mRNA_P-littoralis_Contig682.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig682.4.1
Unique NamemRNA_P-littoralis_Contig682.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig682.4.1 vs. uniprot
Match: A0A6H5JCW2_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCW2_9PHAE)

HSP 1 Score: 293 bits (750), Expect = 7.790e-91
Identity = 171/275 (62.18%), Postives = 189/275 (68.73%), Query Frame = 1 
Query:  214 PAVDILPAKAPLPLLDDGITVVSFNVLLPNGNDGWWMYKSYQPHVPEEHRVWPFRKALMRDYLLSKDADVVCVQEASAETFESDFDFMKDAGYDCVLHSKFRFRSATFFKTSRLELACEKHKDRVLVTGLRTLAKKATAVTATRGPPSETAPXXXXXXTETSVAAAGTAGTAATIEKEAST-LERSAPGGNVSTDADGPVAATATGAGAREHKGGGGKADEAGVSSGQNGRLVMVVNCHLTGGAAPERRMRQVLDGLDAARKEAARVLSAQAAAA 1035
            PAV ILPAKAPLPLLDDG+TVVSFNVLLPNGNDGWWMYKSYQPHVPEEHRVWPFRKALMR+YLLSKDAD+VCVQEASAETFE+DFDFMKDAGYD VLH+KFRFRSATFFKTSRLELA EKHKDRVLVTGLRTL    +  ++         P      TE    +         ++  + T  + S  GG+                                 S    GRLVMVVNCHLTGG APERRMRQVLDGLDAARK+A ++LS +A AA
Sbjct:   10 PAVAILPAKAPLPLLDDGLTVVSFNVLLPNGNDGWWMYKSYQPHVPEEHRVWPFRKALMREYLLSKDADIVCVQEASAETFETDFDFMKDAGYDHVLHTKFRFRSATFFKTSRLELASEKHKDRVLVTGLRTLPPATSVPSSQAXXXXXXXPPPGNERTEVQEPSED-------VDPSSKTDAQPSNRGGSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSRSGKGRLVMVVNCHLTGGPAPERRMRQVLDGLDAARKDAVKLLSEEAEAA 277
[Close]
BLAST of mRNA_P-littoralis_Contig682.4.1 vs. uniprot
Match: D8LJ74_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ74_ECTSI)

HSP 1 Score: 187 bits (474), Expect = 8.020e-56
Identity = 86/92 (93.48%), Postives = 90/92 (97.83%), Query Frame = 1 
Query:  217 AVDILPAKAPLPLLDDGITVVSFNVLLPNGNDGWWMYKSYQPHVPEEHRVWPFRKALMRDYLLSKDADVVCVQEASAETFESDFDFMKDAGY 492
            AV ILPAK PLPLLDDG+TVVSFNVLLPNGNDGWWMYKSYQPHVPEEHRVWPFRKALMR+YLLSKDAD+VCVQEASAETFE+DFDFMKDAGY
Sbjct:   11 AVAILPAKTPLPLLDDGLTVVSFNVLLPNGNDGWWMYKSYQPHVPEEHRVWPFRKALMREYLLSKDADIVCVQEASAETFETDFDFMKDAGY 102
[Close]
BLAST of mRNA_P-littoralis_Contig682.4.1 vs. uniprot
Match: A0A7S1EDE4_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1EDE4_HEMAN)

HSP 1 Score: 147 bits (372), Expect = 2.110e-36
Identity = 73/128 (57.03%), Postives = 91/128 (71.09%), Query Frame = 1 
Query:  226 ILPAKAPLPLLD-DGITVVSFNVLLPNGNDGWWMYKSYQPHVPEEHRVWPFRKALMRDYLLSKDADVVCVQEASAETFESDFDFMKDAGYDCVLHSKFRFRSATFFKTSRLELACEKHKDRVLVTGLR 606
            I+  + PLP L  +G ++ SFNVLLPN  DGWW+YK + P V  EHR WP R+ LM + +LS  AD+V +QEA+AE+FE DF FM DAGY  VLHSK RFR+ATFFKT R EL  +  +DR LVT L+
Sbjct:   74 IISPQEPLPQLGAEGFSLASFNVLLPNSKDGWWIYKYFGPSVSAEHREWPHRQKLMSEIMLSAKADIVAIQEAAAESFEEDFAFMSDAGYSHVLHSKLRFRTATFFKTDRFELLSQFPRDRGLVTALK 201
[Close]
BLAST of mRNA_P-littoralis_Contig682.4.1 vs. uniprot
Match: A0A7S1UNX6_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UNX6_9STRA)

