mRNA_P-littoralis_Contig680.39.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig680.39.1
Unique NamemRNA_P-littoralis_Contig680.39.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig680.39.1 vs. uniprot
Match: D8LFD8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFD8_ECTSI)

HSP 1 Score: 318 bits (816), Expect = 7.390e-92
Identity = 334/656 (50.91%), Postives = 378/656 (57.62%), Query Frame = 2 
Query:  101 MAGALSLEDDILALVKKHSDICLPEELLSRLAEEARLLAVREQIRSLHEADPFGLFSEPPCDDEEEKGDCEEDVSPVGGSNGQGGEVSVTTTAV-VLPDNVEHMLSMMKITRVDK-------------------VAALNGFSTIDAEVEFTRTGKSNTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAPVFLTFRFRREPLFGGNTTNDDXAEDGXXXXXXXNVNGXXXXXXFGGRPERRLGGG---------GGEIIGLATVDDDGDAEETDK-------PRTTGPGSG-----GADVGVVATRANGSEARTSNGSSXXXXXXXXXAAKEGRKRAGSRGADSWEG-----KGRKRSKGTAGGDSDVEEEXXXXXXXXXKDGRTGRCEDGPEKCQTGCCGXXXXXXEGLDYEPRTLVSYSISGGVGFKPAKVLLQAVVYARGDGPACVMPPPRAEKXXXXXXXXXXXXXXXXXXXXXXXXXXGSECNDQEDVFDCNVDGPALAAVGRALGLHTEDPATPLDADLDSGSDDGDDGGVREGAMKRLSQQHLAGKDSEKEGGPAEGRSGAG---MALSDLVWWMLMFPFFEKEFDMVEVVASSVFGDDESDDSDDGG 1921
            MAGA SL+DDILALVKKHSD CLPE+LL+R++E+ARLLA + +IRSLHE DPFGLFS+         G  EE     G  NG GGE +    +   LPDNV  ML  MKI R+DK                   VAALNGF+TIDAEVEF+RTG  +T                                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   ++PVFLTFRFRREPL  G        E G                       R +GGG          GE+I LA  D                 P+    G       G+   V A  A G +     G    XXXXX    KEGRKRAGSRG +S EG     KGRKR              XXXXXXXX K G  G      ++C+           EGLDYEPRTLVSYSISGG+G+     LLQA+VYARGDGPACVMPP      XXXXXXXXXXXXXXXXXXXXXXXXXGS CNDQEDVFDC+V+GPALAA+GRALGLHTEDP T  D+D DS SDDG D  +++   +       + K  EKE   A+G  G G   M  SDLVWW+L+FPFFEKEFD+VEVVASSVFG+D+ DDSDDGG
Sbjct:    1 MAGASSLQDDILALVKKHSDTCLPEDLLARVSEDARLLAAKMKIRSLHEEDPFGLFSD---------GRDEE-----GAENGGGGEGARKVPSTDELPDNVLRMLEGMKINRLDKSSIKGEKVPDSSNLVPRSQVAALNGFTTIDAEVEFSRTGTDSTATAAASAGTDGPALTSAAATRGKPTLSEGTVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA--ESPVFLTFRFRREPLRSG-PAEPSRGEGG-----------------------RAVGGGDARDHDHQEAGEVIDLALDDXXXXXXXXXXXXXXXXXPKGDNEGGSLFEKKGSATAVPAKIAAGKDVSCDGG----XXXXXDSHGKEGRKRAGSRGRESEEGRGGNDKGRKRPXXXXXXXXXXXXXXXXXXXXXGKQGVNGDA----KQCEE--------DDEGLDYEPRTLVSYSISGGIGYDAPATLLQALVYARGDGPACVMPP------XXXXXXXXXXXXXXXXXXXXXXXXXGSACNDQEDVFDCDVNGPALAALGRALGLHTEDPPTS-DSDSDSASDDGGDVRMKDSGAR----PSASAKGPEKEPDTADGEPGKGIGSMTQSDLVWWLLLFPFFEKEFDVVEVVASSVFGEDDLDDSDDGG 589
