mRNA_P-littoralis_Contig680.15.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig680.15.2
Unique NamemRNA_P-littoralis_Contig680.15.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig680.15.2 vs. uniprot
Match: A0A6H5K7R7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7R7_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 3.150e-21
Identity = 48/63 (76.19%), Postives = 51/63 (80.95%), Query Frame = 3 
Query:   84 HAYLSEECIPSGLKPVMRKAIRDNRDKHTRDKSASNFEVIRRCTNMWWNPKNSEGLQAELEAA 272
            HAYLSEECIP GLK  MR AIR NR KHTR KSASN +VIRRCTNMWWNP   + LQAEL+AA
Sbjct:  885 HAYLSEECIPIGLKKAMRTAIRANRVKHTRHKSASNVKVIRRCTNMWWNPILCKELQAELKAA 947
[Close]
BLAST of mRNA_P-littoralis_Contig680.15.2 vs. uniprot
Match: A0A6H5KIP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIP7_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 1.470e-20
Identity = 46/60 (76.67%), Postives = 49/60 (81.67%), Query Frame = 3 
Query:   84 HAYLSEECIPSGLKPVMRKAIRDNRDKHTRDKSASNFEVIRRCTNMWWNPKNSEGLQAEL 263
            HAYLSE  I + LK  MRKAIRDNR KHTR KSA+N EVIRRCTNMWWNP NS+ LQAEL
Sbjct:  778 HAYLSEHVITAELKKAMRKAIRDNRVKHTRHKSAANLEVIRRCTNMWWNPINSKFLQAEL 837
[Close]
BLAST of mRNA_P-littoralis_Contig680.15.2 vs. uniprot
Match: A0A6H5KUR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUR8_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 5.150e-20
Identity = 46/63 (73.02%), Postives = 50/63 (79.37%), Query Frame = 3 
Query:   84 HAYLSEECIPSGLKPVMRKAIRDNRDKHTRDKSASNFEVIRRCTNMWWNPKNSEGLQAELEAA 272
            HAYLSEECIP GLK  MR AIR NR KHTR KSASN +VIR+CTNMWWNP   +  QAEL+AA
Sbjct:  825 HAYLSEECIPVGLKKAMRTAIRANRVKHTRHKSASNVKVIRQCTNMWWNPVLCKESQAELKAA 887
[Close]
BLAST of mRNA_P-littoralis_Contig680.15.2 vs. uniprot
Match: A0A6H5JNB8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNB8_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 8.470e-19
Identity = 46/69 (66.67%), Postives = 53/69 (76.81%), Query Frame = 3 
Query:   84 HAYLSEECIPSGLKPVMRKAIRDNRDKHTRDKSASNFEVIRRCTNMWWNPKNSEGLQAELEAAAAAATG 290
            HAYLSE  +PSGLK  M+KAIR NR KH R  SASN +VI+RCT+MWWNP  S+ LQAEL+AA  AA G
Sbjct:  690 HAYLSEGSVPSGLKNAMQKAIRRNRLKHDRHLSASNVDVIQRCTHMWWNPIRSKKLQAELKAAEVAAKG 758
[Close]
BLAST of mRNA_P-littoralis_Contig680.15.2 vs. uniprot
Match: D8LFH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFH6_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 1.290e-15
Identity = 38/47 (80.85%), Postives = 39/47 (82.98%), Query Frame = 3 
Query:   84 HAYLSEECIPSGLKPVMRKAIRDNRDKHTRDKSASNFEVIRRCTNMW 224
