mRNA_P-littoralis_Contig68.71.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig68.71.1
Unique NamemRNA_P-littoralis_Contig68.71.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig68.71.1 vs. uniprot
Match: UPI0007F012D1 (uncharacterized protein LOC108203813 n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007F012D1)

HSP 1 Score: 214 bits (545), Expect = 2.230e-64
Identity = 124/273 (45.42%), Postives = 165/273 (60.44%), Query Frame = 1
Query:    1 TRKFDGMGNVVHVDEKRFYVCDVKQWFYARDDEPAPIRQVQHKNDITRVMFLRVVGQPRRNTSNNSEFSGKIRIYPSTVQERAQRNSRNRAAGTVVTKTVE-VTKARYKKMML--VIPDMKLRF---LRPPAAATGQRPPHLINDDPELRAAMAADGWDIRLINPPANSPDTNILDLSFFNSIQSLQDRTTPRSVDDLVKAVKEAWQKDPPAVLNRVWLSLQACLEQIMLAGGDNDYKSPHMRKGRLENAGTLPWQTKCKEEAWEKGVAALAE 801
            T  F  M NVVH+DEK FY+C     +Y   DEP P R+V+ K  IT+ MFL  V +PR        FSGKI I+P T  E A+RNS+NR AGT+VTK  E +TK + K  ++  VIP +  ++   +R          PH+  ++ E   A + DG+DIRLI  P NSPD N+LDL FF SIQ LQ    P ++++LV AVK+++ + P   LNRV+L+ Q C+++IM   GDNDYK PHM K RLE  GTLP Q +C+ +     VA L E
Sbjct:   93 TLLFSDMFNVVHIDEKWFYMCKTTTKYYLVHDEPEPTRRVKSKRFITKAMFLAAVARPRNG------FSGKIGIFPFTFIEPAKRNSKNRVAGTMVTKVDESITKEKVKSCLIEKVIPAIHAKWPQGMRTIIIQQDNAKPHIDCNNAEFMQAASKDGFDIRLICQPPNSPDLNVLDLGFFRSIQDLQHEKAPTTIEELVAAVKQSFDEYPVEKLNRVFLTQQTCMKEIMKFKGDNDYKIPHMGKDRLEREGTLPLQIRCESDLVNDVVAYLEE 359          
BLAST of mRNA_P-littoralis_Contig68.71.1 vs. uniprot
Match: A0A834FW95_RHOSS (Uncharacterized protein n=3 Tax=Rhododendron simsii TaxID=118357 RepID=A0A834FW95_RHOSS)

HSP 1 Score: 205 bits (521), Expect = 7.100e-60
Identity = 116/270 (42.96%), Postives = 163/270 (60.37%), Query Frame = 1
Query:   10 FDGMGNVVHVDEKRFYVCDVKQWFYARDDEPAPIRQVQHKNDITRVMFLRVVGQPRRNTSNNSEFSGKIRIYPSTVQERAQRNSRNRAAGTVVTKTVE-VTKARYKKMML--VIPDMKLRFLRPPAAAT-----GQRPPHLINDDPELRAAMAADGWDIRLINPPANSPDTNILDLSFFNSIQSLQDRTTPRSVDDLVKAVKEAWQKDPPAVLNRVWLSLQACLEQIMLAGGDNDYKSPHMRKGRLENAGTLPWQTKCKEEAWEKGVAAL 795
            F  M N VH+DEK FY+    + +Y   DE  P R  + K  IT+VMFL  V +PR   +   EFSGKI I+P TV+E A+R S+NR AGT+ TK V  VTK   +  ++  VIP ++ ++ +     T         PH+  +D E   A   +G+DIRL N PANSPD N+LDL FFN+IQSLQ +  PR++D LV AV++++ K P   L+ V+LSLQAC+ ++M   G N+YK PH++K +L   G LP+Q +C  +  E  +  L
Sbjct:  170 FKAMYNYVHIDEKWFYMTKESERYYVLPDEDQPHRTCKSKRFITKVMFLAAVARPRFGANGCEEFSGKIGIFPFTVKEPAKRTSKNRLAGTMETKAVAAVTKDVIRSYLIEKVIPAIQSKWHQSSVGETIYIQQDNARPHIKPNDVEFHEAATRNGFDIRLTNQPANSPDLNVLDLGFFNAIQSLQHQEAPRTIDQLVNAVEKSFDKLPSRELDSVFLSLQACMVEVMKVNGGNNYKLPHIKKPQLRRDGVLPFQLECGRDVMENVLIHL 439          
