mRNA_P-littoralis_Contig68.46.5 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig68.46.5
Unique NamemRNA_P-littoralis_Contig68.46.5
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig68.46.5 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig68contigP-littoralis_Contig68:287353..291068 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size704
Hectar predicted targeting categoryother localisation
Exons3
Cds size390
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791412.6031086-UTR-P-littoralis_Contig68:287352..2874771680791412.6031086-UTR-P-littoralis_Contig68:287352..287477Pylaiella littoralis U1_48UTRP-littoralis_Contig68 287353..287477 -
1680791412.6139703-UTR-P-littoralis_Contig68:288213..2883521680791412.6139703-UTR-P-littoralis_Contig68:288213..288352Pylaiella littoralis U1_48UTRP-littoralis_Contig68 288214..288352 -
1680791412.6299107-UTR-P-littoralis_Contig68:290628..2906781680791412.6299107-UTR-P-littoralis_Contig68:290628..290678Pylaiella littoralis U1_48UTRP-littoralis_Contig68 290629..290678 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791412.6414251-CDS-P-littoralis_Contig68:290678..2910681680791412.6414251-CDS-P-littoralis_Contig68:290678..291068Pylaiella littoralis U1_48CDSP-littoralis_Contig68 290679..291068 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig68.46.5prot_P-littoralis_Contig68.46.5Pylaiella littoralis U1_48polypeptideP-littoralis_Contig68 290679..291068 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig68.46.5

>prot_P-littoralis_Contig68.46.5 ID=prot_P-littoralis_Contig68.46.5|Name=mRNA_P-littoralis_Contig68.46.5|organism=Pylaiella littoralis U1_48|type=polypeptide|length=130bp
LLGAQPTQDGWRTSASVEQDLDLDDNAVPSSLRNACIGVKGKQVRKDLWD
RLGKKGVYRRLVRQRPHRVWWLAFCGEGDPASDISPPRDFDERVRMGLLV
AGEDAVDEDRSAAAGEGDVRVWRYRQSTR*
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mRNA from alignment at P-littoralis_Contig68:287353..291068-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig68.46.5 ID=mRNA_P-littoralis_Contig68.46.5|Name=mRNA_P-littoralis_Contig68.46.5|organism=Pylaiella littoralis U1_48|type=mRNA|length=3716bp|location=Sequence derived from alignment at P-littoralis_Contig68:287353..291068- (Pylaiella littoralis U1_48)
TTGTTGGGCGCCCAACCAACCCAGGATGGTTGGCGTACGTCCGCAAGCGT