[Close]
BLAST of mRNA_P-littoralis_Contig680.39.1 vs. uniprot
Match: A0A6H5K398_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K398_9PHAE)

HSP 1 Score: 289 bits (740), Expect = 1.740e-81
Identity = 305/631 (48.34%), Postives = 351/631 (55.63%), Query Frame = 2 
Query:  101 MAGALSLEDDILALVKKHSDICLPEELLSRLAEEARLLAVREQIRSLHEADPFGLFSEPPCDDEEEKGDCEEDVSPVGGSNGQGGEVSVTTTAVV-LPDNVEHMLSMMKITRVDKVAALNGFSTIDAEVEFTRTGKSNTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAPVFLTFRFRREPLFGGNTTNDDXAEDGXXXXXXXNVNGXXXXXXFGGRPERRLGGGGGEIIGLATVDDDGDAEETDKPRTTGPGSGGADVGVVATRANGSEA-----RTSNGSSXXXXXXXXXAAKEGRKRAGSRGADSWEGKGRKRSKGTAGGDSDVEEEXXXXXXXXXK---------------------DGRTGRCEDGPEKCQTGCCGXXXXXXEGLDYEPRTLVSYSISGGVGFKPAKVLLQAVVYARGDGPACVMPPPRAEKXXXXXXXXXXXXXXXXXXXXXXXXXXGSECNDQEDVFDCNVDGPALAAVGRALGLHTEDPATPLDADLDSGSDDGDDGGVREGAMKRLSQQHLAGKDSEKEGGPAEGRSGAG---MALSDLVWWMLMFPFFEKEFDMVEVVASSVFGDDESD 1903
            MAGA SL+DDILALVKKHSD C PE+LL+R++E+ARLLA + +IRSLHE DPFGLFS    +D              G  NG GG+ +    +   LPDNV  ML  MKI R+DKVAALNGF+TIDAEVEF+RTG +++T                                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  +PVFLTFRFRREPL  G   + D               G       GG           E+I LA +DD                 G  + G +  +   + A       S   S           KEGRKRAGSRG                         XXXXXXXXX                      DG   +CE+                 EGLDYEPRTLVSYSISGG+G+     LLQA+VYARGDGPACVMPP       XXXXXXXXXXXXXXXXXXXXXXX GS CNDQEDVFDC+V+GPALAA+GRALGLHTEDP T  D+  DS SDDG D  +++   +       + K  EKE   A+G  G G   M  SDLVWW+L+FPFFEKEFD+VEVVASSVFG+D+SD
Sbjct:    1 MAGASSLQDDILALVKKHSDTCFPEDLLARVSEDARLLAAKMKIRSLHEEDPFGLFSYGRDED--------------GAENGGGGDGARKVPSTDDLPDNVLRMLEGMKINRLDKVAALNGFTTIDAEVEFSRTG-TDSTATAAASAGTNGPTVTSSAATRGKPTLSERTVAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGSPVFLTFRFRREPLGRGPAESWD---------------GRGKRVALGGDVHDNDHQKAREVIDLA-LDDXXXXXXXXXXXXXXTPKGDNEGGSLFEKKGSATAVPNKIAASRDISCDDGGGGDSHGKEGRKRAGSRGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKQGVDGDAKQCEE---------------DDEGLDYEPRTLVSYSISGGIGYDAPATLLQALVYARGDGPACVMPP-------XXXXXXXXXXXXXXXXXXXXXXXGGSVCNDQEDVFDCDVNGPALAALGRALGLHTEDPPTS-DSHSDSSSDDGGDVRMKDSGAR----PSASAKGPEKESDTADGEPGKGIGSMTQSDLVWWLLLFPFFEKEFDLVEVVASSVFGEDDSD 573