BLAST of mRNA_P-littoralis_Contig68.71.1 vs. uniprot
Match: A0A8I6WKB7_HORVV (Uncharacterized protein n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=A0A8I6WKB7_HORVV)

HSP 1 Score: 193 bits (490), Expect = 3.090e-57
Identity = 109/266 (40.98%), Postives = 157/266 (59.02%), Query Frame = 1
Query:   19 MGNVVHVDEKRFYVCDVKQWFYARDDEPAPIRQVQHKNDITRVMFLRVVGQPRRNTSNNSEFSGKIRIYPSTVQERAQRNSRNRAAGTVVTKTVEVTKARYKKMML--VIPDMKLRFLRPPAAAT-----GQRPPHLINDDPELRAAMAADGWDIRLINPPANSPDTNILDLSFFNSIQSLQDRTTPRSVDDLVKAVKEAWQKDPPAVLNRVWLSLQACLEQIMLAGGDNDYKSPHMRKGRLENAGTLPWQTKCKEEAWEKGVAAL 795
            M N+VH+DEK FY+    + +Y  D+E  P R +Q    I  VMFL  V +P+ ++  N  FSGKI I+P   +  AQR S NR  GT+ TK+++V +   ++ M+  ++P ++  +    A  T         PH++ +DPE   A+ + G DIRLI  PANSPD N LDL FFNS+QSL D  +PR++ DL+K V E ++      LNRV+LSLQAC+ +I+   G N YK PH+ K RLE+ G LP +  C +E +   +  L
Sbjct:    1 MHNIVHIDEKWFYMTKKNRNYYLLDEEEEPTRTIQSGASIGNVMFLTAVARPKWDSEGNVTFSGKIGIWPFVKEIPAQRKSDNRPRGTMETKSIKVNRQVMREFMIENLLPAIQSSWPDNDAGQTIFIKQDNAKPHILPNDPEFLVAVESTGLDIRLIQQPANSPDLNGLDLGFFNSLQSLTDCLSPRTLQDLIKGVLEEFENYEVYKLNRVFLSLQACMIEILNHAGGNGYKIPHVNKERLESLGLLPQRLTCPQEVYANALHNL 266          
BLAST of mRNA_P-littoralis_Contig68.71.1 vs. uniprot
Match: UPI0014933F33 (uncharacterized protein LOC117838342 n=2 Tax=Setaria viridis TaxID=4556 RepID=UPI0014933F33)

HSP 1 Score: 193 bits (490), Expect = 4.270e-57
Identity = 108/269 (40.15%), Postives = 154/269 (57.25%), Query Frame = 1
Query:   10 FDGMGNVVHVDEKRFYVCDVKQWFYARDDEPAPIRQVQHKNDITRVMFLRVVGQPRRNTSNNSEFSGKIRIYPSTVQERAQRNSRNRAAGTVVTKTVEVTKARYKKMML--VIPDMKLRFLRPPA-----AATGQRPPHLINDDPELRAAMAADGWDIRLINPPANSPDTNILDLSFFNSIQSLQDRTTPRSVDDLVKAVKEAWQKDPPAVLNRVWLSLQACLEQIMLAGGDNDYKSPHMRKGRLENAGTLPWQTKCKEEAWEKGVAAL 795
            F  M N++H DEK F      +  Y   DE  P R V++KN+I +VMF   + QPR +      F GK+  +P   +E AQR S NR  GT +TKT++V +   K  M+  ++  +++R+ +  A           P H+  DDP+ + A+A  G DIR++N PANSPD N LDL FF S+QS+ DRTT R++DD++  V   ++   P +LNRV+L+LQ C+ ++M   G N YK PHM K RLE AG LP    C  E  +K +  L
Sbjct:   13 FRHMKNIIHTDEKWFDGTRKNKKMYMAPDEEDPHRTVKNKNNIDKVMFYSGITQPRFDAEGRCYFDGKLGCWPFVREEPAQRRSDNRPRGTPITKTMKVDRQTMKSYMITKLLEAIRIRWPQEDANEIIWIQQDNSPSHIHADDPDFKTAVAHTGLDIRIMNQPANSPDMNCLDLGFFASLQSMTDRTTSRNMDDIIANVINEYEHYNPVILNRVFLTLQGCMIEVMKDNGGNRYKIPHMNKPRLEAAGMLPKYLSCDREIVQKAIELL 281          