            HAYLSEECIP GL   M+KAIR NR KHTR KSASN EVIRRCTNMW
Sbjct:  320 HAYLSEECIPCGLTETMQKAIRANRAKHTRHKSASNVEVIRRCTNMW 366
[Close]
BLAST of mRNA_P-littoralis_Contig680.15.2 vs. uniprot
Match: D7FZY3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY3_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 4.680e-15
Identity = 41/58 (70.69%), Postives = 45/58 (77.59%), Query Frame = 3 
Query:   84 HAYLSEECIPSGLKPVMRKAIRDNRDKHTRDKSASNFEVIRRCTNMWWNPKNSEGLQA 257
            HAYLSE  I + LK  MRKAIRDNR KHTR KSASN EVIRRCTNMW + K  +GLQ+
Sbjct:  406 HAYLSEHVITAELKKAMRKAIRDNRVKHTRHKSASNLEVIRRCTNMWRH-KTRDGLQS 462
[Close]
BLAST of mRNA_P-littoralis_Contig680.15.2 vs. uniprot
Match: A0A6H5JA48_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA48_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.140e-9
Identity = 32/41 (78.05%), Postives = 33/41 (80.49%), Query Frame = 3 
Query:   84 HAYLSEECIPSGLKPVMRKAIRDNRDKHTRDKSASNFEVIR 206
            HAYLSEECIP GLK  MR AIR NR KHTR KSASN +VIR
Sbjct:  320 HAYLSEECIPIGLKKAMRTAIRANRVKHTRHKSASNVKVIR 360
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig680.15.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5K7R7_9PHAE3.150e-2176.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIP7_9PHAE1.470e-2076.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUR8_9PHAE5.150e-2073.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNB8_9PHAE8.470e-1966.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFH6_ECTSI1.290e-1580.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FZY3_ECTSI4.680e-1570.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JA48_9PHAE1.140e-978.05Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig680contigP-littoralis_Contig680:43712..47097 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FZY3
Model size300
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Evalue1.32e-10
EggNOG OGs2BXB7@1|root,2S2EZ@2759|Eukaryota
Cds size168
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791416.1268013-UTR-P-littoralis_Contig680:43711..437941680791416.1268013-UTR-P-littoralis_Contig680:43711..43794Pylaiella littoralis U1_48UTRP-littoralis_Contig680 43712..43794 +
1680791416.1377556-UTR-P-littoralis_Contig680:46762..468101680791416.1377556-UTR-P-littoralis_Contig680:46762..46810Pylaiella littoralis U1_48UTRP-littoralis_Contig680 46763..46810 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791416.1498616-CDS-P-littoralis_Contig680:46810..469021680791416.1498616-CDS-P-littoralis_Contig680:46810..46902Pylaiella littoralis U1_48CDSP-littoralis_Contig680 46811..46902 +
