mRNA_P-littoralis_Contig68.69.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig68.69.1
Unique NamemRNA_P-littoralis_Contig68.69.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig68.69.1 vs. uniprot
Match: A0A6H5K8D7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D7_9PHAE)

HSP 1 Score: 257 bits (656), Expect = 3.790e-76
Identity = 148/249 (59.44%), Postives = 171/249 (68.67%), Query Frame = 2 
Query:  137 VVALLLFSSTGSAKKAKRWTYPRPQWPVPQHRMDPEPCRMFLWNAVSAERFCECTRLLKFTADRTLWEDSHQQLWLRIPFTSPLLRLFPCQQHSLTRCAKCGHDYRAHVERTRQRRKGRPYDQHVKQQXXQSSRRGAAVFSKDYRGASVFSDKKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAESFVGWRRRLAVLAEAQRATLLQLSGHHVTSAQARAGFKAQHDRRVQAEAAE 883
            ++ +LL    GSAKK+KRWTYPRPQWPVP HRMD  PCR FLW+  SA RFCECTR L+  AD+TLWEDSH QLWLR+PF+SPLLRLFPCQQHSLTRCAKCGH+YRAHVE T +RRK   YD+ ++    +   RGA    +DYRG SVFSD+K+                       XXXXXXXXXXX      +     GWRRRLAVLAEAQRA LLQ SG  VTS  AR+ FKA HD +V+A AA+
Sbjct:   13 LIVILLLCCNGSAKKSKRWTYPRPQWPVPGHRMDAVPCRWFLWDVASAARFCECTRHLESVADQTLWEDSHGQLWLRVPFSSPLLRLFPCQQHSLTRCAKCGHEYRAHVEHTLKRRKDGDYDKFIRDHARRVGGRGA----QDYRGGSVFSDQKRTSRERVDASVGSLGSSSGNGNNSXXXXXXXXXXXGGIGNGS-----GWRRRLAVLAEAQRAALLQTSGIAVTSETARSAFKAVHDEKVKAGAAQ 252
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig68.69.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K8D7_9PHAE3.790e-7659.44Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig68contigP-littoralis_Contig68:398441..403191 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2032
Hectar predicted targeting categorysignal peptide
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-24_003510.1
Cds size1104
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig68.69.1prot_P-littoralis_Contig68.69.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig68 399266..403088 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791413.3613129-UTR-P-littoralis_Contig68:398440..3992651680791413.3613129-UTR-P-littoralis_Contig68:398440..399265Pylaiella littoralis U1_48UTRP-littoralis_Contig68 398441..399265 -
1680791413.4315743-UTR-P-littoralis_Contig68:403088..4031911680791413.4315743-UTR-P-littoralis_Contig68:403088..403191Pylaiella littoralis U1_48UTRP-littoralis_Contig68 403089..403191 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791413.3801136-CDS-P-littoralis_Contig68:399265..3999671680791413.3801136-CDS-P-littoralis_Contig68:399265..399967Pylaiella littoralis U1_48CDSP-littoralis_Contig68 399266..399967 -
1680791413.395849-CDS-P-littoralis_Contig68:400575..4007391680791413.395849-CDS-P-littoralis_Contig68:400575..400739Pylaiella littoralis U1_48CDSP-littoralis_Contig68 400576..400739 -