BLAST of mRNA_P-littoralis_Contig68.71.1 vs. uniprot
Match: UPI000B906F28 (uncharacterized protein LOC110892967 n=1 Tax=Helianthus annuus TaxID=4232 RepID=UPI000B906F28)

HSP 1 Score: 191 bits (486), Expect = 1.610e-56
Identity = 115/276 (41.67%), Postives = 164/276 (59.42%), Query Frame = 1
Query:    1 TRKFDGMGNVVHVDEKRFYVCDVKQWFYARDDEPAPIRQVQHKNDITRVMFLRVVGQPRRNTSNNSEFSGKIRIYPSTVQERAQRNSRNRAAGTVVTKTV-EVTKARYKKMML--VIPDMKLRFLRPPAAATG-------QRPPHLINDDPELRAAMAADGWDIRLINPPANSPDTNILDLSFFNSIQSLQDRTTPRSVDDLVKAVKEAWQKDPPAVLNRVWLSLQACLEQIMLAGGDNDYKSPHMRKGRLENAGTLPWQTKCKEEAWEKGVAALA 798
            T  F  M NVVH+DEK FY+    + +Y    E  P+R  + K  IT+VMFL  V +PR +TS N  FSGKI I+P T  E A+R+S+NR AGT+ TK +  V K   +  ++  V+P ++ ++   P   TG          PH   DD +     + DG+DIRL   P NSPD N+LDL FF++IQSLQ++    S+D+LV AV+ +++K     LN V+L+LQAC+++IM   G N Y++PH+ KG+LE  G LP Q +C      + V+ LA
Sbjct:    8 TPSFYDMFNVVHIDEKWFYLSKPSKRYYLLPGEDEPLRTCKSKKFITKVMFLAAVARPRFDTSGNERFSGKIGIFPFTKLEPAKRSSKNRVAGTLETKPILSVIKEVTRSWLIDKVLPAIRDKW---PQGHTGPIFIQQDNAKPHNNIDDEQFIQEASRDGFDIRLRFQPPNSPDLNVLDLGFFHAIQSLQEQEVLGSIDELVHAVQTSFEKLSSHELNNVFLTLQACMKEIMKVHGSNHYQTPHIGKGKLERQGKLPLQIECDSNLINEVVSHLA 280          
BLAST of mRNA_P-littoralis_Contig68.71.1 vs. uniprot
Match: Q49KC8_PEA (Transposase n=2 Tax=Pisum sativum TaxID=3888 RepID=Q49KC8_PEA)

HSP 1 Score: 195 bits (495), Expect = 2.400e-56
Identity = 107/258 (41.47%), Postives = 152/258 (58.91%), Query Frame = 1
Query:   10 FDGMGNVVHVDEKRFYVCDVKQWFYARDDEPAPIRQVQHKNDITRVMFLRVVGQPRRNTSNNSEFSGKIRIYPSTVQERAQRNSRNRAAGTVVTKTVEVTKARYKKMML---VIPDMKLRFLRPPAAAT-----GQRPPHLINDDPELRAAMAADGWDIRLINPPANSPDTNILDLSFFNSIQSLQDRTTPRSVDDLVKAVKEAWQKDPPAVLNRVWLSLQACLEQIMLAGGDNDYKSPHMRKGRLENAGTLPWQTKC 759
            F  M N++H+DEK FY+    + +Y   DE  P R  + KN I +VMFL    +PR ++  N  FSGKI ++P    E A R+S NR AGT+VTK +        +  L   V+P ++ ++ R    +T          H+ +DDP  R A   DG+DIRL+  PANSPD NILDL FF++IQSLQ +  P+++D+L+ AV ++++  P    NR+++SLQ C+ +IM   G N YK PH+ K RLE  G LP Q KC
Sbjct:  140 FKSMHNIIHIDEKWFYMTKKSEKYYLLPDEDEPYRTCKSKNFIAKVMFLVAQTRPRFDSEENETFSGKIGVFPFVTHEPAIRSSINRVAGTMVTKAITTVNRDVVRSFLIDKVLPAIREKWPRDEFESTIFIQQDNARTHINHDDPLFREAATKDGFDIRLMCQPANSPDLNILDLGFFSAIQSLQYKEAPKTIDELISAVVKSFENFPSIKSNRIFVSLQLCMIEIMKEKGSNKYKIPHVNKERLERVGQLPIQIKC 397          
BLAST of mRNA_P-littoralis_Contig68.71.1 vs. uniprot
Match: A0A485KBU5_9STRA (Aste57867_2438 protein n=2 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KBU5_9STRA)

