mRNA_P-littoralis_Contig680.22.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig680.22.1
Unique NamemRNA_P-littoralis_Contig680.22.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig680.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig680contigP-littoralis_Contig680:72858..74978 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size638
Hectar predicted targeting categorysignal peptide
Exons3
Cds size543
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791416.202155-UTR-P-littoralis_Contig680:72857..729151680791416.202155-UTR-P-littoralis_Contig680:72857..72915Pylaiella littoralis U1_48UTRP-littoralis_Contig680 72858..72915 -
1680791416.214856-UTR-P-littoralis_Contig680:73649..736631680791416.214856-UTR-P-littoralis_Contig680:73649..73663Pylaiella littoralis U1_48UTRP-littoralis_Contig680 73650..73663 -
1680791416.2465658-UTR-P-littoralis_Contig680:74955..749781680791416.2465658-UTR-P-littoralis_Contig680:74955..74978Pylaiella littoralis U1_48UTRP-littoralis_Contig680 74956..74978 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791416.224744-CDS-P-littoralis_Contig680:73663..741451680791416.224744-CDS-P-littoralis_Contig680:73663..74145Pylaiella littoralis U1_48CDSP-littoralis_Contig680 73664..74145 -
1680791416.2355933-CDS-P-littoralis_Contig680:74894..749551680791416.2355933-CDS-P-littoralis_Contig680:74894..74955Pylaiella littoralis U1_48CDSP-littoralis_Contig680 74895..74955 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig680.22.1prot_P-littoralis_Contig680.22.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig680 73664..74955 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig680.22.1

>prot_P-littoralis_Contig680.22.1 ID=prot_P-littoralis_Contig680.22.1|Name=mRNA_P-littoralis_Contig680.22.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=181bp
MRLPGVTGAIWASFIIAAPEASGARPVLDTCTPLDTVSLLGAQPTQDGWR
TSASIEQDLDLDDNAVSSSLRNACIGVKGKQLRKDLWDRLGKKGVYRRLG
RQRPHRVWWLAFCGEGNPAPDISPPRDFDERVRMGLLVAGEDAVDEDRSA
AAQEKETYASGGIARARDEEGCCCWGGSDR*
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mRNA from alignment at P-littoralis_Contig680:72858..74978-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig680.22.1 ID=mRNA_P-littoralis_Contig680.22.1|Name=mRNA_P-littoralis_Contig680.22.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2121bp|location=Sequence derived from alignment at P-littoralis_Contig680:72858..74978- (Pylaiella littoralis U1_48)
ATCGGAGATCATCCCCACAAGCGATGCGGCTGCCTGGGGTCACCGGAGCG
ATCTGGGCCAGCTTCATCATCGCTGCCCCAGAAGGTACGACGGTCGACTA
TGGTGTAGATTATGTTGAAAGATGACGACGCTGAAAGTTTCGTGTCTTTT
GGTGAGCTGTGTGTCGAAGTCTGGCAGTGACATGGTTTGGGCGCCGACCA
CCTACCTTCAACAGCAGCAGGAGGCCGCTAATAGAGCCCACTTCGGCGTT
CGCACCCCACAGGTCGAAACCTCTATAGGTTATTCGAGTATGTCCATTGC
CATGAGTTCCAGATGGGCTACGAACTGTGCCCGACCTCAATCGGTCCACT