1680791413.4074478-CDS-P-littoralis_Contig68:401659..4017961680791413.4074478-CDS-P-littoralis_Contig68:401659..401796Pylaiella littoralis U1_48CDSP-littoralis_Contig68 401660..401796 -
1680791413.4174347-CDS-P-littoralis_Contig68:402987..4030881680791413.4174347-CDS-P-littoralis_Contig68:402987..403088Pylaiella littoralis U1_48CDSP-littoralis_Contig68 402988..403088 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig68.69.1

>prot_P-littoralis_Contig68.69.1 ID=prot_P-littoralis_Contig68.69.1|Name=mRNA_P-littoralis_Contig68.69.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=368bp
MIDRLKTAFGVVVALLLFSSTGSAKKAKRWTYPRPQWPVPQHRMDPEPCR
MFLWNAVSAERFCECTRLLKFTADRTLWEDSHQQLWLRIPFTSPLLRLFP
CQQHSLTRCAKCGHDYRAHVERTRQRRKGRPYDQHVKQQQQQSSRRGAAV
FSKDYRGASVFSDKKKKSKPKRRGAAPAASITSAIASASGAGSGSYGSSG
ADDDDDAAESFVGWRRRLAVLAEAQRATLLQLSGHHVTSAQARAGFKAQH
DRRVQAEAAEEKRRRRNRSSSSSSSSIERWVVGRKDYGSNRRLGGDRRQR
RRGRRAGDGGGGGGGGSSGGVGVANGSGVSSRGGDGRGRSSRGRGYTEDE
TAQRNLRAFDPMEYIQI*
back to top

mRNA from alignment at P-littoralis_Contig68:398441..403191-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig68.69.1 ID=mRNA_P-littoralis_Contig68.69.1|Name=mRNA_P-littoralis_Contig68.69.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4751bp|location=Sequence derived from alignment at P-littoralis_Contig68:398441..403191- (Pylaiella littoralis U1_48)
CTGGTATTAGCTGTCCTGTGCTGCAGTCCAGTGTTGCTTTGCTGCTGTGC
GACAGGTGTGCGCCAGTGACAGCAATCTACGGCAGCCGTCGAGGCTGGGG
ACGATGATCGACAGGTTAAAGACCGCGTTCGGCGTGGTGGTGGCTCTCCT
ACTCTTCTCGAGTACTGGCTCGGCCAAGAAAGCGAAGCGATGGACTTACC
CCAGGTCTGCTATACTTGCTGCAAGTTTGATTTTGCATCGTTCTGGCAGA
TACAGCTAGCCGTAGCTGCACAAGCATGTGTCATAGCTCTTTCGAACAGG
CCTACCTGTTGTCGGTAATATAGGGACAGCAAGCATACCCCTCTCTGTAA
TTCTACAGTTTACTGGCAAGCCGGTCGAGGTGCTACTACAGCAGCACTAC
TTCTGTTGCTTTACTGTGTAAGTCGACTTTTGTTTCCTGGTAATGCTGTA
TGGTACTGCTGTACGTGTGTTCTTGGAGCGGGAAAGAGTCGAAGTGTAGG
GTTGTTTGGAGAGGCGGGTCTATCTCGAGGGAGTCCTGCCGGTCACCATT
CTAGCGGTCAGTGGCGGATCCTGCCGATTCAGCGTTGTATGTTAAGCGCC
GGAACATCTGTAATTTTGGGTGCCCTTTAGTGAGAGCGGCAAGTGACATG
TGCGGGAGAAATGACCGGTAGAAGGGTCTCATTTCCCGACAAAACAGCAG
TGAACATTTCCAAATCAGGGTACATAAAGTACAATTGGGGGAACTAGCTG
CCGCGGGGCATACCCCGCCGTTGTCCCGGCATTAGAGGGTGAAGGTGAGC
GTCGACTGATCATGACTCATTTTCACGCTGGTAAAGTGTGTACCCCGCCG
CGTCGTTTCACGACCACGGTAAGCACCTTGTTCTGGCGTGTTCCCTTTTC
TCTCTGTTTTACGAGCACATGTCGAAACCCCGGAGAGAAAAAGCAAAAAT
GAAGTAAAATTATCGTATCACATGAATAGTGTACTGAAACACGCCGAGAA
GTTTGCCGTATGATAAGCCCTTTACGTGGGTCCGCCACATGATGACAGCA
GTTTGCTGTCTTGTCGAATTTTAAATTTGTCTCTCTTTGGTCATGATAAG
CTCAGGAGAGCTGCAACGATCACAGATTTTGTTCTTATTGCCCCCCCCCC