HSP 1 Score: 196 bits (499), Expect = 3.120e-56
Identity = 112/271 (41.33%), Postives = 159/271 (58.67%), Query Frame = 1
Query:   10 FDGMGNVVHVDEKRFYVCDVKQWFYARDDEPAPIRQVQHKNDITRVMFLRVVGQPRRNTSNNSEFSGKIRIYPSTVQERAQRNSRNRAAGTVVTKTVEVTKARYKKMML--VIPDMKLRFLRPPAAATG-------QRPPHLINDDPELRAAMAADGWDIRLINPPANSPDTNILDLSFFNSIQSLQDRTTPRSVDDLVKAVKEAWQKDPPAVLNRVWLSLQACLEQIMLAGGDNDYKSPHMRKGRLENAGTLPWQTKCKEEAWEKGVAAL 795
            FD M + VH+DEK FY+  VK+  Y    E  P R  Q K  IT+VMFL  V +PR N + +  F GKI  +  T    AQRNSRNR +GT+VT  V V++  Y+ M++  VIP +K ++   P A T           PH+   D  + AA  ADGWDI +   P NSPD N+LDL FF +IQSLQ+RT  R++D+L+ A   AW     + LN  +L+LQ+C+ + + +GG+N+YK PHM+K  +   G LP   +C  + ++ G+A +
Sbjct:  157 FDDMMSYVHIDEKWFYMTRVKRTLYLLPGEEPPHRTTQSKRFITKVMFLSAVARPRWNYNKDEWFDGKIGTWHFTEVVPAQRNSRNRPSGTLVTVPVNVSRDTYRDMLVNNVIPAIKNKW---PDARTSCIVIQQDNARPHVTTTDKGVLAACKADGWDIAMECQPPNSPDLNVLDLGFFRAIQSLQERTRCRTIDELIAATLSAWVSVDASTLNANFLTLQSCMVETIRSGGNNNYKVPHMKKAPMMKQGRLPDAIECPRDVFDHGLALM 424          
BLAST of mRNA_P-littoralis_Contig68.71.1 vs. uniprot
Match: UPI000CD873B3 (uncharacterized protein LOC111883545 n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI000CD873B3)

HSP 1 Score: 195 bits (495), Expect = 4.060e-56
Identity = 113/270 (41.85%), Postives = 161/270 (59.63%), Query Frame = 1
Query:   10 FDGMGNVVHVDEKRFYVCDVKQWFYARDDEPAPIRQVQHKNDITRVMFLRVVGQPRRNTSNNSEFSGKIRIYPSTVQERAQRNSRNRAAGTVVTKTV-EVTKARYKKMML--VIPDMKLRFLR----PPAAATGQRPPHLINDDPELRAAMAADGWDIRLINPPANSPDTNILDLSFFNSIQSLQDRTTPRSVDDLVKAVKEAWQKDPPAVLNRVWLSLQACLEQIMLAGGDNDYKSPHMRKGRLENAGTLPWQTKCKEEAWEKGVAALA 798
            F  M NV+H+DEK FY+    + +Y    E  P+R  Q K  IT+VMFL  V +PR + S N  FSGKI IYP T  E A+R+S+NR AGT+ TK +  VTK   +  ++  V+PD++ ++ R    P         PH+  +D E   A + DG+DIRL   P+NSPD N+LDL FF +IQSLQ++    ++D+LV AV+ A++K     LN V+L+LQ C+ +I+   G N+Y+ PH+ K RLE  G LP +  C E    + +  LA
Sbjct:  164 FHDMFNVIHIDEKWFYMSKPSRRYYLVPGEDEPLRTCQSKKFITKVMFLAAVARPRFDASGNEVFSGKIGIYPFTRLEPAKRSSKNRVAGTLETKPILSVTKEVTRSWLIEKVLPDIRAKWPRSHVGPIFIQQDNAKPHIDVNDNEFLEAASQDGFDIRLNFQPSNSPDLNVLDLGFFRAIQSLQEQEALGTIDELVHAVQTAFEKMQSQQLNNVFLTLQTCMREIIKVQGGNNYQIPHIGKNRLEREGNLPLRIGCDENLINEALLHLA 433          
BLAST of mRNA_P-littoralis_Contig68.71.1 vs. uniprot
Match: UPI001CB9A663 (uncharacterized protein LOC122597563 n=3 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB9A663)

HSP 1 Score: 194 bits (493), Expect = 4.430e-56