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig680.39.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LFD8_ECTSI7.390e-9250.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K398_9PHAE1.740e-8148.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig680contigP-littoralis_Contig680:142408..150788 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LFD8
Model size3859
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons6
Evalue5.65e-98
EggNOG OGs2EXJ4@1|root,2SZ7F@2759|Eukaryota
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_005910.1
Cds size1830
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig680.39.1prot_P-littoralis_Contig680.39.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig680 142508..148859 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791416.970214-UTR-P-littoralis_Contig680:142407..1425071680791416.970214-UTR-P-littoralis_Contig680:142407..142507Pylaiella littoralis U1_48UTRP-littoralis_Contig680 142408..142507 +
1680791417.0452442-UTR-P-littoralis_Contig680:148859..1507881680791417.0452442-UTR-P-littoralis_Contig680:148859..150788Pylaiella littoralis U1_48UTRP-littoralis_Contig680 148860..150788 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791416.980957-CDS-P-littoralis_Contig680:142507..1426411680791416.980957-CDS-P-littoralis_Contig680:142507..142641Pylaiella littoralis U1_48CDSP-littoralis_Contig680 142508..142641 +
1680791416.9921696-CDS-P-littoralis_Contig680:144417..1446251680791416.9921696-CDS-P-littoralis_Contig680:144417..144625Pylaiella littoralis U1_48CDSP-littoralis_Contig680 144418..144625 +
1680791417.0012553-CDS-P-littoralis_Contig680:145399..1462661680791417.0012553-CDS-P-littoralis_Contig680:145399..146266Pylaiella littoralis U1_48CDSP-littoralis_Contig680 145400..146266 +
1680791417.0108042-CDS-P-littoralis_Contig680:146905..1471311680791417.0108042-CDS-P-littoralis_Contig680:146905..147131Pylaiella littoralis U1_48CDSP-littoralis_Contig680 146906..147131 +
1680791417.0252457-CDS-P-littoralis_Contig680:147583..1478661680791417.0252457-CDS-P-littoralis_Contig680:147583..147866Pylaiella littoralis U1_48CDSP-littoralis_Contig680 147584..147866 +
1680791417.0351713-CDS-P-littoralis_Contig680:148747..1488591680791417.0351713-CDS-P-littoralis_Contig680:148747..148859Pylaiella littoralis U1_48CDSP-littoralis_Contig680 148748..148859 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig680.39.1