CCTTCTCTCTCCCTCTTTCTCTCTTTCTCCCTCTCCCTCTCCCTCTCTCT
CCCCCCCTCTCCCCCTCTCTCTGTTTGTCCCTTTCTCTCTAAATCTCTCT
TCGTCTCTTTCTCCCTTTCTCTCTCTTCGTCTCTTTCTCGATCTCTCTCC
ATTTCCCTCACTCTCTCTCTTCTGCCGATGGTATGCATACGGTTTTTCTG
TTCCACTGCTGTCCCGTTCTGCTCCGTCTTGTTTTTTTCTTCCAGGCCCC
AGTGGCCCGTGCCTCAGCACCGCATGGACCCAGAGCCTTGCCGGATGTTC
CTATGGAACGCGGTTTCGGCCGAGCGGTTCTGCGAGTGCACAAGGCTGTT
GAAGTTCACCGCTGACAGAACGCTGTGGGAAGGTGAGACCGGCGGAACAC
AGGGAACACGATGTATTGGAGGGATTTGTCAAATTCGTGCCCATACGCGT
GTACCTGGTACAAGATTTGGGCAGTGCTGAACGAGCTGGGCACCACGCTC
ACGGTAGCTTCTGTGTAGTCACGCACCACCGATTGCGCCTGTAGTCACCA
CACAACTCGATTCGTACCTATGCAAGGTTTGGGCATTGCTGAACTACATA
CATGGGGACCACGCTCACCATGTTATAGCGTCTCTATTGCCACACCTACT
ATTCCGCCTGTGGTCGCACGAATCAAATTCGTACCAATACTGGATTTGGG
CAGTGCTGAAGCACACATGGGCACCACGCTCACCTTGTAGCGTCTTAAAA
GTCACGCACGAACTACTATTGCGCCTGTAGTCGCACTTCGTACATATGCC
CATTGTGTTGACAAACATTTCTCTGCAGCATCTAGTTGTTGGTTCGTTGG
AGCTGATCCCCGATGCGTACGAGTGACGCGCTCTTTTTTGGAAGGGGATA
TTACGTTTTCGTGAGTCTGCACGCACGGGGAAAAATCACAACAAGGACGA
GCCCGTAAATGGAGTTTACCCGCGGCTGTCTCGCGACCCAGATCGCTGAC
TGATGACACACAAAAATAAATAAATAAACTACCAATGTGGTCATGGTGTA
GATTTACTATGCATAGGTGAGATCACCCCCCCACCCTCACTGAAGAAAAA
AAAGTTGATGAGCGCCTAAATGTTGGGTGATTCTGATAGGAATGGTGCGA
TGCGGTTCGGCGCGGTGCTCCGCCTCGCGTTGTCATCCATGCTTGGCTGT
GATCAAAGTGATTTGAAAATTCAGCAACACACCAGTACGCCCCCGCCCCC
CTCCCTCGTTTTCGTTTCGCCGTGCCCCTCGCCCGGCCCGCGCACGGGCC
AGACTCGCACCAACAACTTTGGCTACGGATCCCGTTCACGAGCCCTCTCC
TGCGGCTGTTTCCGTGCCAGCAGCACAGCCTCACCCGCTGCGCCAAGTGC
GGCCACGACTACCGCGCACACGTCGAGCGCACCCGCCAGAGGCGGAAAGG
CAGGCCTTACGATCAGGTGGGGGCACGGGGGCGAAAATTGCACTCGCTCA
CTCTCAACTCTATCTCTCTCTATCTCTCCATCTCTCCCTCTCTCCCTCTC
TTTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTTGTATATCT
GTCATTTTGTGCTTTGTTAACGATTAGGCAGGCCTTACTTTTTCATACCG
GTAGTTGCAACCATGGCTGGTGCGCCCCACTTGTCTATATGATACCTAAA
TGTACCTGTAGACTGGGGTCCGGAATAAATGTTTTGTCGACACACACACA
CCCACGCACGCACGCACACGTTGTGCTCTCTCCTTTTTGGGGCTATGTTC
GGGGCACTTTTGTACTGCTGTCCCCCGTTGTGCAAGCTCGCATGATGCTG
CAGCTTGCGCTAGTCATTGTTTTCATCTTCAGAATGTCTTTCGGGGGACA
GGGTTGCATGCTTAGGATCCCATCGATATGCCAGGAAAAGAGAAGGAGAT
GACATCGTGAGCAATGCTGGCATGACTATCCTATGTACAGCACAATTTCA
ATTTGCGTTCAGATATTATCCTCCCCCCCCCCTCTTTTTCGTCGTAATTT
TTTGTCATGTAGCTTCTTTTGAAGCACGTTAAGCAGCAGCAGCAGCAGAG
CAGCAGAAGGGGCGCCGCTGTGTTTTCCAAGGACTACCGAGGTGCCTCCG
TTTTTTCAGACAAGAAAAAGAAGTCGAAGCCGAAGAGGAGGGGCGCCGCC
CCCGCCGCCAGCATCACCAGCGCCATCGCCAGCGCGAGCGGAGCCGGCAG
CGGCAGCTACGGCAGCAGTGGTGCCGACGACGATGACGATGCAGCCGAAT
CCTTCGTCGGGTGGAGGAGACGGTTGGCGGTGCTGGCGGAGGCGCAGCGA
GCCACCCTGCTGCAGCTGTCGGGGCACCACGTCACGTCGGCGCAGGCCCG
AGCCGGGTTCAAAGCGCAGCACGACCGCAGAGTGCAAGCGGAAGCGGCCG
AGGAAAAACGACGACGGCGCAACCGTAGCAGCAGCAGCAGCAGCAGCAGT