Identity = 107/257 (41.63%), Postives = 159/257 (61.87%), Query Frame = 1
Query:   10 FDGMGNVVHVDEKRFYVCDVKQWFYARDDEPAPIRQVQHKNDITRVMFLRVVGQPRRNTSNNSEFSGKIRIYPSTVQERAQRNSRNRAAGTVVTKTV-EVTKARYKKMML--VIPDMKLRFLR----PPAAATGQRPPHLINDDPELRAAMAADGWDIRLINPPANSPDTNILDLSFFNSIQSLQDRTTPRSVDDLVKAVKEAWQKDPPAVLNRVWLSLQACLEQIMLAGGDNDYKSPHMRKGRLENAGTLPWQTKC 759
            F  + NV+H+DEK FY+    + +Y   +E  P+R  + K  IT+VMFL  V +PR + S N  FSGKI I+P T  E A+R+S+NR AGT++TK +  VTK   +  ++  V+P ++ ++ R    P         PH+  +D E     + DG+DIRL   P NSPD N+LDL FF +IQSLQ++    S+D+LV AVK ++++ P   LN V+L+LQ C+++IM   G N+Y++PH+ KG+LE  G LP   +C
Sbjct:  136 FHDIFNVIHIDEKWFYMSKPSKRYYLVPNEIEPLRTCKSKKFITKVMFLAAVARPRFDASGNEVFSGKIGIFPFTTLEPAKRSSKNRVAGTLITKPILSVTKEVTRSWLIEKVLPAIRSKWPRDHTGPIFIQQDNAKPHIDVNDAEFNQEASKDGFDIRLCFQPPNSPDLNVLDLGFFRAIQSLQEQEVLGSIDELVSAVKTSFERMPSNELNNVFLTLQTCMKEIMKVRGGNNYQTPHIGKGKLERQGKLPLTIEC 392          
BLAST of mRNA_P-littoralis_Contig68.71.1 vs. uniprot
Match: UPI0006AB3C27 (uncharacterized protein LOC106393291 n=3 Tax=Brassica TaxID=3705 RepID=UPI0006AB3C27)

HSP 1 Score: 194 bits (493), Expect = 6.060e-56
Identity = 113/272 (41.54%), Postives = 158/272 (58.09%), Query Frame = 1
Query:    7 KFDGMGNVVHVDEKRFYVCDVKQWFYARDDEPAPIRQVQHKNDITRVMFLRVVGQPRRNTSNNSEFSGKIRIYPSTVQERAQRNSRNRAAGTVVTKTVEVTKARYKKMMLVIPDMKLRFLRPPAAATGQR--------PPHLINDDPELRAAMAADGWDIRLINPPANSPDTNILDLSFFNSIQSLQDRTTPRSVDDLVKAVKEAWQKDPPAVLNRVWLSLQACLEQIMLAGGDNDYKSPHMRKGRLENAGTLPWQTKCKEEAWEKGVAALA 798
            KF  M NVVH+DEK FY+    Q +Y    E  P+R  Q KN I++VMFL V+ +PR +   N  FSGKI I+P    ++AQR S NR AGT+  K +   K    K  L+   +   + R PA   G+           H+  +D E + A    G DI+L+  P NSPD NILDL +F +IQ+LQ    P++V+DLV AV+EA+ + PP ++NRV+L+LQ+C+ +IM  GG N+YK PH++K  LE  G LP Q  C     E+ +  +A
Sbjct:  150 KFVDMYNVVHIDEKWFYMTKKTQTYYLLPSEEDPLRTCQSKNYISKVMFLAVMARPRYDREVNETFSGKIGIFPFVTLQKAQRRSCNREAGTMELKPMVSIKRVDIKRFLIEKVLPRIYERWPAEDFGKTIFIQQDNAKTHVTVNDEEFQVAALQHGLDIQLMCQPPNSPDLNILDLGYFRAIQALQHHVCPKTVEDLVTAVEEAYDEYPPNLVNRVFLTLQSCMIEIMKIGGGNNYKIPHLKKDTLEREGLLPVQMDCDPNLVEEAMNYVA 421          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig68.71.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0007F012D12.230e-6445.42uncharacterized protein LOC108203813 n=1 Tax=Daucu... [more]
A0A834FW95_RHOSS7.100e-6042.96Uncharacterized protein n=3 Tax=Rhododendron simsi... [more]
A0A8I6WKB7_HORVV3.090e-5740.98Uncharacterized protein n=1 Tax=Hordeum vulgare su... [more]