HSP 1 Score: 144 bits (364), Expect = 1.860e-34
Identity = 93/269 (34.57%), Postives = 119/269 (44.24%), Query Frame = 1 
Query:  211 TPAVDILPAKAPLPLL-------DDGITVVSFNVLLPNGNDGWWMYKSYQPHVPEEHRVWPFRKALMRDYLLSKDADVVCVQEASAETFESDFDFMKDAGYDCVLHSKFRFRSATFFKTSRLELACEKHKDRVLVTGLRTLAKKATAVTATRGPPSETAPXXXXXXTETSVAAAGTAGTAATIEKEASTLERSAPGGNVSTDADGPVAATATGAGAREHKGGGGKADEAGVSSGQNGRLVMVVNCHLTGGAAPERRMRQVLDGLDAARK 996
            T +V ILPA+ PLP          D  +++S+NVLLPN  D WW +K Y   V  E R WP R  L+R+ LL   AD+VC+QEA  +TFE DF FM DAGYD VLH KFRFR ATFF+ +R  +    HKDR LVT LR   ++                                                                                           + R++ +VNCHL+GGAAPERR+RQ+ +GL+  RK
Sbjct:   63 TTSVPILPARQPLPSFFSVDDNDKDQFSLLSWNVLLPNSQDNWWCHKQYASWVDVEKRQWPHRHGLIRERLLESKADIVCIQEADGDTFEDDFAFMSDAGYDHVLHRKFRFRCATFFQRNRFAIEEIAHKDRTLVTSLRYTTQQ------------------------------------------------------------------------------------------NSSRMLSLVNCHLSGGAAPERRLRQIHEGLEQIRK 241
[Close]
BLAST of mRNA_P-littoralis_Contig682.4.1 vs. uniprot
Match: A0A7S4HMQ6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HMQ6_9STRA)

HSP 1 Score: 135 bits (340), Expect = 2.040e-31
Identity = 94/273 (34.43%), Postives = 117/273 (42.86%), Query Frame = 1 
Query:  226 ILPAKAPL--PLLDDG---------ITVVSFNVLLPNGNDGWWMYKSYQPHVPEEHRVWPFRKALMRDYLLSKDADVVCVQEASAETFESDFDFMKDAGYDCVLHSKFRFRSATFFKTSRLELACEKHKDRVLVTGLRTLAKKATAVTATRGPPSETAPXXXXXXTETSVAAAGTAGTAATIEKEASTLERSAPGGNVSTDADGPVAATATGAGAREHKGGGGKADEAGVSSGQNGRLVMVVNCHLTGGAAPERRMRQVLDGLDAARKEAARV 1011
            ILPA+ PL     DD           +V+S+N+LLPN  D WW +K + P VP E R W  R+AL+RD LL   AD+VC+QEA  ETFE DF FM++AGY+  LH KFRFR ATFF+  +  L    HKDR LVT LR++                                                                                                R + VVNCHL+GGA PERR+RQV + LD  RK  A+V
Sbjct:   83 ILPARQPLHSAFADDSSGGMPCKQDFSVLSWNILLPNSQDNWWCHKMFAPWVPMEKREWLHRQALIRDRLLLAGADIVCIQEADGETFERDFAFMEEAGYEHCLHRKFRFRCATFFRKDKFALEQVAHKDRTLVTELRSI---------------------------------------------------------------------------------------------DGSRALNVVNCHLSGGAVPERRLRQVHEALDQIRKWKAKV 262
[Close]
BLAST of mRNA_P-littoralis_Contig682.4.1 vs. uniprot
Match: A0A7S3UUW7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UUW7_HETAK)