TGAGCAAGATCTAGACCTTGATGACAACGCTGTACCCAGCTCACTACGCA
ATGCATGTATCGGAGTAAAAGGAAAACAAGTCAGGAAGGACCTCTGGGAC
AGACTAGGGAAAAAGGGCGTGTATCGACGCCTTGTTAGGCAGAGACCACA
CAGGGTTTGGTGGCTTGCGTTTTGTGGAGAAGGGGACCCTGCCTCAGATA
TTAGCCCTCCACGGGACTTCGACGAAAGGGTTAGGATGGGATTGCTGGTT
GCTGGAGAGGATGCCGTAGATGAGGATCGCAGTGCCGCTGCAGGAGAAGG
AGACGTACGCGTCTGGCGGTATCGCCAGAGCACGAGATGAGGAAGGCTGC
TGCTGCTGGGGAGGAAAGTGACCGATAAAGTTCGCCAAAGGTGCGGTCCT
TCGAAATGGTCCATTTTTTGTGTATGATTGATAAGTCTGTCCTGCGTTGG
CAATGGTACGTTGATGTTACGCTTTCGTGTCCGTAATTTGGTTAATTGAA
GAGCTTTCCCTCTAATAGCAAGTACTTGTAATAGCGAGAGACAGCGAGAG
ACATTGCCGTATGATAGGGTTAGGGTCTGTCTAATCATTGCGGATTTTTG
CCGGGAAACAGAGAACCATTCCTGGAAACCTAAAATCTCCGACAATATGC
AGGCGTTCTTCTCGGTTTCCCTGAAATGAGCACTGCCCAAAAAATCCCGA
AATACTCATTTCAGGGTTCCCGGAAATTTGAACCCGTATTTCGGGCAGAC
GTGCCTCCAAGTTCGGGCACGCCTGCATAGGTGCTCAGTTCACACGAGCT
GTCGTATGCACGCCATCCCCAGGCCACACAACCACACAGTGAGTTCACAG
GGTCGCCCTAAGGCCATGGCTGATGGGAGGAAGCGCCTTCGGATGCTTCG
CTTGGCGTCTAGAGTTCGGATGCGGCGTGACTGCTGTGGGCGGGAAGAAG
CTCGGGCTTCAGGATAAAAAACAGAGAAAAGGCATTTTGAAAACAAATAC
TCGCCCTATCGTTTAGAACAGAGCGACACTCAGTTCATGTTTCCCGGGAA
TGGTTCTCTGTTTCCCGGCAAAAATCCGGAATGATTAGACAGGGCCTTCG
TAAAATACGACACCTGTTGAAGCGATTTAAAATCACAGGTACTCCACACC
GAAGAGAGCATCACCATCAAACGATACGTTTACTCTCGATGCGTTTCCAA
CACTCCCTTTACGGCACCGACACATGTAATGAATCGTGCTTTATAAATCC
GTCCAGGGGGGTCCGTCGTATCTGACGGCACCCACGGAACACACGCGTCA
CGCCGCCACACACACCACGCTGTAGAGCTGTATTCTGCTCTACAGCTGTA
TTCAACTGTACTGCTGCTGCTTTACTGCTGCTGCTGTACTGCTGCTGCTG
CTGCTGCGCTGCTTATTCTGCTGTACTGCTGCTGCTGCTACTTCGCTGCT
GTTGCTGCTGTAGTGCTGCTGCTTGGATGTGTAATGATGTATCATCTCGA
AGTATCATACTCTCACTCGAGACGGAAAGCATAGCAGTGGCACCGTTACA
ACAACACAAGAACAGAAGTACAGCAAGACAAGAGCGTTGTGTGTGCGGCA
GGCTGCGGCGTGATGTGTAAATGCTGTGATGCGATATTTTAACACGAACA
CAGGTCACATTATCATCCCCTACAGGCGTCAACAACAGTAGTACAGCCGA
CCGTGGGAACGGACTGTAGACATGCTCGTAATGATGGGTCTGAGGCTTGC
CGCAGGTGGCACGATGCAGCTGTGTCAGCTGTGTCAGCTGTGTGCTCCGC
AGGCTTATCGAAAAGGCTGACGTATACTCTGTTGTACACGGCTCAACGAT
CTTTCAACTCAGAGGCTATACACGCTTCTGCACAATGCGGCTCGATGCGT
CTCTCTCTCGGTGTCGAGTGGAAAGGAGAATAGGAAATATATCTTGTTAC
TGACTGACTCCGGGGCCAGGTTTGGGTGATGAAGAGGAGTGAACACATGT
AGCGTGAGCACGCGCGGTGTGTATCACAGCTCTGAGAACCTGAGAAACAA
TACTCATGACCCTGATAACAAAACTATCATACTCATGACCCTGATCACAA
AACTACAGCAGCATCTTACATGACCCTACATAGAACCAACAATTACCAAA
TACAGCAACCTGCAATATACTTGCTGAAGTTCTTCCGGAGACCCTATATC
