mRNA_P-littoralis_Contig682.28.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig682.28.1
Unique NamemRNA_P-littoralis_Contig682.28.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig682.28.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig682contigP-littoralis_Contig682:131265..133193 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size381
Hectar predicted targeting categoryother localisation
Exons2
Cds size336
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791419.1038773-UTR-P-littoralis_Contig682:131264..1313081680791419.1038773-UTR-P-littoralis_Contig682:131264..131308Pylaiella littoralis U1_48UTRP-littoralis_Contig682 131265..131308 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791419.117624-CDS-P-littoralis_Contig682:131308..1315391680791419.117624-CDS-P-littoralis_Contig682:131308..131539Pylaiella littoralis U1_48CDSP-littoralis_Contig682 131309..131539 -
1680791419.130799-CDS-P-littoralis_Contig682:133088..1331931680791419.130799-CDS-P-littoralis_Contig682:133088..133193Pylaiella littoralis U1_48CDSP-littoralis_Contig682 133089..133193 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig682.28.1prot_P-littoralis_Contig682.28.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig682 131309..133193 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig682.28.1

>prot_P-littoralis_Contig682.28.1 ID=prot_P-littoralis_Contig682.28.1|Name=mRNA_P-littoralis_Contig682.28.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=112bp
WSFSSLLRVVFDGWTADRPGDSSSPGRVVVPSKKSVSRWREEKRANIAAR
KATAREAQAAARQAEVAHMVGVLEQLQKEDEEAGEYPAVYGFIVHDVLSN
RQRKQMQRAAS*
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mRNA from alignment at P-littoralis_Contig682:131265..133193-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig682.28.1 ID=mRNA_P-littoralis_Contig682.28.1|Name=mRNA_P-littoralis_Contig682.28.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1929bp|location=Sequence derived from alignment at P-littoralis_Contig682:131265..133193- (Pylaiella littoralis U1_48)
TGGTCGTTCTCATCGCTACTTCGCGTTGTTTTTGATGGGTGGACTGCTGA
CCGGCCTGGCGACAGCAGCAGCCCTGGAAGAGTGGTGGTACCTTCGAAGA
AGAGTGTGAGGGATCATGTTGTTGTCAGTCCTTCCGTGATTTTTCCTTGC
GGACACACTCCGAAAATTATTTTATCCATGTTCATCCGTTCGGTCGGTTG
TCCTTGTAGTATCCATGCTGTGCTGTCATGGTTTTTTAGAAAAATCAAAT
AACATGAAACAAATAAAGAAGACCCACCCGAGACGGGACGGGGCTCCGTG
GAATGGATGTGTTGAGTTCCTTAGACAGGGTTTAATACGTCGGCCGGGAA
TAAAAACACTTGAAGATAGGTACTCCGAGTACATCATAAGGTAACTCCCC
TGCACAGCTCTGCCAGGTCAAACAGAATATACATATTCGAAGGGGAATCC
TCTGATATATGCCGTGATATTTACTCATATGACATCCATTGTCACACAGG
AACTCACTTTTGCCGAGCCGCGAATCTTAGTGGTTCGAGCACCCTCACTT
CGTGAAGGACTTTCGATGTGATTTGCACACCCCGTTTAGAGCCACGCACG
AACACCCGAATCGTGAACCCACACTTTGAGGCATCGTTCACAATTATATC
TTCATACTTTTTCTATGTATTCGCTTGTTCGGTCGGCAATACCACCCTGA
CTTGAAACTGATTTTATTTCCAACGGACTCACTTCTACTGAAACGTGGGC
AAAATTGTGTTGGCTTACCGAAATTTCAACCATATAAGCATTCGTGATCC
TACAAAAAAATAAAACTTTCCGCGCACACAAACCACCTCCATCGCATGTC
CCCCCCGTGTGACCCAGGGCCGTCACCTACAACACGGCTTCCACCATTTA
ACCATCTATACTTCGCAAGTGGGCATGGCACTGCACCGACGTCTATTTAT
AGCGTTTACTTACGTTCGAACGCTCCCTGTATGATTTTGAGCCGATTGAA
TCCCAGAATGGGTATGCACGAAATTTTTACTGGACGTCGTCGGACTTGTC
CGTTTTATTCTGTCGGGTTCGTGCGGCGTTCTTTGGCTATTCGTTCGCGG
ACACTCGTGAAATCTATCATGATGCAATGATTGGCATCCACAAAAATGGT
TTCATGAACGCCCAACAAACACGTTATTGTACAGCAGCAGCAGTGCTGCG
CGGCTGGTGTTCTTCCAGGATTTGTCAAACCCTGCCAAATTCACTTTTGC
GACCGGTGTACAAGCTAAAGGTGGCCGGGGGAGCAATCTCCCCGATTCAG
GGACAATACAACAGTAGAGTAAAGGGCACTCTCTCCTAGTATCCCATGGC
TCATCACCATACATCTGCAACAGCAGTAGAACTACAGTAGTTGGCGCCAC
AGGTACTCCATGAAAGCGAATACCGGAATCGGATGCTGCCTATCAGGCGC
AACCTGCACGGGCACACCCCACCCTGCCCGTGAAACCATTCGTGAAACGC
GCTGATGGCTAGAGAAACTGACGCGGAATCGGGCACAAAGGTAGGCACTA
TTATTTGTTACGTAAACAAGCGGCATACCAGCTTATTTGCCTATAAGAAT
GGCCCTTTTTACACAACTGCTTTTCGCTGACTCTCTGGGATTTTTAATGC
GAAGGTATCACGTTGGCGTGAGGAGAAAAGGGCGAACATTGCCGCGCGCA
AGGCCACCGCACGCGAGGCACAGGCCGCCGCACGCCAGGCAGAGGTCGCG
CACATGGTAGGGGTGTTGGAGCAGCTACAGAAAGAGGATGAGGAGGCCGG
GGAATATCCGGCGGTGTATGGGTTCATTGTCCATGACGTCTTATCTAACA
GACAGAGGAAACAGATGCAGAGAGCCGCGAGCTAGGCACAGAGAGAGCAA
GCAAAGGCCAGCCGAGTGCGCGCGGAGAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig682:131265..133193-

>mRNA_P-littoralis_Contig682.28.1 ID=mRNA_P-littoralis_Contig682.28.1|Name=mRNA_P-littoralis_Contig682.28.1|organism=Pylaiella littoralis U1_48|type=CDS|length=336bp|location=Sequence derived from alignment at P-littoralis_Contig682:131265..133193- (Pylaiella littoralis U1_48)
TGGTCGTTCTCATCGCTACTTCGCGTTGTTTTTGATGGGTGGACTGCTGA
CCGGCCTGGCGACAGCAGCAGCCCTGGAAGAGTGGTGGTACCTTCGAAGA
AGAGTGTATCACGTTGGCGTGAGGAGAAAAGGGCGAACATTGCCGCGCGC
AAGGCCACCGCACGCGAGGCACAGGCCGCCGCACGCCAGGCAGAGGTCGC
GCACATGGTAGGGGTGTTGGAGCAGCTACAGAAAGAGGATGAGGAGGCCG
GGGAATATCCGGCGGTGTATGGGTTCATTGTCCATGACGTCTTATCTAAC
AGACAGAGGAAACAGATGCAGAGAGCCGCGAGCTAG
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