mRNA_P-littoralis_Contig68.100.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig68.100.2
Unique NamemRNA_P-littoralis_Contig68.100.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig68.100.2 vs. uniprot
Match: D7FY80_ECTSI (EsV-1-7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY80_ECTSI)

HSP 1 Score: 258 bits (658), Expect = 7.120e-76
Identity = 178/320 (55.62%), Postives = 192/320 (60.00%), Query Frame = 3 
Query:  381 GFLKAARGKTAATTTGPTPSKPRCRKVATRCRIAGCSGRPWFALPGSRVPKACKDHKEEGEVNIYTRVCEVDGXXXXXHYGMEGARARFCCTXXXXXXXXXXXXXXXXXXXXXXPSWAISKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKSAAVPATTPFSVPSTPPVAESTAADSQALEKGAVMGEGDASPLSASGSXXXXXXXXXXXTAEAPGPARYCAAHAPTGAVNVAASRCRHPGGCSVQPYFGREGGGQQAEFCARHRKRGMTDVRNPRCGAMGCTAQPCCGKKGDPRPLLCLRHAEPGMINFRSEGYR 1340
            G +  A  KTA       PSKPRCRKV  RCR  GC+GRPWFA PGSRVP+ACK HKEEGEVN+Y   CE D      HYG +G RARF                         PSWA  + XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKS AV  T                  SQ  E       G A+  +A+                 PGPARYCAAHAP GA NV ASRCRHPGGCSVQPYFGREGGGQQ +FCA HRK GMTDVRNPRC A+GCTAQP CG++GDPR           M+NFRS GYR
Sbjct:    2 GRMAVANAKTA-------PSKPRCRKVGARCRFEGCTGRPWFAQPGSRVPRACKAHKEEGEVNVYAPACEADACTTRPHYGADGGRARFXXKHKLDGMVDVLNKRCAKKGCRRQPSWARERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKSGAVATT-----------------KSQPSEDNTETTAGGAAATAAAH----------------PGPARYCAAHAPAGATNVTASRCRHPGGCSVQPYFGREGGGQQPKFCALHRKPGMTDVRNPRCTAVGCTAQPRCGREGDPRXXXXXXXXXXXMVNFRSAGYR 281
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig68.100.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FY80_ECTSI7.120e-7655.63EsV-1-7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY80... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig68contigP-littoralis_Contig68:528148..532514 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FHY3
Model size2435
Max annot lvl2880.D7FHY3|-
Hectar predicted targeting categoryother localisation
Exons6
Evalue0.000458
EggNOG OGs29ZCP@1|root,2RXW0@2759|Eukaryota
Ec32 ortholog descriptionEsV-1-7 domain protein
Ec32 orthologEc-24_003480.1
Cds size1110
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig68.100.2prot_P-littoralis_Contig68.100.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig68 528435..531476 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791414.458349-UTR-P-littoralis_Contig68:528147..5284341680791414.458349-UTR-P-littoralis_Contig68:528147..528434Pylaiella littoralis U1_48UTRP-littoralis_Contig68 528148..528434 +