HSP 1 Score: 122 bits (307), Expect = 5.480e-31
Identity = 52/100 (52.00%), Postives = 73/100 (73.00%), Query Frame = 1 
Query:  265 GITVVSFNVLLPNGNDGWWMYKSYQPHVPEEHRVWPFRKALMRDYLLSKDADVVCVQEASAETFESDFDFMKDAGYDCVLHSKF----RFRSATFFKTSR 552
            G +V+S+NVLLPN +DGWW+YK+YQ HVP +HR W  R +L+   ++  +AD++C+QEAS ++FE DFDFM+ AGY  V+H+K     R R ATFF+  R
Sbjct:    1 GFSVMSYNVLLPNSHDGWWIYKNYQKHVPRQHRAWGHRSSLLEKQIVGSNADIICIQEASGDSFEEDFDFMEKAGYGSVVHAKGVNKGRMRMATFFRAGR 100
[Close]
BLAST of mRNA_P-littoralis_Contig682.4.1 vs. uniprot
Match: A0A7S2V1N9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1N9_9STRA)

HSP 1 Score: 133 bits (334), Expect = 8.550e-31
Identity = 61/121 (50.41%), Postives = 87/121 (71.90%), Query Frame = 1 
Query:  232 PAKAPLPLLDDGITVVSFNVLLPNGNDGWWMYKSYQPHVPEEHRVWPFRKALMRDYLLSKDADVVCVQEASAETFESDFDFMKDAGYDCVLHSKFRFRSATFFKTSRLELACEKHKDRVLV 594
            P  APL   +  ++V+S+NVLLPN  DGWW+YK Y+ HVPEEHR W +R+ L++  LL  +ADV+C+QE S ++FESDF F+++AGY+ + H+K R R ATF++  +LE     H DRVL+
Sbjct:  107 PPTAPLDC-ERTLSVLSYNVLLPNSADGWWIYKYYKHHVPEEHRTWEYRQQLLKVQLLGSEADVICLQETSPKSFESDFAFLREAGYESIQHNKGRLRCATFWRADKLEQVLCTHSDRVLL 226
[Close]
BLAST of mRNA_P-littoralis_Contig682.4.1 vs. uniprot
Match: R1BIY3_EMIHU (EF-hand domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BIY3_EMIHU)

HSP 1 Score: 132 bits (332), Expect = 1.700e-30
Identity = 60/108 (55.56%), Postives = 78/108 (72.22%), Query Frame = 1 
Query:  271 TVVSFNVLLPNGNDGWWMYKSYQPHVPEEHRVWPFRKALMRDYLLSKDADVVCVQEASAETFESDFDFMKDAGYDCVLHSKFRFRSATFFKTSRLELACEKHKDRVLV 594
            +++S+N+LLPNG D WW  K YQPHVP + R W  R+ L+RD LL  DAD+VCVQEA+ +TF SDF+F+   GY+ VLH KFRFR ATF++ S  +L    H+DR LV
Sbjct:   45 SLLSWNILLPNGEDNWWCEKMYQPHVPHDCRQWSHRQRLIRDRLLLADADIVCVQEAAGDTFASDFEFLHADGYESVLHKKFRFRCATFYRPSAFKLLSVAHEDRALV 152
[Close]
BLAST of mRNA_P-littoralis_Contig682.4.1 vs. uniprot
Match: A0A7S3QA10_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QA10_9STRA)

HSP 1 Score: 126 bits (316), Expect = 4.140e-28
Identity = 91/274 (33.21%), Postives = 119/274 (43.43%), Query Frame = 1 
Query:  220 VDILPAKAPLPLL----DDGITVVSFNVLLPNGNDGWWMYKSYQPHV-----------PEEHRVWPFRKALMRDYLLSKDADVVCVQEASAETFESDFDFMKDAGYDCVLHSKFRFRSATFFKTSRLELACEKHKDRVLVTGLRTLAKKATAVTATRGPPSETAPXXXXXXTETSVAAAGTAGTAATIEKEASTLERSAPGGNVSTDADGPVAATATGAGAREHKGGGGKADEAGVSSGQNGRLVMVVNCHLTGGAAPERRMRQVLDGLDAARK 996
            V ILPA+ PLP      D+  +++S+N+LLPN  D WW +K Y  H             + H  W  R++L+++ +L    DV C+QEA  +TF++DF+FMKDAGYD VLH KFRFR ATFF   +  L    HKDR LVT LR      T  T+T+                                                                                     R++ VVNCHL+GGAAPERR+RQV D +D  RK
Sbjct:   74 VPILPARQPLPSFFGEHDECFSLLSWNILLPNSIDNWWCHKQYA-HAGGIGIDIXXXNDKAHTQWKHRQSLIKERVLHSAPDVFCMQEADGDTFDADFEFMKDAGYDHVLHKKFRFRCATFFLKDKFLLEQVAHKDRTLVTSLRC----RTTPTSTQ-------------------------------------------------------------------------------------RILHVVNCHLSGGAAPERRLRQVHDAVDQIRK 257
[Close]
BLAST of mRNA_P-littoralis_Contig682.4.1 vs. uniprot
Match: A0A813KIP1_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813KIP1_POLGL)

