mRNA_P-littoralis_Contig680.19.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig680.19.1
Unique NamemRNA_P-littoralis_Contig680.19.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig680.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig680contigP-littoralis_Contig680:45742..46314 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size562
Hectar predicted targeting categorymitochondrion
Exons2
Cds size462
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791415.776985-CDS-P-littoralis_Contig680:45741..459931680791415.776985-CDS-P-littoralis_Contig680:45741..45993Pylaiella littoralis U1_48CDSP-littoralis_Contig680 45742..45993 -
1680791415.7893937-CDS-P-littoralis_Contig680:46005..462151680791415.7893937-CDS-P-littoralis_Contig680:46005..46215Pylaiella littoralis U1_48CDSP-littoralis_Contig680 46006..46215 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791415.7996216-UTR-P-littoralis_Contig680:46215..463141680791415.7996216-UTR-P-littoralis_Contig680:46215..46314Pylaiella littoralis U1_48UTRP-littoralis_Contig680 46216..46314 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig680.19.1prot_P-littoralis_Contig680.19.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig680 45742..46215 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig680.19.1

>prot_P-littoralis_Contig680.19.1 ID=prot_P-littoralis_Contig680.19.1|Name=mRNA_P-littoralis_Contig680.19.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=154bp
MHVRGVRRLGSHMLSCIHFQPSFFQPCPLVTCSQVPDTMRFGIANTSSPP
PFSAPLPLSPPRPPPLAADPPAGARRFRFSALACSVPPLAPSPRVPSPPT
PCDADGAGVGAGAGAGDASITSARSPLPSTPAAAATAVLTTPSPSPSTSA
AAAA
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mRNA from alignment at P-littoralis_Contig680:45742..46314-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig680.19.1 ID=mRNA_P-littoralis_Contig680.19.1|Name=mRNA_P-littoralis_Contig680.19.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=573bp|location=Sequence derived from alignment at P-littoralis_Contig680:45742..46314- (Pylaiella littoralis U1_48)
CCACCCCCGAAACCCCCGCCTTCCTGTCCGACCTCCTTCGCACGAAAAAT
TCATCCTCCTGTGGACGTTTTTAAAAGAGAGTGCCGGTGAGAGCAAAGCA
TGCATGTCCGCGGTGTGCGGCGACTCGGGTCGCATATGCTCTCTTGTATT
CATTTTCAGCCGTCTTTCTTTCAGCCGTGTCCTCTTGTAACATGCAGTCA
AGTTCCAGACACAATGCGGTTTGGAATCGCAAACACCTCGTCACCACCTC
CGTTCTCGGCTCCGCTCCCGCTTTCACCACCACGCCCTCCCCCGCTTGCC
GCCGATCCGGTGCCCGAACAGCCGGCGGGCGCGAGGAGGTTTAGATTTTC
CGCGCTGGCATGTTCTGTCCCTCCGCTGGCGCCATCTCCGAGGGTGCCTT
CTCCACCGACGCCTTGTGATGCCGACGGTGCTGGTGTTGGTGCTGGTGCC
GGCGCCGGAGATGCGTCTATCACAAGCGCACGTTCCCCATTGCCCTCTAC
GCCCGCTGCTGCTGCTACTGCTGTGTTGACCACTCCTTCCCCCTCGCCAT
CCACGTCCGCTGCTGCTGCTGCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig680:45742..46314-

>mRNA_P-littoralis_Contig680.19.1 ID=mRNA_P-littoralis_Contig680.19.1|Name=mRNA_P-littoralis_Contig680.19.1|organism=Pylaiella littoralis U1_48|type=CDS|length=462bp|location=Sequence derived from alignment at P-littoralis_Contig680:45742..46314- (Pylaiella littoralis U1_48)
ATGCATGTCCGCGGTGTGCGGCGACTCGGGTCGCATATGCTCTCTTGTAT
TCATTTTCAGCCGTCTTTCTTTCAGCCGTGTCCTCTTGTAACATGCAGTC
AAGTTCCAGACACAATGCGGTTTGGAATCGCAAACACCTCGTCACCACCT
CCGTTCTCGGCTCCGCTCCCGCTTTCACCACCACGCCCTCCCCCGCTTGC
CGCCGATCCGCCGGCGGGCGCGAGGAGGTTTAGATTTTCCGCGCTGGCAT
GTTCTGTCCCTCCGCTGGCGCCATCTCCGAGGGTGCCTTCTCCACCGACG
CCTTGTGATGCCGACGGTGCTGGTGTTGGTGCTGGTGCCGGCGCCGGAGA
TGCGTCTATCACAAGCGCACGTTCCCCATTGCCCTCTACGCCCGCTGCTG
CTGCTACTGCTGTGTTGACCACTCCTTCCCCCTCGCCATCCACGTCCGCT
GCTGCTGCTGCT
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