1680791414.5625947-UTR-P-littoralis_Contig68:531476..5325141680791414.5625947-UTR-P-littoralis_Contig68:531476..532514Pylaiella littoralis U1_48UTRP-littoralis_Contig68 531477..532514 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791414.477348-CDS-P-littoralis_Contig68:528434..5285951680791414.477348-CDS-P-littoralis_Contig68:528434..528595Pylaiella littoralis U1_48CDSP-littoralis_Contig68 528435..528595 +
1680791414.4875782-CDS-P-littoralis_Contig68:529334..5295481680791414.4875782-CDS-P-littoralis_Contig68:529334..529548Pylaiella littoralis U1_48CDSP-littoralis_Contig68 529335..529548 +
1680791414.4992273-CDS-P-littoralis_Contig68:529787..5298921680791414.4992273-CDS-P-littoralis_Contig68:529787..529892Pylaiella littoralis U1_48CDSP-littoralis_Contig68 529788..529892 +
1680791414.511124-CDS-P-littoralis_Contig68:530153..5306051680791414.511124-CDS-P-littoralis_Contig68:530153..530605Pylaiella littoralis U1_48CDSP-littoralis_Contig68 530154..530605 +
1680791414.5252779-CDS-P-littoralis_Contig68:530883..5309881680791414.5252779-CDS-P-littoralis_Contig68:530883..530988Pylaiella littoralis U1_48CDSP-littoralis_Contig68 530884..530988 +
1680791414.549743-CDS-P-littoralis_Contig68:531403..5314761680791414.549743-CDS-P-littoralis_Contig68:531403..531476Pylaiella littoralis U1_48CDSP-littoralis_Contig68 531404..531476 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig68.100.2

>prot_P-littoralis_Contig68.100.2 ID=prot_P-littoralis_Contig68.100.2|Name=mRNA_P-littoralis_Contig68.100.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=370bp
MAEAPLQQMQQQQQRQQLQLWPAPLPFPVKSGFLKAARGKTAATTTGPTP
SKPRCRKVATRCRIAGCSGRPWFALPGSRVPKACKDHKEEGEVNIYTRVC
EVDGCGTRPHYGMEGARARFCCTHKLDGMVDVLNKRCATEGCRKQPSWAI
SKGTRALFCKEHKEGGMVDTKHRTCLHPGCTRFPSKSAAVPATTPFSVPS
TPPVAESTAADSQALEKGAVMGEGDASPLSASGSGSPAAAPATTPTAEAP
GPARYCAAHAPTGAVNVAASRCRHPGGCSVQPYFGREGGGQQAEFCARHR
KRGMTDVRNPRCGAMGCTAQPCCGKKGDPRPLLCLRHAEPGMINFRSEGY
RGSARQKRSKVLESPACKR*
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mRNA from alignment at P-littoralis_Contig68:528148..532514+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig68.100.2 ID=mRNA_P-littoralis_Contig68.100.2|Name=mRNA_P-littoralis_Contig68.100.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=4367bp|location=Sequence derived from alignment at P-littoralis_Contig68:528148..532514+ (Pylaiella littoralis U1_48)
CCGCCCGCCCCATCGCCAGCGCCACGGCGCCACCGCGAAGCAGCCAAAGC
AAAAAGAGCCCTCCTCAGATGTATCCTGGTCCCTGTTGGTCCTCTCGGCT
GGATCCTCTGCTGCTGCGCGCCCAACTTCAACTTCTGCTGTTTACGGAGC
ATCGTATCAAGTGAACGACATCTCTCGACACTGGGTACCTTTATGTAGCA
GGTTCGAAGGCTTTCAAGACTTTTGCTGTAGACAAACAACAAGATAGGTT
CGAAGGTTGCACGAGCAGCTGCGGAGGACATTAAGTTATGGCAGAAGCAC
CCCTACAGCAGATGCAGCAGCAGCAGCAGCGGCAGCAGCTGCAGCTTTGG
CCTGCACCACTGCCCTTTCCCGTCAAGAGTGGTTTCCTCAAGGCAGCACG
GGGGAAAACAGCGGCTACAACGACGGGACCCACACCCTCCAAACCGAGGT
GAGCAGCGCGTGAGTGCGCCTGCTGCTGTAGGCCGGCGTATCATACCGCT
AGCAGCAGCAACGAGCATACTGCTGGATATCATCATACCATCCCGTGAGA