1680791416.1681185-CDS-P-littoralis_Contig680:47021..470971680791416.1681185-CDS-P-littoralis_Contig680:47021..47097Pylaiella littoralis U1_48CDSP-littoralis_Contig680 47022..47097 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig680.15.2prot_P-littoralis_Contig680.15.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig680 46811..47097 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig680.15.2

>prot_P-littoralis_Contig680.15.2 ID=prot_P-littoralis_Contig680.15.2|Name=mRNA_P-littoralis_Contig680.15.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=56bp
MRKAIRDNRDKHTRDKSASNFEVIRRCTNMWWNPKNSEGLQAELEAAAAA
ATGEEQ
back to top

mRNA from alignment at P-littoralis_Contig680:43712..47097+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig680.15.2 ID=mRNA_P-littoralis_Contig680.15.2|Name=mRNA_P-littoralis_Contig680.15.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=3386bp|location=Sequence derived from alignment at P-littoralis_Contig680:43712..47097+ (Pylaiella littoralis U1_48)
ACACGCGACACACAACATGCCACGACCGAAGTGCAAGCGTTGTCCAGAAG
GCAGCAAACGAAGAGGTATATTTAGCAAAATAGGTGAGAAGGTGGTGGTG
TTGACCTCTTGTAATGATCATTTCCCGTGCTCTTCTCCCATTCTCGAGAG
ACCACACTTCACCTCTCTCTCTTTTGTGTGAGTTTTGAACACACTGGACA
CAACAGAAGACCTACATTCACAGCAGCACACGTACATTCAAGGAGGATAG
CAGTAGGCATGGAAATATGTGTGTCTCTCGTGTCTGATTTGTTGCTGTTG
ACCAGTCAGCACACAACAGCAGACCTACGTTCATGGAGGACAGTAGTAGG
CGTGGACATTTGCGTGTCTCGCAGCAGTGAGGATAGGATGCGGCAGCAGG
CAAGTAACCGCGAGGGATCCTTAACAAGCTGCTGTTGTTTGTGACCTTGT
GCCGACCACCCACTGCTGTTGTTTGTGCGCTTGTACCAACCACCCGCTGC
TGTAGTCGCAGCACATGCGCAGGGGAAAGGTGCTGGAAAAACAGGAGGTT
CTACCGAACTGAGTGGTAGACTTGATGCTGCCTGCGCATGTTAAACAGCA
GTATGCCGCGAGCATAGTGTACACCTTGCTCAACTATTACATAACCTGTT
TTGTTGCTGCTGACCAGCCAGCACAACAAAAGACCTACATTCACAGAGGG
CAGTAGGCATGGACATATGTGTTGTAACCTGTTATGTTCGCGTTGAAGCA
CCTAACAGCAGACCAACCCAAACTCGGATTTCTCTACTTACCTTTTCGCC
ATACACTATTTTTCCACGTAGGTACAGATGGAGAAAGACAGGGGGATGTG
TTGTGTGGAGGCCACAAGACAGAGGGCATGATCAACATAAACACCAAGAG
GTGTTCGTACAAAGGTTGTCACAAATATCCTTCATATGCCCTCGAGACAG
GTAACATTAGAGAACGTTGTGCAAAACACGCTGAGGATGGGATGGTTAGC
ACACACAGGACGTGCGCCACACAAGGGTGTGGAACCACGCCCAATTATGG
TCGCGACGGCTTTCGTACGCACTGTGTTAGCTGTTTCAGGAATAGTGTTG
ATGATGGACGCACACTTGAGTCAACGCCCGTGCCAGATGAGGAGGAAAAA
CATGTCATTGGTTGACGTGGCGAAAAAAGCACTTCTGGCAGATATGGCGA
AGAGGGAGAGAGGAAAAGAAATGCAGACTAATGCACTTGTGGTAGACACG
GTGGAAGGAAGAGCGGGAGTGCAGGGCGAGGGGGAAGGAGAAGCAGAGGC
AGCAGCGGCAGCAGCGGCAGCAGCGGGCGAGGTGGGGCGAGGACGCGCGC
TGGTGATAGACACATCTCCGGCGCCGGCACCAGCTGTGCCATCAGCAACC
GTAGCACCATCACCATCACCATCACCAGCACCAGCACCGGCGGCACTACA