HSP 1 Score: 122 bits (307), Expect = 4.270e-27
Identity = 64/128 (50.00%), Postives = 82/128 (64.06%), Query Frame = 1 
Query:  226 ILPAKAPLPLLDDGITVVSFNVLLPNGNDGWWMYKSYQPHVPEEHRVWPFRKALMRDYLLSKDADVVCVQEASAETFESDFDFMKDAGYDCVLHSKF-RFRSATFFKTSRLELACEKHKDRVLVTGLR 606
            +LPA +PLP    G + +S+NVLLPN  DGWW+YK Y+   P +   WP R+AL+R  LL   AD +C+QE S  TF  DF F+ +AGYD  LH+K  R R ATF+   R E    +HKDR L+TGLR
Sbjct:  187 VLPAGSPLPR--GGFSCLSYNVLLPNSGDGWWIYKYYRD--PGDEASWPARQALLRAQLLGAAADAICLQECSEATFAEDFKFLTEAGYDVHLHNKTGRMRPATFWLGERFECVAAQHKDRTLITGLR 310
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig682.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCW2_9PHAE7.790e-9162.18Endo/exonuclease/phosphatase domain-containing pro... [more]
D8LJ74_ECTSI8.020e-5693.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1EDE4_HEMAN2.110e-3657.03Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A7S1UNX6_9STRA1.860e-3434.57Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S4HMQ6_9STRA2.040e-3134.43Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A7S3UUW7_HETAK5.480e-3152.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2V1N9_9STRA8.550e-3150.41Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
R1BIY3_EMIHU1.700e-3055.56EF-hand domain-containing protein n=1 Tax=Emiliani... [more]
A0A7S3QA10_9STRA4.140e-2833.21Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A813KIP1_POLGL4.270e-2750.00Hypothetical protein n=2 Tax=Polarella glacialis T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig682contigP-littoralis_Contig682:39352..43285 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2903.EOD09813
PFAMsExo_endo_phos
Model size1097
Max annot lvl2759|Eukaryota
KEGG koko:K18729
Hectar predicted targeting categorysignal peptide
Exons3
Evalue2.44e-31
EggNOG OGsCOG5239@1|root,KOG2338@2759|Eukaryota
DescriptionAngel homolog
Cds size1077
COG categoryA
BRITEko00000,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791419.1593993-CDS-P-littoralis_Contig682:39351..399581680791419.1593993-CDS-P-littoralis_Contig682:39351..39958Pylaiella littoralis U1_48CDSP-littoralis_Contig682 39352..39958 -
1680791419.173835-CDS-P-littoralis_Contig682:40576..407341680791419.173835-CDS-P-littoralis_Contig682:40576..40734Pylaiella littoralis U1_48CDSP-littoralis_Contig682 40577..40734 -
1680791419.1851008-CDS-P-littoralis_Contig682:42955..432671680791419.1851008-CDS-P-littoralis_Contig682:42955..43267Pylaiella littoralis U1_48CDSP-littoralis_Contig682 42956..43267 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791419.1992357-UTR-P-littoralis_Contig682:43267..432851680791419.1992357-UTR-P-littoralis_Contig682:43267..43285Pylaiella littoralis U1_48UTRP-littoralis_Contig682 43268..43285 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig682.4.1prot_P-littoralis_Contig682.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig682 39352..43267 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig682.4.1

