mRNA_P-littoralis_Contig117.147.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig117.147.1
Unique NamemRNA_P-littoralis_Contig117.147.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig117.147.1 vs. uniprot
Match: A0A6H5K7B4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7B4_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 2.100e-11
Identity = 36/62 (58.06%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:   46 NLGESNTSTGGGEMASASCDSTRAEESVEEGREHDDFLSRQIVRDLSLSILDGAGASTGGDS 231
            N GE NT TG GEMASA  D T  E   ++G +HDDFLSR I  D+SLS L+GAG S+G  S
Sbjct:  160 NAGEGNTLTGSGEMASAGGDLTTEEVPTQDGMDHDDFLSRPIAMDISLSALEGAGVSSGSGS 221
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig117.147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K7B4_9PHAE2.100e-1158.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig117contigP-littoralis_Contig117:528777..529010 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size234
Hectar predicted targeting categoryother localisation
Exons1
Cds size234
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789490.282884-CDS-P-littoralis_Contig117:528776..5290101680789490.282884-CDS-P-littoralis_Contig117:528776..529010Pylaiella littoralis U1_48CDSP-littoralis_Contig117 528777..529010 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig117.147.1prot_P-littoralis_Contig117.147.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig117 528777..529010 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig117.147.1

>prot_P-littoralis_Contig117.147.1 ID=prot_P-littoralis_Contig117.147.1|Name=mRNA_P-littoralis_Contig117.147.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=78bp
DIGLAGGRGGGRGGENLGESNTSTGGGEMASASCDSTRAEESVEEGREHD
DFLSRQIVRDLSLSILDGAGASTGGDS*
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mRNA from alignment at P-littoralis_Contig117:528777..529010+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig117.147.1 ID=mRNA_P-littoralis_Contig117.147.1|Name=mRNA_P-littoralis_Contig117.147.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=234bp|location=Sequence derived from alignment at P-littoralis_Contig117:528777..529010+ (Pylaiella littoralis U1_48)
GACATCGGGCTAGCAGGGGGTCGTGGCGGGGGGCGTGGTGGTGAGAACCT
GGGTGAGAGCAACACCTCGACAGGTGGTGGTGAGATGGCCTCTGCCAGTT
GTGATTCGACGAGGGCGGAAGAATCTGTGGAGGAGGGGAGGGAACACGAC
GATTTTCTATCCCGACAGATTGTAAGGGATTTGTCGCTGTCGATTTTGGA
CGGGGCGGGTGCGTCTACCGGGGGTGATTCGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig117:528777..529010+

>mRNA_P-littoralis_Contig117.147.1 ID=mRNA_P-littoralis_Contig117.147.1|Name=mRNA_P-littoralis_Contig117.147.1|organism=Pylaiella littoralis U1_48|type=CDS|length=234bp|location=Sequence derived from alignment at P-littoralis_Contig117:528777..529010+ (Pylaiella littoralis U1_48)
GACATCGGGCTAGCAGGGGGTCGTGGCGGGGGGCGTGGTGGTGAGAACCT
GGGTGAGAGCAACACCTCGACAGGTGGTGGTGAGATGGCCTCTGCCAGTT
GTGATTCGACGAGGGCGGAAGAATCTGTGGAGGAGGGGAGGGAACACGAC
GATTTTCTATCCCGACAGATTGTAAGGGATTTGTCGCTGTCGATTTTGGA
CGGGGCGGGTGCGTCTACCGGGGGTGATTCGTGA
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