>prot_P-littoralis_Contig680.39.1 ID=prot_P-littoralis_Contig680.39.1|Name=mRNA_P-littoralis_Contig680.39.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=610bp
MAGALSLEDDILALVKKHSDICLPEELLSRLAEEARLLAVREQIRSLHEA
DPFGLFSEPPCDDEEEKGDCEEDVSPVGGSNGQGGEVSVTTTAVVLPDNV
EHMLSMMKITRVDKVAALNGFSTIDAEVEFTRTGKSNTTASSATTTTTAA
AAATIKNTSGTTSASVQTTLAEATMEAAAAAAVAEADAGAARSSSDDDND
DDNDDDDEKAPVFLTFRFRREPLFGGNTTNDDDAEDGGGGGGGGNVNGNG
NGNGFGGRPERRLGGGGGEIIGLATVDDDGDAEETDKPRTTGPGSGGADV
GVVATRANGSEARTSNGSSSSSARGGGSAAKEGRKRAGSRGADSWEGKGR
KRSKGTAGGDSDVEEEEDEEEEADGKDGRTGRCEDGPEKCQTGCCGGGGG
GGEGLDYEPRTLVSYSISGGVGFKPAKVLLQAVVYARGDGPACVMPPPRA
EKDKGGGDDDGNDDDDEEDEEDEEDEEEGSECNDQEDVFDCNVDGPALAA
VGRALGLHTEDPATPLDADLDSGSDDGDDGGVREGAMKRLSQQHLAGKDS
EKEGGPAEGRSGAGMALSDLVWWMLMFPFFEKEFDMVEVVASSVFGDDES
DDSDDGGAI*
back to top

mRNA from alignment at P-littoralis_Contig680:142408..150788+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig680.39.1 ID=mRNA_P-littoralis_Contig680.39.1|Name=mRNA_P-littoralis_Contig680.39.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=8381bp|location=Sequence derived from alignment at P-littoralis_Contig680:142408..150788+ (Pylaiella littoralis U1_48)
TCCGTTTCTCCCCTCTTCCCACCTTTCCCTGAGACACAGACAAACAAGCT
AAGAGTTGAGCGAGAGAGAAACCTGCTGGCAACGCCCGTTACATCGTAGG
ATGGCGGGAGCTCTCTCTCTAGAGGACGACATATTGGCGTTGGTGAAGAA
GCACAGTGACATCTGCCTGCCAGAGGAGCTGCTTTCGCGCTTAGCAGAGG
AAGCTAGGCTGCTCGCTGTTCGGGAACAGATAAGGTGCCGTTGCCGGTTG
ATACCTGCCATTGGGCCTGCGGCGTAACGTTTTCTCTGCTCTGCGCACCC
ACCCAACCTTGGTTTGGGTCGTAGAATGTCATGCCCCGTAGCACCCAACC
CAACCCCCCGTTTGCTACTCAGCGCAGATGCGTTGGTATCGTGGTGAATC
CCGAAGTCCAGGGGAGGCTGCACTGCCTGTCTGTTACTCCTAGACAGGGT
TGTATCATGTATCATTATTCTTTGTTGTTGTCGTTGATTCTATCATATCA
TTGCTGTGTTAGCAGAGGACAGCGGTACCTGCAGCCGCCGTCAGAGCACC
CCTTCACATTTGGGTCCAACATCTTTCGTATCCCACTGCAGCCTGCCCTT
ACCCCACTACCGTCGATTTTGCACCGGTTGCGCTGGTGGCGTCTTTGCAA
GTACGTCACGCCTGCTGTAGGCGCTCGATGAGGTGGCTGCCGTATCCACT
GAATGAGTACCCACCAATTGATTCCCTTCGCGAAATAATGAAAAAAAATG
TGTTGGGTCTCAAGATAATTCCGTTACAGCAGTACCGGTACTCCAGTGAT
GCTGCACCGGTATCAAACCTGCTTGTGTGTTGGTATCGTATTATGCTATG
TGTGCATACGGTATGTTTCCCTGTTCCGTGGACTACTGCTGTAATGTGGG
CAGAGCATAACAGGACACCCAGCAAGAATCGCACGACAGGAGTAGTACTG
CGTAAAGGAGGCTCGATTCACCCCAGGAAATAACGAGTAAAGTAATTTTA
TCATGGAATCGTAATGGCCAACACACTTTGCAGTGCCGAAAGCGTAACTA
ACGAAAGCGTTCATCTTGTATCTTTCCCTGGTACGAAGTACAGCTGTCCC
AGCCAGGCAATTCGGTCAAAGCACGATACGTGACGTTGTGTATCACCCCC
CCCCTGGACTAACTCTGAAAGCTTCAGCAATGCACCCACAGAAACGCGAG
AGGTCACAGAGGTGACAGCGGTACTGGTGGCGCGGAAACGGCCTCGTTGA