ATTGAGCGCTGGGTTGTCGGGCGTAAGGACTACGGCAGCAACCGGCGTTT
GGGGGGAGATAGGCGGCAGAGGCGGCGAGGAAGGAGGGCGGGTGATGGTG
GTGGTGGTGGTGGTGGTGGTTCGTCAGGGGGAGTCGGGGTGGCAAACGGG
TCTGGGGTCAGCAGCCGCGGTGGTGACGGGAGGGGTAGAAGTAGTCGAGG
AAGGGGGTATACGGAAGACGAGACCGCGCAGAGAAATCTTCGAGCGTTTG
ACCCCATGGAGTACATACAGATTTGATTTGATTTGATTTGATTTGGTTTT
TTTTTGTTTGGTTTGGTTTGATTGATTTTCAACAATTTTTCTTGTGAAAT
CTCCATCAAACGCGACAAGGGCGGGATCCCTGGGGATGTGTCCGAAGTAT
GTGTCTCTTTCAATTTCTCGCAGTCAGGGGTCGAAAAATGGAGCGCTTGT
AGGATCAGGCTCTCAGTAAATATTGTGTTCTGTGTTTGCTCATCACGGCA
TGTTGTTCAGGTGAGCTAGCCTAGCCCTCAAGGGGGGCGTCTGGCATACT
CCGTGGTGCACGGCAGGCAGTCTGCAGATATGTATTTCTATGGGCTGGAA
ATCGTATACTTCGAGCGTCGTAAATGTCATGCTTACAGCACTACACCTCC
TGTAGTACTTCGAAGTATTATGTTTGTGGGTTTTGGGGACGTTGTGGGCC
AAACGTACGCCCAAAACTCTCAAAGTTTTATCAAATTTGTTCCGGAGTCG
TCGCTTATTGTGGCTGTCTTCTTGTCGTCGGAATCGATTTGTTTGCATTC
CTGCGCCCCTCCTTTTTATGACGGAGTTCAAACCGCCGCATTCAGCGCTG
CAAACCCGACAGCTGATGTTTACGTGATACCATCTGTCAGCCTGAGCCTG
GTCGTTTGTTTTTGTGTGGCCGCCTTCATGTAAACATATTCCGTATTTCT
CAAGACGAGTATCGTACGGTATGAAAGTGTGACTGACACAGCAGTGATGA
TGGTGTATTGCAGACAACGCAAAACGTCGGCCCATCTCTCAGGATGTAAG
CGATCGTTTCAGTCACGAAGAAGGCGGATTTTAGACAGCGCAGAAAGGTC
G
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig68:398441..403191-

>mRNA_P-littoralis_Contig68.69.1 ID=mRNA_P-littoralis_Contig68.69.1|Name=mRNA_P-littoralis_Contig68.69.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1104bp|location=Sequence derived from alignment at P-littoralis_Contig68:398441..403191- (Pylaiella littoralis U1_48)
ATGATCGACAGGTTAAAGACCGCGTTCGGCGTGGTGGTGGCTCTCCTACT
CTTCTCGAGTACTGGCTCGGCCAAGAAAGCGAAGCGATGGACTTACCCCA
GGCCCCAGTGGCCCGTGCCTCAGCACCGCATGGACCCAGAGCCTTGCCGG
ATGTTCCTATGGAACGCGGTTTCGGCCGAGCGGTTCTGCGAGTGCACAAG
GCTGTTGAAGTTCACCGCTGACAGAACGCTGTGGGAAGACTCGCACCAAC
AACTTTGGCTACGGATCCCGTTCACGAGCCCTCTCCTGCGGCTGTTTCCG
TGCCAGCAGCACAGCCTCACCCGCTGCGCCAAGTGCGGCCACGACTACCG
CGCACACGTCGAGCGCACCCGCCAGAGGCGGAAAGGCAGGCCTTACGATC
AGCACGTTAAGCAGCAGCAGCAGCAGAGCAGCAGAAGGGGCGCCGCTGTG
TTTTCCAAGGACTACCGAGGTGCCTCCGTTTTTTCAGACAAGAAAAAGAA
GTCGAAGCCGAAGAGGAGGGGCGCCGCCCCCGCCGCCAGCATCACCAGCG
CCATCGCCAGCGCGAGCGGAGCCGGCAGCGGCAGCTACGGCAGCAGTGGT
GCCGACGACGATGACGATGCAGCCGAATCCTTCGTCGGGTGGAGGAGACG
GTTGGCGGTGCTGGCGGAGGCGCAGCGAGCCACCCTGCTGCAGCTGTCGG
GGCACCACGTCACGTCGGCGCAGGCCCGAGCCGGGTTCAAAGCGCAGCAC
GACCGCAGAGTGCAAGCGGAAGCGGCCGAGGAAAAACGACGACGGCGCAA
CCGTAGCAGCAGCAGCAGCAGCAGCAGTATTGAGCGCTGGGTTGTCGGGC
GTAAGGACTACGGCAGCAACCGGCGTTTGGGGGGAGATAGGCGGCAGAGG
CGGCGAGGAAGGAGGGCGGGTGATGGTGGTGGTGGTGGTGGTGGTGGTTC
GTCAGGGGGAGTCGGGGTGGCAAACGGGTCTGGGGTCAGCAGCCGCGGTG
GTGACGGGAGGGGTAGAAGTAGTCGAGGAAGGGGGTATACGGAAGACGAG
ACCGCGCAGAGAAATCTTCGAGCGTTTGACCCCATGGAGTACATACAGAT
TTGA
back to top