mRNA_P-littoralis_Contig117.130.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig117.130.1
Unique NamemRNA_P-littoralis_Contig117.130.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig117.130.1 vs. uniprot
Match: A0A6H5JGI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGI5_9PHAE)

HSP 1 Score: 272 bits (696), Expect = 5.080e-82
Identity = 195/380 (51.32%), Postives = 231/380 (60.79%), Query Frame = 1 
Query:   34 IERWCRGSVRRKFVEDMARFVQLLALALVFRQSDGFNAIGLVAPAARASPASSXXXXXXXXXXXXWRHAAAA--------SGRWSSPVRNSDRACRLATSSS-----HHNDHRHRRRQRHLQRCDHGAAISRIRRRPCHSSSPSSLSTGSWRGSAGRSSTSRSVSRGSSPGGDADAFEEDSGEEGG-GLATARETVPGARRKSRKKDKKGLDDNKKKSALGKAGDAIKATFNAFMAASTVVSIALAAEAFWQLHGTPLTLSNAVPTLTKLLPLTGIGVFGAAQLVGVVARVVRVIVTLPIMLSGAWVILQNAPKLLPQGSDLTGAGSLAALLATPEVLEAAAVLALLGGTVLWAVNFATGAVGTLLKGQEDEEYEDDELD 1131
            + +WCR  +   ++  MARF   LALA   RQ   FN +G     A  SPA S                A+A        SG  + P     +A RL +S++         HR+RR     QRC       R+RRRP  +S            SA R  TS      SS G  +   ++  GEE G GL  + E+ PG    SR+   +G      KS L KAG+A+KA FNAFMAAST+ S+ALAAEA WQLHG PLTLSNAVPTLTKLLPLTGIGVFGAAQLVG+VARVVRVIVTLP+M+SG WVILQNAPKL P+G DLTGAGSLAALLATPEVLEAAAV+ALLGGT +WA+NFATGAVG L+ GQ     E++E D
Sbjct:    1 MRQWCRSRLDWGYLGGMARFAHALALACFLRQCGAFNPVG-----APPSPAFSSSFRQPSSLATCCGRVASATSPSRFVPSGSLACPT--PPQAARLHSSNNPGDACRPEGHRNRR-----QRCQRDGTEWRLRRRPWSTSL-----------SAVREGTS------SSSGAPSSGQDQLEGEEAGWGLPASGESEPGG---SRETKNRGRGKEGGKSVLEKAGNALKAAFNAFMAASTLASLALAAEAVWQLHGAPLTLSNAVPTLTKLLPLTGIGVFGAAQLVGLVARVVRVIVTLPVMVSGTWVILQNAPKLFPKGLDLTGAGSLAALLATPEVLEAAAVIALLGGTAIWALNFATGAVGALMPGQSKSSREEEEED 348
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BLAST of mRNA_P-littoralis_Contig117.130.1 vs. uniprot
Match: D7FYX7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYX7_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 1.240e-42
Identity = 147/312 (47.12%), Postives = 175/312 (56.09%), Query Frame = 1 
Query:   34 IERWCRGSVRRKFVEDMARFVQLLALALVFRQSDGFNAIGLVAPAARASPA-SSXXXXXXXXXXXXWRHAAAASGRWSSPVRN-----SDRACRLATSSS-----HHNDHRHRRRQRHLQRCDHGAAISRIRRRPCHSSSPSSLSTGSWRGSAGRSSTSRSVSRGSSPGGDADAFEEDSGEE-GGGLATARETVPGARRKSRKKDKKGLDDNKKKSALGKAGDAIKATFNAFMAASTVVSIALAAEAFWQLHGTPLTLSNAVPTLTKLLPLTGIGVFGAAQLVGVVARVVRVIVTLPIMLSGAWVILQNAPK 933
            + +W R  +    +  M R    LAL    RQ   F+ +G     A  SPA SS             R A+A S R   P  +       +A RL +S++         HR+RR     +R D G    R+RRRP    S +SLS       A R  TS S S  +  G D     +  GEE G GL  +RE  PG    SR+   KG  +   K  L KAG+A+KA FNAFMAAST+ S+ LAAEA WQLHG PLTLSNAVPTLTKLLPLTGIGVFGAAQLVG+VARVVRVIVTLP+M+SG WVILQNAPK