ACAAGTTGAGAAATGTTCTAAAATGTGTTAAAATAACAGCTCGTGGATCA
GCTGCCATTCTGGAGGGGACAATGACCCGAGGCACAGCAGCCAGTGCCCC
ACAAGGCAGTAAACACTTCCGGAGGACCGTGAAAGTTTCCCCCGTCGTTA
GTCATAGTACCTGGCCTGCGAATGACGGTGGAATTGATGTTGTACATGGA
CTACAGCAGAAGAAACCCGTTTTTTATTGTATGGGTCGTGGTTGAGGGTC
AGCTCCCACCTTGCCGTGACCCCATGACAAGGTCTCTATCGTGCATAGTG
CTGTTCTCTTTGGCTTCGATATGTACCAGGGCGTAGGAGCACTTGAAAGA
TAGCTGAGACCAAGGAGAAGCACAAACAAAAAAAACCTATAGAGGTTACG
AATTGGGCACAGTTCAAAACGTCGATACCGCAAAGCCTAAAATGCCCCTA
AAACGCTGTTATTGTACCGTTTTTACTATGCAGCCAGCGGAGCGAGGCCC
GTCTTGGACACCTGCACACCACTGGACACCGTCTCTTTGTTGGGCGCCCA
ACCAACCCAGGATGGTTGGCGTACGTCCGCAAGCATTGAGCAAGATCTAG
ACCTTGATGACAACGCTGTATCCAGCTCACTACGCAATGCATGTATCGGA
GTAAAAGGAAAACAACTCAGGAAGGACCTGTGGGACAGACTAGGGAAAAA
GGGCGTGTATCGACGCCTTGGTAGACAGAGACCACATAGGGTTTGGTGGC
TTGCGTTTTGTGGAGAAGGGAACCCTGCCCCAGATATTAGCCCTCCACGG
GACTTCGACGAAAGGGTTAGGATGGGATTGCTGGTTGCTGGAGAGGATGC
CGTAGATGAGGATCGCAGTGCCGCTGCTCAGGAGAAGGAGACGTACGCGT
CTGGCGGTATCGCCAGAGCACGAGATGAGGAAGGCTGCTGCTGCTGGGGA
GGAAGTGACCGATAAAGTTCGCCAAAGGTGCGGTCCTTCGAAATGGTCCA
TTTTTTGTGTATGATTGATAAGTCTGTCCTGCGTTGGCAATGGTACGTTG
ATGTTACGCTTTCGTGTCCGTAATTTGGTTAATTGTAGAGCTTTCCCTCT
AATAGCAAGTACTTGTAGTAGCGAGAGACAGCGAGAGACATTGCCGTATG
ATAGGGTTAGTAAAATACGACACCTGCTGAAGCGATTTAAAATCACAGAT
GCTCCACACCGAAGAGAGCATCACCATCAAACGATACGTTTACTCTCGAT
GCGTTTCCAACACTCCCTTTACGGCACCTACACATGTAATGAATCGTGCT
TTATAAATCGGTCCAGGGGGGTCCGTCGTATCTTACGGCACCCACGGAAC
ACACGCGTCACGCTGCCACACACACCACGCTAGAGATGCTGTATTCTGCT
GTACAGCTGTATTCAACTGTACTGCTGCTGCTTTACTGCTGCTGCTGTAC
TGCTGCTGCTGCTGCGCTGCTTATTCTGCTGTACTGCTGCTGCTGCTACT
TCGCTGCTGGTGCTGCTGTACTGCTGCTGCTGGGATGTGTAATGATGTAT
CATCTCGAAGTATCATACTCTCACTCGAGACGGAAAGCATAGCAGTGGCA
CCGTTACAACAACACAAGAACAGAAGTACAGCAAGACAAGAGCGTTGTGT
GTGCGGCAGGCTGCGGCGTGATGTTTAAATGCTGTGATGCGATATTTTAA
CACGAAAACATGTCATATTATCATCACCTACAGGCGTCAACAACAGTAGT
ACAGCCGACCGTGGGAACGGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig680:72858..74978-

>mRNA_P-littoralis_Contig680.22.1 ID=mRNA_P-littoralis_Contig680.22.1|Name=mRNA_P-littoralis_Contig680.22.1|organism=Pylaiella littoralis U1_48|type=CDS|length=543bp|location=Sequence derived from alignment at P-littoralis_Contig680:72858..74978- (Pylaiella littoralis U1_48)
ATGCGGCTGCCTGGGGTCACCGGAGCGATCTGGGCCAGCTTCATCATCGC
TGCCCCAGAAGCCAGCGGAGCGAGGCCCGTCTTGGACACCTGCACACCAC
TGGACACCGTCTCTTTGTTGGGCGCCCAACCAACCCAGGATGGTTGGCGT
ACGTCCGCAAGCATTGAGCAAGATCTAGACCTTGATGACAACGCTGTATC
CAGCTCACTACGCAATGCATGTATCGGAGTAAAAGGAAAACAACTCAGGA
AGGACCTGTGGGACAGACTAGGGAAAAAGGGCGTGTATCGACGCCTTGGT
AGACAGAGACCACATAGGGTTTGGTGGCTTGCGTTTTGTGGAGAAGGGAA
CCCTGCCCCAGATATTAGCCCTCCACGGGACTTCGACGAAAGGGTTAGGA
TGGGATTGCTGGTTGCTGGAGAGGATGCCGTAGATGAGGATCGCAGTGCC
GCTGCTCAGGAGAAGGAGACGTACGCGTCTGGCGGTATCGCCAGAGCACG
AGATGAGGAAGGCTGCTGCTGCTGGGGAGGAAGTGACCGATAA
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