mRNA_P-littoralis_Contig117.140.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig117.140.1
Unique NamemRNA_P-littoralis_Contig117.140.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig117.140.1 vs. uniprot
Match: A0A6H5J7J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7J8_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 8.570e-8
Identity = 24/36 (66.67%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:    1 EAIPLLKRALSIRTKKLGEDHPYTVRTRNRLEIVRK 108
            +A+PLL+RALSIR KKLGE+HP TV T+N L++VR+
Sbjct:    6 DAVPLLERALSIRMKKLGENHPDTVSTQNSLDVVRR 41
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BLAST of mRNA_P-littoralis_Contig117.140.1 vs. uniprot
Match: D8LKS1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKS1_ECTSI)

HSP 1 Score: 45.4 bits (106), Expect = 3.890e-5
Identity = 25/38 (65.79%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:    1 EAIPLLKRALSIRTKKLGEDHPYTVRTRNRLEIVRKEV 114
            EA+PLL+RA SIR KKLGE+H YTV T+  LE V+K V
Sbjct:   24 EALPLLERASSIRGKKLGENHHYTVDTQISLERVQKHV 61
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig117.140.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J7J8_9PHAE8.570e-866.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKS1_ECTSI3.890e-565.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig117contigP-littoralis_Contig117:476938..477051 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size114
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size114
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789490.1741133-CDS-P-littoralis_Contig117:476937..4770511680789490.1741133-CDS-P-littoralis_Contig117:476937..477051Pylaiella littoralis U1_48CDSP-littoralis_Contig117 476938..477051 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig117.140.1prot_P-littoralis_Contig117.140.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig117 476938..477051 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig117.140.1

>prot_P-littoralis_Contig117.140.1 ID=prot_P-littoralis_Contig117.140.1|Name=mRNA_P-littoralis_Contig117.140.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=38bp
EAIPLLKRALSIRTKKLGEDHPYTVRTRNRLEIVRKEV
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mRNA from alignment at P-littoralis_Contig117:476938..477051-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig117.140.1 ID=mRNA_P-littoralis_Contig117.140.1|Name=mRNA_P-littoralis_Contig117.140.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=114bp|location=Sequence derived from alignment at P-littoralis_Contig117:476938..477051- (Pylaiella littoralis U1_48)
GAGGCAATTCCACTATTGAAGCGGGCCCTCTCAATCCGTACGAAGAAGCT
TGGGGAAGACCATCCCTATACGGTCCGCACTCGGAACAGACTGGAAATTG
TGCGAAAAGAGGTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig117:476938..477051-

>mRNA_P-littoralis_Contig117.140.1 ID=mRNA_P-littoralis_Contig117.140.1|Name=mRNA_P-littoralis_Contig117.140.1|organism=Pylaiella littoralis U1_48|type=CDS|length=114bp|location=Sequence derived from alignment at P-littoralis_Contig117:476938..477051- (Pylaiella littoralis U1_48)
GAGGCAATTCCACTATTGAAGCGGGCCCTCTCAATCCGTACGAAGAAGCT
TGGGGAAGACCATCCCTATACGGTCCGCACTCGGAACAGACTGGAAATTG
TGCGAAAAGAGGTT
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