UPI0014933F334.270e-5740.15uncharacterized protein LOC117838342 n=2 Tax=Setar... [more]
UPI000B906F281.610e-5641.67uncharacterized protein LOC110892967 n=1 Tax=Helia... [more]
Q49KC8_PEA2.400e-5641.47Transposase n=2 Tax=Pisum sativum TaxID=3888 RepID... [more]
A0A485KBU5_9STRA3.120e-5641.33Aste57867_2438 protein n=2 Tax=Aphanomyces stellat... [more]
UPI000CD873B34.060e-5641.85uncharacterized protein LOC111883545 n=1 Tax=Lactu... [more]
UPI001CB9A6634.430e-5641.63uncharacterized protein LOC122597563 n=3 Tax=Erige... [more]
UPI0006AB3C276.060e-5641.54uncharacterized protein LOC106393291 n=3 Tax=Brass... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig68contigP-littoralis_Contig68:407466..408297 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog38727.Pavir.J15216.1.p
Model size801
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue1e-53
EggNOG OGs2CMKC@1|root,2QQNW@2759|Eukaryota,37TMG@33090|Viridiplantae,3GG9M@35493|Streptophyta,3M2XW@4447|Liliopsida,3IN2T@38820|Poales
Cds size783
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791413.4590416-CDS-P-littoralis_Contig68:407465..4078811680791413.4590416-CDS-P-littoralis_Contig68:407465..407881Pylaiella littoralis U1_48CDSP-littoralis_Contig68 407466..407881 -
1680791413.4729795-CDS-P-littoralis_Contig68:407912..4082791680791413.4729795-CDS-P-littoralis_Contig68:407912..408279Pylaiella littoralis U1_48CDSP-littoralis_Contig68 407913..408279 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791413.487812-UTR-P-littoralis_Contig68:408279..4082971680791413.487812-UTR-P-littoralis_Contig68:408279..408297Pylaiella littoralis U1_48UTRP-littoralis_Contig68 408280..408297 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig68.71.1prot_P-littoralis_Contig68.71.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig68 407466..408279 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig68.71.1

>prot_P-littoralis_Contig68.71.1 ID=prot_P-littoralis_Contig68.71.1|Name=mRNA_P-littoralis_Contig68.71.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=261bp
MGNVVHVDEKRFYVCDVKQWFYARDDEPAPIRQVQHKNDITRVMFLRVVG
QPRRNTSNNSEFSGKIRIYPSTVQERAQRNSRNRAAGTVVTKTVEVTKAR
YKKMMLVIPDMKLRFLRPPAAATGQRPPHLINDDPELRAAMAADGWDIRL
INPPANSPDTNILDLSFFNSIQSLQDRTTPRSVDDLVKAVKEAWQKDPPA
VLNRVWLSLQACLEQIMLAGGDNDYKSPHMRKGRLENAGTLPWQTKCKEE
AWEKGVAALAE