>prot_P-littoralis_Contig682.4.1 ID=prot_P-littoralis_Contig682.4.1|Name=mRNA_P-littoralis_Contig682.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=359bp
MWSGACFARATATLFFLLVHLHIIAGFGLPVAHCSPASGSAAAKTSIRSA
AAAAAASMSTSTTATPAVDILPAKAPLPLLDDGITVVSFNVLLPNGNDGW
WMYKSYQPHVPEEHRVWPFRKALMRDYLLSKDADVVCVQEASAETFESDF
DFMKDAGYDCVLHSKFRFRSATFFKTSRLELACEKHKDRVLVTGLRTLAK
KATAVTATRGPPSETAPPPPPPATETSVAAAGTAGTAATIEKEASTLERS
APGGNVSTDADGPVAATATGAGAREHKGGGGKADEAGVSSGQNGRLVMVV
NCHLTGGAAPERRMRQVLDGLDAARKEAARVLSAQAAAAMPATPSNKSKG
QSNGKKGGG
back to top

mRNA from alignment at P-littoralis_Contig682:39352..43285-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig682.4.1 ID=mRNA_P-littoralis_Contig682.4.1|Name=mRNA_P-littoralis_Contig682.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3934bp|location=Sequence derived from alignment at P-littoralis_Contig682:39352..43285- (Pylaiella littoralis U1_48)
GAGAGAACGTTGCCGCGGATGTGGTCTGGTGCATGCTTCGCGCGTGCAAC
TGCCACGCTTTTCTTCCTCCTGGTACACCTGCACATTATTGCTGGCTTTG
GCCTGCCGGTGGCACATTGTAGCCCAGCTTCTGGTAGCGCTGCAGCGAAG
ACAAGCATCAGGTCTGCTGCTGCTGCTGCTGCTGCTTCGATGTCGACATC
AACAACAGCAACACCAGCAGTGGATATCCTGCCTGCGAAGGCTCCGCTGC
CGCTGCTAGACGATGGCATCACGGTGGTGTCTTTCAATGTACTACTTCCA
AACGGGAACGATGGCTGGTGGATGTACAAGGTACGTGCGCGCAAGGGAGA
GGGGCAGGGAGAAAGAGGCATATGCAAGCTATAACAGCGGTTGAGAATGT
AAACGCGGCGCAACTTGTATTTGGGCCTGTATCGTATGCAGCCTTCAGCC
GTGTCTCCGATAATCACCATCATATCGCACATCTACTAGTGTTCCTTATC
ATATCATAACTCATCAGAATTTGAATGTGTTCCGGTCAATGAACGACATT
GCACTGCTCTAGCAGCCCCTTTGAATAAATATTCGAACTACAAGTACTTC
GTATAAATCGGCATCAGAGAATTCGTCTTTCCACACTAGGAATTATGCTC
CATTTGTTGATTGTTGTTCTTCATTCTCACATAGCTCACTGCCGCCGCAG
TCTAGCCCGTGGTCGCAAACCAGCAGGCACATATCGTGATAGGAGGAAAA
TAAAAAAAAATAAAAAAATGGACTACGTATGATCACCCACAGTCATCAGA
CAGGGCACCGTTGGTGGCCAAAGTACAAAACAAACTACAGAAAAAAATAC
AGAAAACGACAGGTTTGAAAGAAAAAACAAAAATTGGAAACAGTCGACAA
ACAAAAAATAACCAAGACAAACCTCAACCATAAACTTCGAAGTACTTCGT
ATATAACCGAACCAGAGCCCACGGGGCCATGACAAACCAAGGCAAAGACA
AACCAGGGCGCGCATGGTCCAGTCAATACATGATCAAAAGACGAAAGACA
AATGAATAAAAGAAGACATACTTCGTACCATATAGCTAAGACACAAAGAC
TGGGAGTGTTGTTGTATGTTACGTCGACGTAATTCGTTTTCGAACACCTC
GTCAAGTACATTAGAATTGGTCCCAAGGAGGATAATTTACCCACGAATTA
TTTGTTTCCAGTTCCATACTGTAAACTGATGTGGTTTGACCACAAGGGCC
GGGAAAGTTTTTTAAGAAAGGGCGGCGTTGTACTTCATCCAAAGGTTAAG
GACCACGAGGTGCTTCTCCACACCGAAATGCGTTTTATCACGCGGTTTTC
TCGAGTTTAGCCAATGAAATTTTGCACACGTATTCTCTGGGACACTGCAC
AACCCCTGATAGTTTCTTTATTTTTATTGTTGTGTTTGTTCACCAGACGT
CTGGGGTCCGAGCCAACCTAAGCAGTCCCAAATGACTTTCATTCTGAAAT
ATTTGATACTTCAATATCTGTACTGAAATACTTCGAAGTATTTGATACTG
