mRNA_P-littoralis_Contig680.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig680.4.1
Unique NamemRNA_P-littoralis_Contig680.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig680.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig680contigP-littoralis_Contig680:3369..4202 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size326
Hectar predicted targeting categoryother localisation
Exons2
Cds size264
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791415.72083-CDS-P-littoralis_Contig680:3368..34521680791415.72083-CDS-P-littoralis_Contig680:3368..3452Pylaiella littoralis U1_48CDSP-littoralis_Contig680 3369..3452 -
1680791415.7317038-CDS-P-littoralis_Contig680:3961..41411680791415.7317038-CDS-P-littoralis_Contig680:3961..4141Pylaiella littoralis U1_48CDSP-littoralis_Contig680 3962..4141 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791415.7448132-UTR-P-littoralis_Contig680:4141..42021680791415.7448132-UTR-P-littoralis_Contig680:4141..4202Pylaiella littoralis U1_48UTRP-littoralis_Contig680 4142..4202 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig680.4.1prot_P-littoralis_Contig680.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig680 3369..4141 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig680.4.1

>prot_P-littoralis_Contig680.4.1 ID=prot_P-littoralis_Contig680.4.1|Name=mRNA_P-littoralis_Contig680.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=88bp
MLYWQQLQVGFSVGEEGLRARLKRGFREGRNAVSFSSSVAEIPQQATSWE
QELEQSAEGEMPSSCGHSSPRLPSSSTLARLSAPAEEG
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mRNA from alignment at P-littoralis_Contig680:3369..4202-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig680.4.1 ID=mRNA_P-littoralis_Contig680.4.1|Name=mRNA_P-littoralis_Contig680.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=834bp|location=Sequence derived from alignment at P-littoralis_Contig680:3369..4202- (Pylaiella littoralis U1_48)
TTGTCCCCGCTGTAGCTCTAGAGGCTGTATAGTGATTGAGTACTAACGTG
TGTTCAGACGAATGTTATACTGGCAGCAATTGCAAGTAGGGTTCTCCGTG
GGGGAGGAGGGGCTCCGCGCAAGATTGAAGAGAGGCTTTAGGGAAGGCAG
GAATGCGGTCTCCTTTAGCTCCAGCGTGGCCGAAATCCCGCAACAGGCTA
CCTCGTGGGAGCAGGAGCTCGAGCAGAGCGCCGAGGGGGAGGTGCGGGCT
ATTTGTTGAATATTTTGACCTACGTTGCGGGCTGTAGTTTTGGGCTTAGA
TTCGTTTTGCTGCGTTGTTGTGTTGTGGATAGGGTCGACAATTTGCATGA
GCGTTGCTGTGGTCAACATGAGCGGACAAGTCCTCTGCGTCCTGTGCATG
GTATCGTCGCAACCATTTTCCCGTCATATACCACACCCACCGTGTTGGTT
GTCTTATACTCCACGGGAAGAACGCACATTCGCCACCTCGAAGATGAAAC
TGACCATCGCCGTCAGAGGTCTGTAACGGAACAGGATGGTGGCCATCGCT
CAGGGAGGCAATTCGACCGTAGCAGTTCAAAATAGTTTTTGATGCAGGAT
ATATACACTATTTGTGTGCTTCCATGAAATGGTGTTTCTCATCTGTGCTT
CCATGATGTGGTGTGCCTCATCGAACGCTGTTTCGGCATATCAGGATGAA
ATAACCACATTCCCCCGCTGCGCAACCGCCTATCTTGATGCCGATGCTAG
ATGCCGAGCTCTTGTGGGCACAGCAGTCCACGATTGCCTTCGTCTTCAAC
TCTGGCACGACTTTCTGCTCCAGCCGAGGAGGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig680:3369..4202-

>mRNA_P-littoralis_Contig680.4.1 ID=mRNA_P-littoralis_Contig680.4.1|Name=mRNA_P-littoralis_Contig680.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=264bp|location=Sequence derived from alignment at P-littoralis_Contig680:3369..4202- (Pylaiella littoralis U1_48)
ATGTTATACTGGCAGCAATTGCAAGTAGGGTTCTCCGTGGGGGAGGAGGG
GCTCCGCGCAAGATTGAAGAGAGGCTTTAGGGAAGGCAGGAATGCGGTCT
CCTTTAGCTCCAGCGTGGCCGAAATCCCGCAACAGGCTACCTCGTGGGAG
CAGGAGCTCGAGCAGAGCGCCGAGGGGGAGATGCCGAGCTCTTGTGGGCA
CAGCAGTCCACGATTGCCTTCGTCTTCAACTCTGGCACGACTTTCTGCTC
CAGCCGAGGAGGGC
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