mRNA_P-littoralis_Contig680.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig680.5.1
Unique NamemRNA_P-littoralis_Contig680.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig680.5.1 vs. uniprot
Match: D7G1E0_ECTSI (EsV-1-12 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1E0_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 4.840e-32
Identity = 61/97 (62.89%), Postives = 76/97 (78.35%), Query Frame = 2 
Query:  164 LLIRKYCSRLIFKGKCAAERYMITRKYVDSSAQQEYRYDANTSYSADVAIFQNGAITCIVEVCLSHATTGELLKSRTACVGANNVCGTSAIELLNQQ 454
            LL+ KYCSRL+F G C A  + I R+YV+  A+QEYRYD   +Y+ADVAIFQNG I+ IVEVC SHATTG+ L+SRTACVG NNV   SA+E+L++Q
Sbjct:   71 LLVEKYCSRLVFIGVCIAGEHSIARQYVNCEAKQEYRYDTTNNYAADVAIFQNGVISAIVEVCASHATTGDSLESRTACVGVNNVWEISAVEILSRQ 167
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BLAST of mRNA_P-littoralis_Contig680.5.1 vs. uniprot
Match: A0A6H5JQD6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQD6_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 9.950e-12
Identity = 34/53 (64.15%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:    1 VVPSCSKAEGPFTCLECAGALVRKQGKIRVFHFAHHLLSPDGSGGGESALHKE 159
            VV SCSKAEGPFTCL C G LV  QGK+ V+HFAH   S   SG GESA H +
Sbjct:   32 VVSSCSKAEGPFTCLGCGGGLVLLQGKVNVYHFAHCQHSLGCSGWGESAQHNK 84
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BLAST of mRNA_P-littoralis_Contig680.5.1 vs. uniprot
Match: A0A6H5K8T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8T5_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 8.610e-6
Identity = 24/28 (85.71%), Postives = 25/28 (89.29%), Query Frame = 1 
Query:    1 VVPSCSKAEGPFTCLECAGALVRKQGKI 84
            VVPSCSKAEGPF CLECAGALV KQG +
Sbjct:   16 VVPSCSKAEGPFKCLECAGALVLKQGTL 43
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig680.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G1E0_ECTSI4.840e-3262.89EsV-1-12 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
A0A6H5JQD6_9PHAE9.950e-1264.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8T5_9PHAE8.610e-685.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig680contigP-littoralis_Contig680:5766..6228 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size463
Hectar predicted targeting categoryother localisation
Exons1
Cds size237
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791415.9224422-UTR-P-littoralis_Contig680:5765..59911680791415.9224422-UTR-P-littoralis_Contig680:5765..5991Pylaiella littoralis U1_48UTRP-littoralis_Contig680 5766..5991 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791415.9349184-CDS-P-littoralis_Contig680:5991..62281680791415.9349184-CDS-P-littoralis_Contig680:5991..6228Pylaiella littoralis U1_48CDSP-littoralis_Contig680 5992..6228 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig680.5.1prot_P-littoralis_Contig680.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig680 5992..6228 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig680.5.1

>prot_P-littoralis_Contig680.5.1 ID=prot_P-littoralis_Contig680.5.1|Name=mRNA_P-littoralis_Contig680.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=79bp
MITRKYVDSSAQQEYRYDANTSYSADVAIFQNGAITCIVEVCLSHATTGE
LLKSRTACVGANNVCGTSAIELLNQQAD*
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mRNA from alignment at P-littoralis_Contig680:5766..6228+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig680.5.1 ID=mRNA_P-littoralis_Contig680.5.1|Name=mRNA_P-littoralis_Contig680.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=463bp|location=Sequence derived from alignment at P-littoralis_Contig680:5766..6228+ (Pylaiella littoralis U1_48)
GTTGTGCCCTCCTGCTCCAAGGCCGAGGGCCCATTCACGTGCCTAGAATG
TGCCGGTGCGTTGGTACGGAAACAGGGCAAGATCAGAGTGTTCCACTTCG
CGCACCACCTCCTGTCGCCCGACGGTTCCGGAGGCGGAGAATCCGCCCTT
CACAAGGAGAAATTTGCTAATCAGGAAGTACTGTTCGCGCCTCATTTTCA
AGGGCAAGTGTGCTGCAGAAAGGTATATGATAACGCGTAAGTACGTTGAC
TCTTCCGCGCAACAGGAGTATCGCTACGATGCGAACACAAGCTACTCGGC
GGACGTAGCCATCTTCCAGAATGGTGCCATAACTTGTATCGTGGAGGTGT
GCTTATCTCACGCGACCACCGGCGAGTTACTAAAATCTCGCACGGCGTGC
GTCGGCGCGAACAATGTGTGTGGGACCTCGGCCATAGAACTCCTCAATCA
GCAGGCGGACTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig680:5766..6228+

>mRNA_P-littoralis_Contig680.5.1 ID=mRNA_P-littoralis_Contig680.5.1|Name=mRNA_P-littoralis_Contig680.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=237bp|location=Sequence derived from alignment at P-littoralis_Contig680:5766..6228+ (Pylaiella littoralis U1_48)
ATGATAACGCGTAAGTACGTTGACTCTTCCGCGCAACAGGAGTATCGCTA
CGATGCGAACACAAGCTACTCGGCGGACGTAGCCATCTTCCAGAATGGTG
CCATAACTTGTATCGTGGAGGTGTGCTTATCTCACGCGACCACCGGCGAG
TTACTAAAATCTCGCACGGCGTGCGTCGGCGCGAACAATGTGTGTGGGAC
CTCGGCCATAGAACTCCTCAATCAGCAGGCGGACTGA
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