASSLKLSQDREDLAHLGVAATVVQRAYK 401 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig682.18.5 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig682.18.5 >prot_P-littoralis_Contig682.18.5 ID=prot_P-littoralis_Contig682.18.5|Name=mRNA_P-littoralis_Contig682.18.5|organism=Pylaiella littoralis U1_48|type=polypeptide|length=837bp MSGAGRSPRVQQTMLRIKADANANRGMDEVPPTTKKAAQKLTNFRAYLQKback to top mRNA from alignment at P-littoralis_Contig682:84132..96311- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig682.18.5 ID=mRNA_P-littoralis_Contig682.18.5|Name=mRNA_P-littoralis_Contig682.18.5|organism=Pylaiella littoralis U1_48|type=mRNA|length=12180bp|location=Sequence derived from alignment at P-littoralis_Contig682:84132..96311- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig682:84132..96311- >mRNA_P-littoralis_Contig682.18.5 ID=mRNA_P-littoralis_Contig682.18.5|Name=mRNA_P-littoralis_Contig682.18.5|organism=Pylaiella littoralis U1_48|type=CDS|length=2511bp|location=Sequence derived from alignment at P-littoralis_Contig682:84132..96311- (Pylaiella littoralis U1_48)back to top |