AAATATCTGTGAATACTACCATACGATTCCCGTGGATAGTGACATCATCT
GGTGGGACCCGTATGGAATACCCATGAGGAGAAATTCCCATGATATGAGA
ACTTCAAGGAGCAGTCCCGGGTCGGACATTCCCCTCGCGTGCAGTTACAG
ATTGCCCGGGGAGTTCCCCCGTGCGTTGCTGTTGCCTTTCCCCGACTCGT
GCTCGTGCCTCCCTCTCGTCGTGAGAGGTGAGACCCCGCGTGCACTCCAC
GCAACACACCTACCGAGGAGAACCGCCTGTAGCGCAGAACCTGGAACACC
CCCGTTCCATCATACTGGCGATCAACGGCGGTTGATCTACTTACAGTATT
CAAGGCGCATTGGGCAGTCTGTTTGTCGTTTGAAGTGTGGTTGGCTCTCC
TCCCAGACAGATAGCTCACGCTTTGTGAGCCTGAATTCACACCCACCTGA
GGTGGATGAGGATGAGGAGTTTGACCACCGTGTCAACATCTAAGCTACTT
GGGTCCTTCAAGGCGCCCCGCCCCCGCTTTCATCGTCGGTTGCGTATGGT
GATCAAGTAGACCATCCCACTGCTGCTGCTGCTGCTGGCTGATGCAGCTG
CTGCTGGCTCCATCACGCGGCTTAACGTACGAAAATCGTAAGTGGCGCGT
TGGCCCATGTCATATGCAAATTTTCAGGGCCTCGATCTACGAAACCGCGT
GAGAAAGTGCATTTGAATCCATTTCGTCCGTTCACCGTGAACCAGTCTGT
ACAGCACGAGCATCTCCTGAGGAGATACCTGCCAGATTCGAAATACAGCA
GTCGGCACGGAAGCACAACGTTTCAACCGCATTTGTGCGAGACTCTACTC
TACTGCCACAGGCTTTCAGAAAGTCGGCAGGCGCCTGTGGTTATATAAAG
TGGTTCAGTTGGCGTTTTCCTGTTGAACATCGAGAGCTTGATGATGTTGC
ACGATTCCAAAGTCGAAATCTGAGTCATGATGTCTTGCTCTTTGCACGCA
GAGCTACCAGCCGCACGTCCCCGAGGAGCACAGGGTCTGGCCCTTCCGAA
AGGCGCTCATGAGGGATTACCTGCTGAGTAAGGACGCCGACGTGGTTTGC
GTGCAGGAAGCGTCTGCCGAAACCTTCGAGTCAGACTTCGACTTCATGAA
AGACGCGGGGTGAGAGATATGCAAAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGGGGGGGGGGGGCATAGGTACAAGCTGTGCCTCCTTTCC
CTCGAAAAGCAATCTCAGGGGAGCTGCAATGGTGTTTTCTCTGATGAGTT
GTAAATCAGGGGCCGTGCTGACTTCGGCAACACAAGTACGTTGGAATCGG
AGAAACAATCAGTACAACACTAGTTTGTTATACCCCTCCCCCCCTCACGT
ACTCGCAACACATTCCCTTGAAGGACTCCCCCCCTTATTTCTTTATGTCT
CTCTCTATCTCTCTCTCGCTACTGTACTGATTTTTGTGTCATGCGTGGGG
GTATTTGCGTGTTTGTTGTGAGCGAGGGAGAGAGGGCCACGTGACAATAC
CCAAACCGGTACTGTTAAGGTATACAGCGGTGCGTACCGGCACCAATGGC
TGACAGCCGCCTGCAGCGCCAGTCTCTGCACCTACGCAAATTAAATTTGT
TACCGGCACTGCACAGGGCACTGGCACTATTCAAGGGCACTACTGTACGA
AGGGCTGCCGACTGTATTTTCGAAGTATGGATAAGAAGTTTCGAACACAC
ACATACACGCACACGCTTCACGCTCAGGTATGACTGCGTGCTCCACTCCA
AGTTCCGCTTCCGCTCGGCCACGTTTTTCAAGACCTCGAGATTGGAGCTG
GCATGCGAGAAGCACAAGGACAGGGTGCTCGTCACTGGCCTCCGCACCCT
AGCGAAAAAGGCGACGGCGGTCACGGCGACCCGCGGACCTCCCTCCGAAA
CTGCACCGCCACCACCACCACCTGCAACGGAGACCTCGGTGGCGGCTGCT
GGCACTGCTGGTACTGCCGCCACAATCGAGAAGGAAGCATCAACCCTGGA
GAGAAGCGCCCCGGGCGGCAACGTTAGCACTGACGCCGACGGACCAGTAG
CAGCCACGGCGACGGGAGCGGGAGCACGAGAGCACAAGGGTGGTGGCGGA
AAGGCTGACGAAGCGGGAGTTTCGAGCGGCCAAAACGGTCGGCTGGTGAT
GGTGGTAAACTGCCACTTGACGGGGGGGGCCGCGCCCGAACGGCGGATGC
GACAGGTCTTGGACGGCCTGGATGCGGCTAGAAAAGAAGCCGCTAGGGTG
CTCTCGGCGCAGGCAGCGGCGGCGATGCCGGCAACACCGAGCAACAAGTC
AAAGGGGCAAAGCAACGGCAAGAAGGGCGGTGGT
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig682:39352..43285-