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mRNA from alignment at P-littoralis_Contig68:407466..408297-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig68.71.1 ID=mRNA_P-littoralis_Contig68.71.1|Name=mRNA_P-littoralis_Contig68.71.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=832bp|location=Sequence derived from alignment at P-littoralis_Contig68:407466..408297- (Pylaiella littoralis U1_48)
ACTCGCAAGTTCGACGGGATGGGGAACGTGGTCCATGTCGACGAGAAGCG GTTTTATGTGTGCGACGTGAAGCAGTGGTTCTACGCGCGTGACGACGAGC CCGCCCCGATTCGGCAAGTTCAACACAAGAATGACATCACGAGGGTGATG TTTCTGAGAGTTGTTGGGCAGCCGAGGCGCAACACCTCCAACAACTCGGA ATTCAGCGGGAAGATCAGAATCTACCCGTCCACCGTTCAAGAGCGAGCCC AGAGAAACAGCCGAAACAGGGCTGCCGGAACAGTGGTGACGAAGACAGTT GAGGTAACGAAGGCAAGGTACAAGAAGATGATGCTTGTCATCCCGGACAT GAAGCTCCGGTTCCTCCGCCCTCCGGCCGCCGCCAGTCCTGCCGACAAGA TTGTATGTAGGTCCAGCAGGGCAACGCCCGCCTCATCTCATCAACGATGA CCCAGAACTGAGGGCTGCAATGGCGGCGGACGGGTGGGACATCCGGCTGA TCAATCCGCCCGCCAACAGCCCGGACACAAACATCCTTGATTTGAGTTTT TTTAACTCGATCCAGTCCCTTCAGGACCGCACAACCCCGAGGAGCGTGGA TGACCTGGTCAAGGCCGTCAAGGAGGCATGGCAAAAGGATCCGCCGGCCG TACTCAACCGGGTATGGCTGAGCCTGCAGGCGTGCCTGGAGCAAATTATG CTTGCGGGTGGTGACAACGATTACAAGTCGCCGCATATGCGCAAGGGCAG GCTCGAAAACGCGGGTACGCTTCCCTGGCAGACTAAATGCAAGGAGGAGG CGTGGGAGAAGGGTGTTGCGGCGCTTGCAGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig68:407466..408297-

>mRNA_P-littoralis_Contig68.71.1 ID=mRNA_P-littoralis_Contig68.71.1|Name=mRNA_P-littoralis_Contig68.71.1|organism=Pylaiella littoralis U1_48|type=CDS|length=783bp|location=Sequence derived from alignment at P-littoralis_Contig68:407466..408297- (Pylaiella littoralis U1_48)
ATGGGGAACGTGGTCCATGTCGACGAGAAGCGGTTTTATGTGTGCGACGT
GAAGCAGTGGTTCTACGCGCGTGACGACGAGCCCGCCCCGATTCGGCAAG
TTCAACACAAGAATGACATCACGAGGGTGATGTTTCTGAGAGTTGTTGGG
CAGCCGAGGCGCAACACCTCCAACAACTCGGAATTCAGCGGGAAGATCAG
AATCTACCCGTCCACCGTTCAAGAGCGAGCCCAGAGAAACAGCCGAAACA
GGGCTGCCGGAACAGTGGTGACGAAGACAGTTGAGGTAACGAAGGCAAGG
TACAAGAAGATGATGCTTGTCATCCCGGACATGAAGCTCCGGTTCCTCCG
CCCTCCGGCCGCCGCCACAGGGCAACGCCCGCCTCATCTCATCAACGATG
ACCCAGAACTGAGGGCTGCAATGGCGGCGGACGGGTGGGACATCCGGCTG
ATCAATCCGCCCGCCAACAGCCCGGACACAAACATCCTTGATTTGAGTTT
TTTTAACTCGATCCAGTCCCTTCAGGACCGCACAACCCCGAGGAGCGTGG
ATGACCTGGTCAAGGCCGTCAAGGAGGCATGGCAAAAGGATCCGCCGGCC
GTACTCAACCGGGTATGGCTGAGCCTGCAGGCGTGCCTGGAGCAAATTAT
GCTTGCGGGTGGTGACAACGATTACAAGTCGCCGCATATGCGCAAGGGCA
GGCTCGAAAACGCGGGTACGCTTCCCTGGCAGACTAAATGCAAGGAGGAG
GCGTGGGAGAAGGGTGTTGCGGCGCTTGCAGAG
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