AGGCGATGGAGGCATTTCGAGCAGCAGCGGTGGAAAAGGCAACAACTTCC
TCGAGACCGCCGACTGTTCGGGAACCGGAGCGGCGTCAAGCGAGGGTGGG
AGTGCGCTGCTGTGCATGGGATCCGCCAGTCTATTACAAGGGTTGGCGGC
AGTGGCGGTCAGAGTATCGGCCGGCGAACAGACAAAAGAACTGGCGGTCC
CGGCCGATACGCAGGCCGTGGTGAAAGAAGCGGCAGCAGCGGGCGTGGAG
GGCGAGGGGGAAGGGGTGGTCAACGCAACAGCGGGCGTTGGGGGCCAGGG
GGAAGGGGTGGTCAACACAGTAGGGGCAGCAGCGGACGTGGAGGGCGAGA
GGGGAGGGGTGGTCAACGCAGCAGCGGTAGCAGCGGTTGAGCAGAGTGAG
GGGGGAAGGGGTGGTCAACAGATCAGCGGTAGCAGCGGGTGAGCAGAGTG
AGGGGGAAGCGGTGGTCAACAGATCAGCGGGTGTAGAGGGCGAGGGGGAA
GGGGTAATCAACACAGCAGCAGCAGCAGCAGCGGACGTGGAGCGCGAGGG
GGAAGGAGTGGTCAACACAGCAGCAGCAGCAGCAGCAGCAGCAGCGGACG
TGGATGGCGAGGGGGAAGGAGTGGTCAACACAGCAGTAGCAGCAGCAGCG
GGCGTAGAGGGCAATGGGGAACGTGCGCTTGTGATAGACGCATCTCCGGC
GCCGGCACCAGCACCAACACCAGCACCGTCGGCATCACAAGGCGTCGGTG
GAGAAGGCACCCTCGGAGATGGCGCCAGCGGAGGGACAGAACATGCCAGC
GCGGAAAATCTAAACCTCCTCGCGCCCGCCGGCTGTTCGGGCACCGGATC
GGCGGCAAGCGGGGGAGGGCGTGGTGGTGAAAGCGGGAGCGGAGCCGAGA
ACGGAGGTGGTGACGAGGTGTTTGCGATTCCAAACCGCATTGTGTCTGGA
ACTTGACTGCATGTTACAAGAGGACACGGCTGAAAGAAAGACGGCTGAAA
ATGAATACAAGAGAGCATATGCGACCCGAGTCGCCGCACACCGCGGACAT
GCATGCTTTGCTCTCACCGGCACTCTCTTTTAAAAACGTCCACAGGAGGA
TGAATTTTTCGTGCGAAGGAGGTCGGACAGGAAGGCGGGGGTTTCGGGGG
TGGAAAAGGCCAGCGTGGTTCGCCTGCTCGACCTCATTGAGGCGGACGAC
CCAAGCGTACAGGTTCTGAAGCTTCACGATTATATCACAGCGGGCGTAAG
CGCGCCTGTCATAGATGCCGTGTTGGATGCGTTGATGCTTAACAACAACT
GTCAAGCGCTCTACATCCAGAACGTAGGCAATGCTTTTCGGGACGAACAG
CTTAGGAAGCTGGCCGAGGTGCTGCGCAGAGGTCACATCTGGTGCCTGAA
TGCGGGGGAGAACTCCGGGATCACGCCGTCTACGTGGTGGTGGTTCGTGA
AGGAAATAGAGGAAACAAACGTCACGGTAAGTTTAAGAAGCAGTGTGTAC
GATGTCGTCCATGTTGCCGGGCCCGGATGCTTTTATCATTGCTAAAATGA
ATTGACCACTGCCTTTCCGCTTTGCCCACCCTCATCGTTCGTACCGTACA
GCACGCTTATCTCAGCGAGGAATGCATCCCTAGCGGCCTCAAGCCGGTCA
TGCGGAAGGCCATCCGTGACAACAGAGACAAGCACACCCGCGACAAGTCG
GCTTCAAATTTCGAAGTAATACGGCGATGTACCAACATGTGGTGAGAGAA
TTGTATTACGTAGGCTTTCTGTGTCCGAGTTGTTGACAAATGCGCCGAGA
CAAGCAAGACTACTACTACACCGGCATCCTTTTTTGACCGCCCGTTGGCC
CCATTTTCAGGTGGAATCCCAAAAATTCCGAGGGACTACAGGCGGAGCTG
GAGGCGGCCGCAGCAGCAGCGACGGGTGAGGAGCAG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig680:43712..47097+

>mRNA_P-littoralis_Contig680.15.2 ID=mRNA_P-littoralis_Contig680.15.2|Name=mRNA_P-littoralis_Contig680.15.2|organism=Pylaiella littoralis U1_48|type=CDS|length=168bp|location=Sequence derived from alignment at P-littoralis_Contig680:43712..47097+ (Pylaiella littoralis U1_48)
ATGCGGAAGGCCATCCGTGACAACAGAGACAAGCACACCCGCGACAAGTC
GGCTTCAAATTTCGAAGTAATACGGCGATGTACCAACATGTGGTGGAATC
CCAAAAATTCCGAGGGACTACAGGCGGAGCTGGAGGCGGCCGCAGCAGCA
GCGACGGGTGAGGAGCAG
back to top