GTGAGTTTCGGAAATTCGTCGGTGTCGGTTGGTATGATGGTATCATGTGA
ACTGGCACCCTCTTCCCTGATGAATTATGAACTGAACGAAACACTCGACC
TTTCACTGCAGTATTCGACCTGCGACGGGGGAGGGGGGGTTCGGATATAC
CACGTCGCCCCCGGTAGATTGTTCCTACCGTATGTAGGTCGCACGAAATT
CCAAACGGGACCACCGAACCGATGCTCGAAGCGCGCTTCGTCTACAGCCG
AAAAAAAGTGTCGGTTACGTACGAGAAAAGGTACTGCGAAGTACTCCGTA
CAATATACCAGACGTCGTTTGATGTTGGCATACCCTTCGTCGAGGGCACA
CGGGAGCTTCGAAAGCGGCTCAGGGGTATTCTTGCGTCTTGCAACGATTC
CTCGGAGAGCTTTCCAAAGCTAATCGGTTGATCTTCGTACCCTCTTTTTT
TGGCGGAAAGCAGCTTTGAAAAGCGATAACCCCCGGGGAGCTGAAACGGT
ACATTGTCTGATGAGTGTAGAAATATCACAACAGGTGTCACATATATATG
TGTATATAGATGAAGTATTTATTGTTTGCTTGCGTTGGTAATCTGCTCTA
GATCACCACCTGGAGAGAGGCGAACACATTGACCAATGTGTTCGTGAAAA
AATAAGAATAAAAAGCGGCCCGAGGGGTCCCGTGGTATAGTATGCGGACT
ACAGAGGTTTGGCGTTTTTTTACTGTGGGTATCCTGTGCCGCTGTGTTCA
TTATGTTCAGGTCACTGCACGAGGCAGACCCGTTCGGTTTGTTCTCGGAG
CCGCCTTGTGACGACGAGGAGGAGAAGGGAGACTGCGAGGAGGATGTATC
ACCGGTGGGGGGCAGCAACGGTCAAGGGGGGGAGGTGTCAGTGACTACCA
CAGCAGTAGTCTTGCCGGACAACGTCGAGCACATGCTCAGCATGATGAAG
ATCACTCGTGTGGACAAGGTGTGTAAATCTTTTATGTGGCGAGTGAACGA
AACCCAACCACCGCACCGCAACAACTTCCTCGAAACATTAGCGACATGCC
CAATGGTGATACTTCGAAGTGCATGCGTACATGCTGGTGTGCCGCACGGT
GTGTGATATCCCATATGGAGTACTACTACTGGTGCTAAACTGGCCAAGCG
GCTATCCCGCGGGTCACCTGGCACCGCAGTTCTTGCGCTGCTGTGAGTGC
TGAAGCGCCATGTGTGTCCACACCCACGAGTATTCACCTGGTTGGTGGCA
TCGGTGATTTCGGTCGGGGTAAAGCTTCTCCTAGAGTATGTGCGAAATTA
TCTTGCGCCGACACAGACGGAACACCGGCCGAGACGCCGGTACCGTCCCT
CTCCTTCCGCGGAAGCTGTTGGCAGCAGCACCGCACGTGGTTACTGTTTC
AAAGGGTGCCGCATGCTGTTGTTGACTGCAACAACGGCTTTGCTCACCGT
CTTTTTTTTGTATGCCGCGCGTGCTGCGGCAAGACGTGGTGTATGTGAGA
GCTGATGAGCCTCCGGGACTCCGATCGATTGCCCGGAGCCAAGTCAAACG
TCGTCAGCTTGTGATTCTACCCGCGTGTTTTGTTGTTGTTGTCCACTCCG
GTTGACCGACTGCTAGCAGAACACGGGTTCTTCGCTCAAAGTTTCACTTT
TATTTTACCACGATGAAAAGCGGAAGGGCACCGACTGCCTGGATTGATCA
CCACGTCTTTAATTTTTTGTCCGCGCTTTTAATTTTTTTCAGGTGGCGGC
TTTGAACGGCTTCTCGACGATCGACGCCGAGGTAGAGTTCACACGTACAG
GGAAGAGTAACACAACTGCCAGTAGCGCCACCACCACCACCACCGCCGCC
GCCGCCGCCACCATCAAGAACACCTCCGGAACAACTTCAGCCTCTGTGCA
AACAACACTAGCAGAAGCCACGATGGAAGCAGCAGCAGCTGCAGCGGTAG
CAGAGGCAGATGCAGGCGCAGCACGATCTTCTTCCGACGACGACAACGAC
GACGATAATGATGATGATGACGAAAAAGCACCCGTGTTCCTCACGTTCCG
ATTCCGGCGAGAACCGTTATTCGGGGGCAACACAACCAACGACGACGACG
CGGAAGATGGAGGCGGCGGCGGCGGCGGCGGTAACGTCAACGGTAACGGT
AACGGTAACGGTTTTGGCGGCCGCCCCGAAAGGCGGCTCGGTGGCGGGGG
CGGCGAGATCATCGGACTGGCCACCGTCGACGACGACGGAGATGCAGAGG
AAACGGATAAACCGAGGACCACGGGTCCCGGCAGCGGTGGCGCCGATGTC
GGGGTCGTTGCTACCAGAGCAAACGGCAGCGAAGCTCGCACCAGCAACGG