Sbjct:    1 MRQWRRSRLDWGSLGGMVRLAHALALTCFLRQCGAFHPVG-----APPSPAVSSSFRQPSTLTTCCGRAASATSPRRLVPSASLACPTPPQAARLHSSNNPGDACRPEGHRNRR----YRRRDDGTEW-RLRRRP----SLTSLS-------AVREGTSSSSSAPAPAGQD-----QLEGEEVGWGLPASREPEPGG---SRETKNKGGGEEGGKPVLEKAGNALKAAFNAFMAASTLASLVLAAEAVWQLHGAPLTLSNAVPTLTKLLPLTGIGVFGAAQLVGLVARVVRVIVTLPVMVSGTWVILQNAPK 283
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BLAST of mRNA_P-littoralis_Contig117.130.1 vs. uniprot
Match: A0A836CM52_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM52_9STRA)

HSP 1 Score: 102 bits (255), Expect = 1.350e-21
Identity = 74/184 (40.22%), Postives = 108/184 (58.70%), Query Frame = 1 
Query:  586 ARRKSRKKDKKGLDDNKKKSALGKAGDAIKATFNAFMAASTVVSIALAAEAFWQLHGTPLTLSNAVPTLTKLLPLTGIGVFGAAQLVGVVARVVRVIVTLPIMLSGAWVILQNAPKLLPQGSDLTGAGSLAALLATPEVLEAAAVLALLGGTVLWAVNFATGAVGTL--LKGQEDEEYEDDELD 1131
            A+ K  KK K    DN + S     G+ +++ +N  + A TV S+ LA +A  +L   P+TL     TL  LLPL   GV GAA+LV V+ R+VRV+VT+P++L GA++   + P LL    DL   G L A+LATPEVLEA A++A++ G  +W V    G V  +  ++G + ++  DDE D
Sbjct:    3 AKSKRGKKTKTASSDNDESSTRS-IGEVVRSAWNGLLVALTVASVVLAVDAVVKLKTQPITLD----TLGNLLPLAAFGVAGAARLVAVLLRLVRVLVTVPVVLGGAYLAAPSIPDLLKHSPDLA-TGGLFAVLATPEVLEAIALIAVIVGAGIWIVRQLAGMVTGMASVRGNDGDD-SDDEYD 179
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BLAST of mRNA_P-littoralis_Contig117.130.1 vs. uniprot
Match: A0A7S2V4B2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4B2_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 3.220e-11
Identity = 46/155 (29.68%), Postives = 76/155 (49.03%), Query Frame = 1 
Query:  628 DNKKKSALGKAGDAIKATFNAFMAASTVVSIALAAEAFWQLHGTPLTLSNAVPTLTKLLPLTGIGVFGAAQLVGVVARVVRVIVTLPIMLSGAWVILQNAPKLLPQGSDLTGAGSLAALLATPEVLEAAAVLALLGGTVLWAVNFATGAVGTLLK 1092
            D K K       D+ K  F   +    + S+  A  A ++L+  P TLSN   T+T +LP    G FG  +L+G   R+VR+++++PI++ G W +    P+ +    DL    SL  + A PE++EA  ++  +G  + W        V +L K
Sbjct:  116 DQKGKITFQSVLDSAKKAFGFLLVGVAIYSVYTAGTAVYKLYTEPFTLSNLGSTVTNVLPALTFGYFGTLKLIGAFMRLVRILLSVPIVVGGTWFLAPRLPEFIQSSPDLAST-SLLGIFAVPEIVEAIILILFVGSFLFWLTQQFLKLVESLTK 269
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig117.130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JGI5_9PHAE5.080e-8251.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYX7_ECTSI1.240e-4247.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CM52_9STRA1.350e-2140.22Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2V4B2_9STRA3.220e-1129.68Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig117contigP-littoralis_Contig117:399008..402728 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2010
Hectar predicted targeting categorysignal peptide
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-19_002870.1
Cds size1107