>mRNA_P-littoralis_Contig682.4.1 ID=mRNA_P-littoralis_Contig682.4.1|Name=mRNA_P-littoralis_Contig682.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1077bp|location=Sequence derived from alignment at P-littoralis_Contig682:39352..43285- (Pylaiella littoralis U1_48)
ATGTGGTCTGGTGCATGCTTCGCGCGTGCAACTGCCACGCTTTTCTTCCT
CCTGGTACACCTGCACATTATTGCTGGCTTTGGCCTGCCGGTGGCACATT
GTAGCCCAGCTTCTGGTAGCGCTGCAGCGAAGACAAGCATCAGGTCTGCT
GCTGCTGCTGCTGCTGCTTCGATGTCGACATCAACAACAGCAACACCAGC
AGTGGATATCCTGCCTGCGAAGGCTCCGCTGCCGCTGCTAGACGATGGCA
TCACGGTGGTGTCTTTCAATGTACTACTTCCAAACGGGAACGATGGCTGG
TGGATGTACAAGAGCTACCAGCCGCACGTCCCCGAGGAGCACAGGGTCTG
GCCCTTCCGAAAGGCGCTCATGAGGGATTACCTGCTGAGTAAGGACGCCG
ACGTGGTTTGCGTGCAGGAAGCGTCTGCCGAAACCTTCGAGTCAGACTTC
GACTTCATGAAAGACGCGGGGTATGACTGCGTGCTCCACTCCAAGTTCCG
CTTCCGCTCGGCCACGTTTTTCAAGACCTCGAGATTGGAGCTGGCATGCG
AGAAGCACAAGGACAGGGTGCTCGTCACTGGCCTCCGCACCCTAGCGAAA
AAGGCGACGGCGGTCACGGCGACCCGCGGACCTCCCTCCGAAACTGCACC
GCCACCACCACCACCTGCAACGGAGACCTCGGTGGCGGCTGCTGGCACTG
CTGGTACTGCCGCCACAATCGAGAAGGAAGCATCAACCCTGGAGAGAAGC
GCCCCGGGCGGCAACGTTAGCACTGACGCCGACGGACCAGTAGCAGCCAC
GGCGACGGGAGCGGGAGCACGAGAGCACAAGGGTGGTGGCGGAAAGGCTG
ACGAAGCGGGAGTTTCGAGCGGCCAAAACGGTCGGCTGGTGATGGTGGTA
AACTGCCACTTGACGGGGGGGGCCGCGCCCGAACGGCGGATGCGACAGGT
CTTGGACGGCCTGGATGCGGCTAGAAAAGAAGCCGCTAGGGTGCTCTCGG
CGCAGGCAGCGGCGGCGATGCCGGCAACACCGAGCAACAAGTCAAAGGGG
CAAAGCAACGGCAAGAAGGGCGGTGGT
back to top