CAGCAGCAGCAGCAGTGCCAGAGGGGGGGGCAGTGCCGCGAAGGAGGGTC
GCAAGAGGGCCGGGTCGAGGGGGGCGGATAGTTGGGAAGGGAAGGGGAGG
AAGAGGTCCAAGGGTACGGCAGGAGGTGACAGTGATGTGGAGGAGGAGGA
GGACGAGGAGGAAGAGGCGGACGGGAAAGATGGGCGGACCGGTCGCTGCG
AAGATGGCCCAGAGAAATGTCAGACCGGCTGCTGTGGAGGTGGAGGTGGC
GGGGGTGAGGTGAGACACCCCATCTGTGCCCTGCTGCTTCGATGTGCCTA
TTGGTCTGCTCTGCTCCGCCGCGGCGTCCTTGCCGCACTCTTTCCCTTGG
ACGCCTCCACCATGCTGCTCCAACCTCGTGGCACGAAGCAGTCTCGTCGA
GGAGGGCTGAGTACCACTCCTAGCCTGCCTCTGACGCTCGTTTCGTTGCG
CCCGTAGTCTCGCCGTCGATGCCGCGTTTTTGTTTTGTTCAGGTCATAAT
TAGTCAAAGTTGTTGCGGACTGCTCTATTTCCCTTGTTGAGCACACCTTA
GAAAAAAGAAAAAACATCCGATGGGCAGAGAGAGGTGGGGCTGCCACGAG
AGCCTCAGATGCTCCCACATGCTTGTTCCAAGATTTTCCCCCTGGTTTTT
GGACCACCCTTCTTATCTTTTGGCCAAAACACCCAGCGAATCGCACCCTT
ACTCCCTCTCCCTCCCCTTGGTCGATGAACACCCGGCTGTTGCTCCGTCC
AAGGACTATACTGTATGGATGCGAAGCTGATACACCTGTAGTGAAGTGAT
GGTTTGCGCAAGCAACAACTGAGTCACCCCCCCCCCACCCCCCACCGCCC
TCTTTCGCACCTAATCCACGTGATGACACCAAACGGCACGACGAGGAGGG
GCTGGACTACGAGCCTCGCACGCTCGTCTCGTACTCCATCAGCGGAGGCG
TCGGATTCAAACCTGCGAAAGTGCTGCTGCAGGCGGTGGTCTACGCTAGG
GGAGACGGTCCGGCGTGTGTGATGCCGCCTCCCAGAGCAGAGAAGGATAA
AGGCGGCGGCGACGATGATGGCAACGACGACGACGACGAGGAGGACGAGG
AGGACGAGGAGGACGAGGAGGAAGGTCAGTCAGGCGAAGCCCCCCCCTCC
CTGCACACACCGATGTATGCCACGGGGCCCCTCACAAGGACCTCTCGCGG
GACATTGTGGCTTGGAGGCGCCTCACCTTACCCTTCTCTCACATTGCTGC
GTGCGTTCTCGAGAGGATGTATGCAGCAAACACGGGGGCCGTTGCAACAA
CGTGAATCGTTCTTCCCGCTTTGTAGAATGTCGATCGATGCAAGGCATCA
TCGAGGATTACCATGTCTACCCCCCGGAGGGCGGACCATTTTTCGTGTCT
CGGGGTAGCAGTTCCCGCACGTGTTCGGGACCACACGGATCGCGACTGAT
GACGTTGTTCTTTTTCGGCTGCTGCCTCTTCCCTTCGCCACTTCTCTCAT
CCTTACCCGCCGTGTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTGGT
TGAACTTTGGGGGGAAATCGTTTCAGGGAGCGAGTGCAACGATCAGGAGG
ACGTGTTCGACTGCAACGTTGACGGCCCGGCGTTGGCTGCCGTGGGGCGG
GCTCTCGGGTTGCACACCGAAGACCCAGCCACTCCGCTAGACGCCGACTT
GGATTCGGGGTCCGACGACGGAGATGATGGTGGTGTGAGAGAGGGCGCGA
TGAAGAGACTGTCACAGCAGCATCTGGCGGGGAAAGACTCCGAGAAAGAA
GGGGGCCCGGCAGAGGGGAGGAGTGGGGCAGGCATGGCCCTGTCGGATCT
CGTCTGGTGGTGAGTGAGATGCGCGATGGCTTCGAGTTCTCACGGCACCT
TACTGTAGGTGTGGTGCCTGACCTCATTTCCCACACCATTCAAAGCTGCT
TGTTTTGATTCGCCTGCCCTGCTTGTCAACACATGCGCCCCGAAAAAAAG
TAGCGCAGATACAGCCACCCCTGTTGCAACGCACGAAAATCTAAGATGGG
TATACGAAGTACCTGGTACTCCGAAGTGCGTAGTGGGCGCTTTCCAGCAC
CGGAGAAGCAATGGCGGTAATGCAGATGCCCTTTTTTCTGCCATTGTTTG
GACTCTGCTGTTCATGGGACAAAGACCTTTCTTTGTACCCTACCCTCTCC
TTGTTCCCGCCCCTGGCACTTGTCAGTGCAGCACGCAACGTTTTCAGTTG
CTCTCCATTTTCTTGTGCAATATCTACCCCTGCTGCGAATTGTTCCAAGC