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789489.745997-UTR-P-littoralis_Contig117:399007..3990341680789489.745997-UTR-P-littoralis_Contig117:399007..399034Pylaiella littoralis U1_48UTRP-littoralis_Contig117 399008..399034 +
1680789489.7913518-UTR-P-littoralis_Contig117:401852..4027281680789489.7913518-UTR-P-littoralis_Contig117:401852..402728Pylaiella littoralis U1_48UTRP-littoralis_Contig117 401853..402728 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789489.760366-CDS-P-littoralis_Contig117:399034..3991431680789489.760366-CDS-P-littoralis_Contig117:399034..399143Pylaiella littoralis U1_48CDSP-littoralis_Contig117 399035..399143 +
1680789489.7701285-CDS-P-littoralis_Contig117:400404..4012011680789489.7701285-CDS-P-littoralis_Contig117:400404..401201Pylaiella littoralis U1_48CDSP-littoralis_Contig117 400405..401201 +
1680789489.779766-CDS-P-littoralis_Contig117:401651..4018521680789489.779766-CDS-P-littoralis_Contig117:401651..401852Pylaiella littoralis U1_48CDSP-littoralis_Contig117 401652..401852 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig117.130.1prot_P-littoralis_Contig117.130.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig117 399035..401852 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig117.130.1

>prot_P-littoralis_Contig117.130.1 ID=prot_P-littoralis_Contig117.130.1|Name=mRNA_P-littoralis_Contig117.130.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=369bp
MAIERWCRGSVRRKFVEDMARFVQLLALALVFRQSDGFNAIGLVAPAARA
SPASSSSTTFRNQSPPPWRHAAAASGRWSSPVRNSDRACRLATSSSHHND
HRHRRRQRHLQRCDHGAAISRIRRRPCHSSSPSSLSTGSWRGSAGRSSTS
RSVSRGSSPGGDADAFEEDSGEEGGGLATARETVPGARRKSRKKDKKGLD
DNKKKSALGKAGDAIKATFNAFMAASTVVSIALAAEAFWQLHGTPLTLSN
AVPTLTKLLPLTGIGVFGAAQLVGVVARVVRVIVTLPIMLSGAWVILQNA
PKLLPQGSDLTGAGSLAALLATPEVLEAAAVLALLGGTVLWAVNFATGAV
GTLLKGQEDEEYEDDELD*
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mRNA from alignment at P-littoralis_Contig117:399008..402728+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig117.130.1 ID=mRNA_P-littoralis_Contig117.130.1|Name=mRNA_P-littoralis_Contig117.130.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3721bp|location=Sequence derived from alignment at P-littoralis_Contig117:399008..402728+ (Pylaiella littoralis U1_48)
ACTGCAACTAGCGACATCTGGAGGTTGATGGCGATAGAGCGGTGGTGCCG
TGGATCTGTGCGAAGAAAATTCGTCGAAGATATGGCACGGTTTGTGCAGC
TGCTGGCCTTGGCGTTGGTGTTTCGTCAGAGTGACGGTGGGTACATTTTG
TGACACGATTTCTTGACCCAGCAGCCTCGCTCAATCTCAGCACAGCCGAG
CCGATTCTCGCTGCGTGTCTTTGTCGTAGGCATGCATACGAGTCTGCCAG
AGGGGTTGTTGGGCGTTGATATTACACCTCTCTCGGTGATTGGTTTTGCC
CAGCAAATCCCCCGGCAGCACCGCTGTAGACAAGCTGTAAAGCTTCCCAA
TTCCAACATAATTTGTTTTCTGCGGAGGTTCTACTAATTCCTGCATGAGC
GGTTCTACGTTCTACATGTCGCGTCCTATGTTGCAGTTCTTGTTCAGAAG