TGGCCTCCGTTTCCTTCGCTGCTCTCCACCGAATCAAGATGCTGATTCGT
AGCCGAGGAAGAAGGGTAGTAGATATCGAATGACCTTGACCAACATGCTG
TACTTCACCAGCGTCCTTCGCGATGTTTCATCATATGTTGTTCTTGCATT
TTTTGTTTTTGCTTCTTCGAAGATGTTGGACGTACAAGCTAGTAATACTT
GTACGGCGGGTCGTGGAGGCCCTTCCCGGCACGGTACAGCGTACCTGCTG
TAAGCTTCGACGGTGGCGTTATCAGCCTCCGGCTCACCTGTATATCCGAG
CACCACTTCGTCCGCGTTTCTGCATACATAGACAGAAATGAGCGTGCTGG
CCCCCAAGTGTTGCGATTTTGTTATTTTTGGAAAGCCACAGCAGTATGTC
TACGCCATCTGCGTCAACCCTCGCGAGTGGTCAGCAGATCGACTCCAGCA
GGTGACAAGCTCTACGGTTTCAAATTAACGGCAAGGTGGGTCGCATAGTG
ATTATCACGCTCGAATCGCTCCCCTACAAGCCAAACCCCTGCGACCCAAA
CCCCTGCTCTGAAATCCTCACCCCTTCAACAAGCCGAATTGACACCATCA
ACTGCCGCGGGGATGCACGTCATTGTTGTATGAAAAGGTGTCGAAAAGTC
GCGACTCGCTGCCGGATCGCAGGCTGCAGCGGGCGCCCTTGGTTCGCCCT
GCCCGGCTCTCGAGTCCCCAAGGCCTGCAAGGACCACAAGGAAGAGGGAG
AGGTCAACATCTACACCCGCGTTTGTGAGGTGGACGGGTGTGGGACGAGG
CCGCACTATGGCATGGAGGGCGCGCGCGCGAGATTCTGCTGCACACACAA
GGTGTGTGTGTGTCTTTGGGTGTTATGTGTGTGTGTGTGCACATCGCGTA
CCGTACCTATCGGATCTGAAGGTTGATTGTGAACTGCTCGGGATGTCTTT
GACGATGTGGTCAAATATGCTTGGCTTTGATATTGGCCGGTTCACTACGA
CTGTAGCGGTCTTTCTCTCTCCGCCCCCCTACTCACTCACATTAATTCTT
CGCATACCCGCCTTCTTTACGGCGTGGCACGATCGTACAGCTTGATGGAA
TGGTGGATGTACTCAACAAGCGCTGTGCGACAGAAGGGTGCCGGAAGCAG
CCGAGCTGGGCAATAAGCAAAGGAACTCGGGCTCTTTTCTGCAAGGTAGG
CGATATACCAGTGAAATTCGTACTTCGTCCTGGTACTGTACCTTTTGGTA
AAGTTTTTTGTGTCACTCAACACTGCGGCTGTTGCTACAACTAGTAACGC
TATTCGTTCTGTTGCTGTCCTCGCTGATGGCACTTGTGGTTTTTCCCTCT
ACGTAGCTGTTGTTGTTGCTTTAAGGCAGAAGCACGTGCGCCAGGGTTGT
GGTAACCTTGCCTCTATACCTATACTTCGCCCGCCCACCCTCCCACCCCT
ATGAAGGAGCACAAAGAAGGTGGCATGGTGGACACAAAGCATAGGACATG
CTTGCATCCAGGCTGCACGCGGTTCCCCTCCAAGAGCGCTGCCGTCCCCG
CGACAACACCCTTCTCCGTTCCTTCTACGCCCCCGGTAGCAGAGTCCACT
GCGGCTGATTCACAAGCCTTGGAAAAGGGCGCAGTGATGGGGGAAGGAGA
TGCATCGCCACTATCGGCGTCAGGATCGGGGTCACCGGCAGCAGCACCAG
CAACAACGCCAACAGCTGAAGCTCCGGGGCCAGCGAGGTACTGCGCTGCA
CACGCGCCGACTGGGGCCGTGAACGTGGCGGCGAGCCGGTGCAGGCATCC
CGGAGGTTGTTCCGTGCAGCCGTACTTCGGGCGCGAGGGTGGGGGGCAGC
AGGCGGAGTTCTGCGCCCGGCACCGGAAAAGAGGCATGACAGACGTCAGG
AATCCAAGGTCCGCATGCATTTCAGCGCGATTTTTGCAACAACAGTTTAC
GTATGCAATGTACTTCAACATCACATTTGGTTTATTTCCTGTCGTACAGA
GTGCGGAGTCTTCAATAATCCTTGTCGTGTTGCCTTCTGAAATTCCGACA
TCCTTTTTTGACAGCATTGGTTTTTCATTTTTGGACACCACTCATGCCTG
CATCGTCTTTAGTGTCCTTCAGATGTCAAGTATTGCAAAGTTTGACGACT
TTCTCCTCGTAATGTGTCTTCATCCGTGATCTACAGGTGCGGCGCGATGG
GCTGCACGGCGCAGCCCTGCTGCGGGAAGAAAGGGGACCCTCGGCCTCTG
TTGTGTCTGCGCCACGCGGAGCCTGGCATGATCAACTTCAGGTATATGTA
AATGTTAGCATTGGACAAGGAAATATCCCTTGTGTAAGTTTAGTTATTGT
GTACAAAGTAAGCGTTTGGTTTGGATTGAAAGACCGGACTCGACGTGAAG
TATTTTCTACACTGAGCTGCTCCGCGGATTGGGGTCCGAACACCGAAGCT
TTCCCGATCGGGCATGTCAGTTGCTATGTTGGTGTCCTGGCTCTCTGGGG
GCAACTCAACAGCGATTGTTTGGTACGCCGGAGTTATCGCGTCCCCTGAA
GTTTCCGCCGACACATGAATGTGTCGATCAATAGTTCTGAAAGCTGACGG
AATAGACGGGCAAAGTTCGCAAAGAGGATGTTGTTCACATTTGTCTCCAT