ATACCCAAAGACTATGGAATACATGTGCCCTGCCCTCTCTTTATTTGCTC
TCCTGCGCTGCGGTGAATCTGTTTCAGAGGCAAAGAGAATAAAACGCGCA
CCGCCGCTCTGCTCCCTGCCTGCTGCCGCCCGTGCTGCTGCAATAGATTA
TTTGCTCTCCTGCGCTGCAGTAAATTGTTTCAGAGGCAAAGAGAATAAAA
CGCGCACCGCCGCTCTCCTCCTTGCCTGCTGCCGCCGCTGCTGCAATAGA
TGGCCTTGCTGTATGGTGTGTTTTCATCGACAAGGAGCACAAATATCGCG
CTACCTCCTCCGTTTCTGCTGCTGCAATATATATATAAGGGTTGCTCTGA
GTTGTCAACGACAATGAGCACAACGTCTCGGTCCAACCTCTTTTTGTTTT
GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCCTCTGCAGGATGCTGATG
TTCCCGTTTTTTGAGAAGGAATTCGACATGGTGGAGGTGGTGGCGTCGAG
TGTTTTCGGCGACGACGAGTCGGATGACTCCGATGACGGAGGTGCTATCT
GAAGCACAGATAGCTATAGCATGGAGGCGATAGATCGTGAATCCTCGTGA
TCGATAGCATGGGTAGTGGCAGATCGTGAAGCGTGCGGTAAAAAGTGTAG
AATGGCAGGCAACATCGCAGCATATTGCACGAGCATTAGTCTCCTCTTGG
AAAGCCGGTGCTACCCCCCAAAAGAAGGCAGGAGGCAAAAGGGCCTGCTT
GCCGATGCCAGCGTGCATCAAGGCCCGACACCAAAAGGCGCCAGCGATGT
CGGGCTCGGCTCTGCTTGAACCACTTGCGATCACGGTGGGGTCATTTGTC
CACGCGATGACTGTCCGAACCCTGCATTAGTTTTTCACCTCTGATTACAG
GTGGTGAACAGTAATTGAACCCTGCATTGTTTGAAGCCAAGTTCCATGTT
TTTTTATGTTGTGGCAATGGGTTTTGCGCAGGGAAGAGTCCCTTACCGAT
GCCAGCCTCTCAGGAATTCCCACTCATTGGCGTTGCTGTAGGCTACGGCG
GCACCGGCTGTTGCGCGAGCTTGGATGGTCGCTAAACGGCGAGGTATTCT
CCTCGGAATTGTCACGCTAGTATGACTTTGCTCTGTATTTTGTCAGGATG
GGATGACCATTTGTTGCTCACATCGTGGCCAAGCGGTGACTACCGCTGCG
TTAAGCTCGGCCGACCATGCGGTGATTGTCTGAAAAAACTCCGCATTAGT
TTTTGTCGGTTTCAAGCAGTTTTTATGTTTTCGTTGCGACGATAAATATT
TCTTCCAGCGGCGGTGCTCACCGGCTCAGTTGGGCCGACAGGAATCAACT
GCTTCTGGGCGCTCCCTTCGTGCAGGCTGTGCTTTTGTACTTCGAAGTAA
AGGGTTTATCCGTAAGTCACGTTTAGCGTTCGTCTTGGCTTACGGTGTAT
GACATCCAAATCATTTCTGCATTCTTTGTGCAAGCTGTGCGAGGGTTTAT
TCGTAAGCCACGTTTGGCGTTCGTCTTGGCTTGCTTGCGGTGTATGACAT
CCAAATCATTTCTGCATTCTTTGTGCAAGCTGTGCGAGGGTTTCTTCATG
AAGCCAAATTTTTCGGCGTTCGTCTCGATTCGTGGTGTACCTTATTATGT
TATGCATTATTTGTGCAAGCTGTGCGAGGGTTTATTATTCGTATGGGCCA
CTCTTGGCGGTTGTCTTGATTTGCGGTGTACGCAAGTATTTATGCAGCAA
CAATATGGCGTGGTAAGAGCCAAACCAACTTCGAAGCAGGTATGATAGTA
CAAACTGTATACCGGCGTCGTCTCCTGCAACCACTGCGCATCGCAGGAAA
GCAAGGGAGCTTTGTCGACCAATAATCGCAAGGGGGAAGTAAAAAAGTTT
TGTTCGGGCATGTCCTTCCCGCAACTAGAGTACAATGCAGTATCCGAATG
AAATGTGTGAAACATGAGTTTATGCTTAGTGTGCCCATTGTATAGCTCGG
TGTTGCGTCGACTGAGAGGAAAAAGTGTCGTAAGTTGTGTCGTTTGATGC
AATTTTCCTCTTGTTTTTTTTTTGTCGATTTGGGAGCTACATGTAACCGG
TTTTGCCTGCGTTTTTGCTGATATTTTTATGTTGAAACAGTCGTCTCCGT
TGTGTTGCTGAGATTTTCACGTTGAAATCGGTTGTGCCTCCGGTGTTGCT
GAGATATGAATTAGGGAAGAATCGGACTCCACGAACTCACCTCCGGCGCG
CCTTCATTGGTCTGTCTGTATTCCACTCAATTAAAGCAGTCGAAAGTGTC
TTCGCAGTGCGGGTTATTTGCGCGTATCCAGTAAGACTCAACAGCGTGCA