ATCAAGTACTGAGTGTACCAACAATAACTCAGATTGTTCTGATGTTCTGT
ATCAGGACAATGTACGTATGCACCCAGAACGTCTCAACGGTACACAATGC
TAAGTGATAGCTCTACCGCCAGAATATTATCAGAAATATCTGGATCGCAC
AACATCAGGTCCGTTCATCTCTCATGGACACCATATTCATATATACCTGG
TACGGAGTACTTCGTATATGATACCGGTATGATATCTTGCAACAGGTTAT
TTTTGCTGCTGCTACACGTACTGTACTCGTAGAACGAGACTGCTACTTAC
TGCTGTACTTTACAGTAGTAGCTTATCAAAGCATACAACCTGTACTCTCA
CTTGCCATGTCAAAGACTACTTATCATGGTGGTGCTGGTATCTAAAAATG
ACAAGCTGAACTGCTTTCACAGCAGTACTTCCAACACGTAATGCTGGTGT
GGTGTCGCTGGCCTAGGGGTGGAAGGCTCGGGGGAAGCAGCAGCCAGGGC
TGGTAATGTCGTAAGGGATGCAGCGGCAGGTGGGCGGACTGCTGCTGCCG
TTGAGCGTGCTGCCAAAGGCAAACAACCTGCAAGGGGTAGGAAGCTTCCA
AAGGAGTGAGTCCGTGTGACCTTTTTGTTTTGACTCTTTGTGCGCGGGCC
GTCACACATTGTAACCCTAGCTAGATGTGACTATACACCGTTTTTTTTTG
TTGAATAGAGGACAGATGCACATTTGTGGCGTTAGTTTTTTCGTTGTTGT
GGATAGACACAACGACATTGTTGTGTTATTTTTTTCTTGTGGATAAATAC
AAAAGCACCCTTCTTTTTTTGTTTATTATAGTGGATAGATAAAATCACAT
CGTTCTTGTACTGTTTTTGTTTGGAAGATGGGCAAAATAGTACCGTTCAG
TTTTTTTATCATTTGCGATACAGTAGATAAAATCACCCCGTTCATATACT
GTTTGTTTTGTTGGAGTGGATAGACAAAATCACATCGTGCTTGTATATAT
TTACTTTTTTTGTGGCGGATGGAACAAATCGCATGTTTTTTTTTGTTATT
GTGTGATCACACTGTGCTTGTACTCATTTTGTTTTTGGTATTGTGTTTTC
ACACTGTGCTTGTATTTTTTTTAGGGTCAGGAATGAACAAATCACACTTT
TTTTTTCATTTTGTAGCGCGTAGATAAAATCCCGTCGTTATAACACCGAT
GTTCTTGTACTATTTTTTAAAGTGCAAACATCACATTTACATGAAACCAT
ACCCATTTTGTATTGTACATCGTTTCTTTACTTCATAGACATAATCACCC
TGCTGTTCTTGTACTTTTTTTTTCAACGTCGGCTGCGACAGATGGTAGGC
GGAGAAGGAGTAAGAGAGCGGAGTCAGCAGCGGCGCCAATCGTTAAGGTT
AACAGCGGTACACCAAACGCCACTGGCAAGCCAGAACATCGCCGTCATCG
CTTGCTGCCACGCCAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig68:287353..291068-

>mRNA_P-littoralis_Contig68.46.5 ID=mRNA_P-littoralis_Contig68.46.5|Name=mRNA_P-littoralis_Contig68.46.5|organism=Pylaiella littoralis U1_48|type=CDS|length=390bp|location=Sequence derived from alignment at P-littoralis_Contig68:287353..291068- (Pylaiella littoralis U1_48)
TTGTTGGGCGCCCAACCAACCCAGGATGGTTGGCGTACGTCCGCAAGCGT
TGAGCAAGATCTAGACCTTGATGACAACGCTGTACCCAGCTCACTACGCA
ATGCATGTATCGGAGTAAAAGGAAAACAAGTCAGGAAGGACCTCTGGGAC
AGACTAGGGAAAAAGGGCGTGTATCGACGCCTTGTTAGGCAGAGACCACA
CAGGGTTTGGTGGCTTGCGTTTTGTGGAGAAGGGGACCCTGCCTCAGATA
TTAGCCCTCCACGGGACTTCGACGAAAGGGTTAGGATGGGATTGCTGGTT
GCTGGAGAGGATGCCGTAGATGAGGATCGCAGTGCCGCTGCAGGAGAAGG
AGACGTACGCGTCTGGCGGTATCGCCAGAGCACGAGATGA
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