GCCCTCTGCATTGTTTGGCGCGCCACGGGCGCCCTTCTCGCTGTCACCGT
TCACAGGTCGGAAGGCTACCGCGGGTCGGCGCGTCAAAAAAGGAGCAAGG
TTTTGGAGTCACCAGCTTGCAAGCGATGAGTGGATTCGCGAAACTCGGGG
GCGTGCGTTGCTCTAAACAAACAGCGCGCGAGTGCGGCGGGCGGGTACTC
TCTGGACACACCGGTAGTCGTTTACGACCAGGTTATTGAAAGAAGAAACG
TCACAACGTCGCTAGCCATTGCGCAAACTTTGCAGGGCAAGGAAAGATGA
AACGGACTATCCATTGACATTATTTTTTGTAATTGTCAGATAAATGTGCT
CTACGTGTCGCCGGCGATGATGATTTTTAACATATTACACGTGAAACGCT
TGCGAGCGGGAACCATATGAGTAGAGCAAGCGCGAGACCGACATGACTGC
ATTCCCGATTTTAGCAAGAATAACACGCCGTCACGCCTGGTTTTTCTGTG
TGAAGCATGTAGAGGGAGAACCTAACGTCAAGCTTCAGGTGGCTAGAGCA
AAGATAGGTTCTGCAGTATCGGGTTCGTGTTGTTCACACAGATACGTGAT
ATAATCGATTGGTCGATTCCATTTTTCTGCGGCGGTGATGATATGGTTTG
CTTTGATGAGGTTGTCAGGTCTTCAGTTCCTTGGTACGGAGCAGAGCAAG
AGGGTAGGAGTCGTTTCCCCTTTATTTGCGCGTGTTGACCGTATATTCAG
CGTGCGTGCGATCTGTTTCTTGCGTTTCCGTCAGGGTTGCCTTGCGCATT
GATAGTACAAGTAGATTTTATCAATGGGTGTTTAGTTTAAAGGCACCCAC
GTGCTGCTGACCGACGAATGCACTGGTACTCTTAACCTGTGTATGATATG
TGTTTCACTACGATTTCGTGGTCTCCACGAGCACCTTTTTGGTAAGAAGT
TCGACCGGAGGCAACATCAGGCAGTTCGGCGGGCTCGCGTACATCTTTCA
CCCCCGCCTGTTATCGCGCTCCCCTGTGTGTTTGCCTGGAGAGTTGCAGC
TGGATCTTGACAATGATCGGTTGTACTGCTGTATTCCTGTTGGCATGGAA
AAAAGTTATAGCTAGATTTTGACAATATTTTGGTTGTATTTCGGATCTAA
CGTTTTGAGATAGCTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig68:528148..532514+

>mRNA_P-littoralis_Contig68.100.2 ID=mRNA_P-littoralis_Contig68.100.2|Name=mRNA_P-littoralis_Contig68.100.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1110bp|location=Sequence derived from alignment at P-littoralis_Contig68:528148..532514+ (Pylaiella littoralis U1_48)
ATGGCAGAAGCACCCCTACAGCAGATGCAGCAGCAGCAGCAGCGGCAGCA
GCTGCAGCTTTGGCCTGCACCACTGCCCTTTCCCGTCAAGAGTGGTTTCC
TCAAGGCAGCACGGGGGAAAACAGCGGCTACAACGACGGGACCCACACCC
TCCAAACCGAGGTGTCGAAAAGTCGCGACTCGCTGCCGGATCGCAGGCTG
CAGCGGGCGCCCTTGGTTCGCCCTGCCCGGCTCTCGAGTCCCCAAGGCCT
GCAAGGACCACAAGGAAGAGGGAGAGGTCAACATCTACACCCGCGTTTGT
GAGGTGGACGGGTGTGGGACGAGGCCGCACTATGGCATGGAGGGCGCGCG
CGCGAGATTCTGCTGCACACACAAGCTTGATGGAATGGTGGATGTACTCA
ACAAGCGCTGTGCGACAGAAGGGTGCCGGAAGCAGCCGAGCTGGGCAATA
AGCAAAGGAACTCGGGCTCTTTTCTGCAAGGAGCACAAAGAAGGTGGCAT
GGTGGACACAAAGCATAGGACATGCTTGCATCCAGGCTGCACGCGGTTCC
CCTCCAAGAGCGCTGCCGTCCCCGCGACAACACCCTTCTCCGTTCCTTCT
ACGCCCCCGGTAGCAGAGTCCACTGCGGCTGATTCACAAGCCTTGGAAAA
GGGCGCAGTGATGGGGGAAGGAGATGCATCGCCACTATCGGCGTCAGGAT
CGGGGTCACCGGCAGCAGCACCAGCAACAACGCCAACAGCTGAAGCTCCG
GGGCCAGCGAGGTACTGCGCTGCACACGCGCCGACTGGGGCCGTGAACGT
GGCGGCGAGCCGGTGCAGGCATCCCGGAGGTTGTTCCGTGCAGCCGTACT
TCGGGCGCGAGGGTGGGGGGCAGCAGGCGGAGTTCTGCGCCCGGCACCGG
AAAAGAGGCATGACAGACGTCAGGAATCCAAGGTGCGGCGCGATGGGCTG
CACGGCGCAGCCCTGCTGCGGGAAGAAAGGGGACCCTCGGCCTCTGTTGT
GTCTGCGCCACGCGGAGCCTGGCATGATCAACTTCAGGTCGGAAGGCTAC
CGCGGGTCGGCGCGTCAAAAAAGGAGCAAGGTTTTGGAGTCACCAGCTTG
CAAGCGATGA
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