GCGAGGCTGAACACGTTCGGGTTGAAAGACGTGAGGTACGTATATCCAAC
TTCTTGTTTCAGAGACGGGGGGGCCTTTGGGACCACCCCGCCTCCCAAAA
AATCGAGAACACCCCCCCCCCCTGGAGTTCC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig680:142408..150788+

>mRNA_P-littoralis_Contig680.39.1 ID=mRNA_P-littoralis_Contig680.39.1|Name=mRNA_P-littoralis_Contig680.39.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1830bp|location=Sequence derived from alignment at P-littoralis_Contig680:142408..150788+ (Pylaiella littoralis U1_48)
ATGGCGGGAGCTCTCTCTCTAGAGGACGACATATTGGCGTTGGTGAAGAA
GCACAGTGACATCTGCCTGCCAGAGGAGCTGCTTTCGCGCTTAGCAGAGG
AAGCTAGGCTGCTCGCTGTTCGGGAACAGATAAGGTCACTGCACGAGGCA
GACCCGTTCGGTTTGTTCTCGGAGCCGCCTTGTGACGACGAGGAGGAGAA
GGGAGACTGCGAGGAGGATGTATCACCGGTGGGGGGCAGCAACGGTCAAG
GGGGGGAGGTGTCAGTGACTACCACAGCAGTAGTCTTGCCGGACAACGTC
GAGCACATGCTCAGCATGATGAAGATCACTCGTGTGGACAAGGTGGCGGC
TTTGAACGGCTTCTCGACGATCGACGCCGAGGTAGAGTTCACACGTACAG
GGAAGAGTAACACAACTGCCAGTAGCGCCACCACCACCACCACCGCCGCC
GCCGCCGCCACCATCAAGAACACCTCCGGAACAACTTCAGCCTCTGTGCA
AACAACACTAGCAGAAGCCACGATGGAAGCAGCAGCAGCTGCAGCGGTAG
CAGAGGCAGATGCAGGCGCAGCACGATCTTCTTCCGACGACGACAACGAC
GACGATAATGATGATGATGACGAAAAAGCACCCGTGTTCCTCACGTTCCG
ATTCCGGCGAGAACCGTTATTCGGGGGCAACACAACCAACGACGACGACG
CGGAAGATGGAGGCGGCGGCGGCGGCGGCGGTAACGTCAACGGTAACGGT
AACGGTAACGGTTTTGGCGGCCGCCCCGAAAGGCGGCTCGGTGGCGGGGG
CGGCGAGATCATCGGACTGGCCACCGTCGACGACGACGGAGATGCAGAGG
AAACGGATAAACCGAGGACCACGGGTCCCGGCAGCGGTGGCGCCGATGTC
GGGGTCGTTGCTACCAGAGCAAACGGCAGCGAAGCTCGCACCAGCAACGG
CAGCAGCAGCAGCAGTGCCAGAGGGGGGGGCAGTGCCGCGAAGGAGGGTC
GCAAGAGGGCCGGGTCGAGGGGGGCGGATAGTTGGGAAGGGAAGGGGAGG
AAGAGGTCCAAGGGTACGGCAGGAGGTGACAGTGATGTGGAGGAGGAGGA
GGACGAGGAGGAAGAGGCGGACGGGAAAGATGGGCGGACCGGTCGCTGCG
AAGATGGCCCAGAGAAATGTCAGACCGGCTGCTGTGGAGGTGGAGGTGGC
GGGGGTGAGGGGCTGGACTACGAGCCTCGCACGCTCGTCTCGTACTCCAT
CAGCGGAGGCGTCGGATTCAAACCTGCGAAAGTGCTGCTGCAGGCGGTGG
TCTACGCTAGGGGAGACGGTCCGGCGTGTGTGATGCCGCCTCCCAGAGCA
GAGAAGGATAAAGGCGGCGGCGACGATGATGGCAACGACGACGACGACGA
GGAGGACGAGGAGGACGAGGAGGACGAGGAGGAAGGGAGCGAGTGCAACG
ATCAGGAGGACGTGTTCGACTGCAACGTTGACGGCCCGGCGTTGGCTGCC
GTGGGGCGGGCTCTCGGGTTGCACACCGAAGACCCAGCCACTCCGCTAGA
CGCCGACTTGGATTCGGGGTCCGACGACGGAGATGATGGTGGTGTGAGAG
AGGGCGCGATGAAGAGACTGTCACAGCAGCATCTGGCGGGGAAAGACTCC
GAGAAAGAAGGGGGCCCGGCAGAGGGGAGGAGTGGGGCAGGCATGGCCCT
GTCGGATCTCGTCTGGTGGATGCTGATGTTCCCGTTTTTTGAGAAGGAAT
TCGACATGGTGGAGGTGGTGGCGTCGAGTGTTTTCGGCGACGACGAGTCG
GATGACTCCGATGACGGAGGTGCTATCTGA
back to top