GCCGCCCGTACGATACGAGCAGCCATCAGGCAATCCCCCACAAGGCCCGT
GTTCATGCTCTGCTAGACTGTCTGGTGTAAGGCAGCAAGCAACCTTCACC
ATCGACTTCGGTTGGGTGGTTTCGACATGACGCTTCCATGCGTGTTTATC
CACGCATTTCATAGGATGCAGTGTAGTTTTACCACGTACGGAGTATTATC
GGTGCAACGACGTACTTTCACTTCTTCACACCAGGTATCATATCAGCCCG
CAACGTCACCGCACAACCTACTGTAAAGCTTTGAAATGTGCCCAAAATAG
TCTTGTTCAGCTTGATACCCTCGGGGGAGCTGCAATGGTATGTTATCTGA
CGAGTTGTAGGAACACGAGGATGCCACTCTACTCAAGGATTATATTCTAG
AGAGAGGCGATCACATTCATGTGTGTGTGTCATCCCGTTTATTCTGGGCA
CCAGTCTACACTTTTCGGTATGAGGTGGGTGCACCAGCCGGGGTAACACA
CGAGCTTTTTCACTTTTTGTTTTGTTTTGTTGCCCACACCTTCCTCCTGC
GGTATGATACGCGCCTCACGAGTAATTTTTTTCTTCCTCCTAGCACGTTA
TGTGCCTGGTTTGTGACCACGGGCTAGACTGCGGCGGTAGTGAGCTAATG
TGAGAATCAACAACAACAAATTCGCTGTCCACTGTAAAGTCGCAAGAAAC
GCTCTCAGAGAAAATGGAACCCACGACCTTACAGCTAGCAGGTTAACGAG
GGAACCGCTAGACCACCAGGGCGACCAGGACAAAAAAAAAAGGTCGGATA
CCTGAGTGTGCCATGTGCGTACCTCTTGTCGGTCACCTGCTCCCAAGTAT
GATGCTGTACCATACTTCGAGATATGAAATAGTGCAACACACAAGACTGC
CTTCCTGGTATTTATTTCAAATATGATGCCTGGCGCCATGTGTTCAGGTT
TCAACGCTATTGGTCTCGTCGCTCCTGCCGCTCGAGCCAGCCCTGCCTCC
TCGTCGTCGACAACCTTCCGGAACCAGTCGCCACCGCCTTGGCGTCACGC
CGCAGCCGCGTCGGGAAGATGGAGCTCTCCCGTCAGAAATTCAGACCGCG
CTTGCCGTCTCGCCACTAGCAGCAGTCATCACAACGATCACCGCCACCGG
AGACGACAACGACATCTCCAGCGGTGCGACCACGGCGCCGCAATCTCCCG
AATTCGTCGAAGGCCCTGCCATTCCTCGTCGCCGTCGTCGTTGTCCACGG
GCAGCTGGCGAGGCAGCGCTGGCAGGAGCAGCACCAGCAGAAGCGTTTCT
CGGGGATCGTCTCCGGGGGGAGACGCGGACGCGTTTGAAGAGGATTCGGG
GGAGGAAGGCGGGGGTCTTGCTACCGCCAGGGAAACGGTACCTGGCGCGC
GGCGAAAATCGAGGAAGAAGGACAAGAAGGGGCTAGACGATAATAAAAAA
AAGTCGGCGTTGGGGAAAGCGGGGGATGCGATCAAGGCGACGTTTAACGC
CTTCATGGCGGCGAGCACGGTCGTCTCGATCGCCCTGGCGGCGGAGGCCT
TCTGGCAGCTGCACGGCACGCCGCTCACGTTGTCGAACGCCGTCCCGACG
CTGACCAAGCTGCTCCCCCTGACGGGCATCGGCGTCTTCGGCGCGGCGCA
GCTGGTGGGCGTGGTCGCGAGGGTGGTGAGGGTCATCGTGACGCTCCCCA
TCATGCTCAGCGGCGCGTGGGTCATCCTGCAGAACGCTCCCAAGGTGGGT
CGGTTTGGGTGCTTGGAGGTGGTCGTTTGTTTGTCGATGCGGCGGCGTGT
GTTGGGGTGTGGTACTGCAGCATGCACCCCTTTGTTTCCAAAAATGTTTA
CTGTACCCTCCTGAATTTGCTGCTACTACGCTTGTCCTGTTTTCATGTGT
TCGTCATCGTTTGTGGTGCCGGAATTCACTCGGCGCACTCTTAGGCTGGT
GGTTTCCAGGGTACATGAATGCTTTTTCTCTCCCCAGCCCCCCCCCCCAG
TACACTTGGCACCACCGCGCAAGGGTTTTTGCATGTTTCAGTCCGCACCA
CACCCACTTACCCCCAACCACTCGCCCACGTGGGTCACTCATAGCTGAAT
ATTTGTATTCGTTTTGTTTTTTGTGTTCCGTACTTCCAACACACAACGCC
TGCGCTTCTTTTGTTTGGTTCTGTTGAACCGTGTCCGTATTTAGCTCTTG
CCGCAAGGATCGGACTTGACGGGGGCAGGGTCGCTCGCGGCGCTGTTGGC
CACGCCGGAGGTGCTGGAGGCTGCCGCTGTGTTGGCGCTCCTAGGGGGCA
CCGTGTTATGGGCGGTCAACTTCGCGACGGGGGCGGTGGGGACGTTATTG
AAGGGTCAGGAAGACGAAGAATACGAGGATGATGAGCTGGATTAATTTAC
TACACATTTGAACAGATTCCGCTTGCTGGTTAAGTTTTTCGCCAATAGTG
GCCAAAACCTGTTTTTAGTTGTGTTTACTCCAGTAAACGAAACACACAAG
AAGGTGTGCGAGATGCTGTGTGATACGGCCGGCATTGTACGTGACTGGCG
ATGTGCCGCACTTTTTCTTGTGTTGGATTCCCTTCTGCTGTCGTGGTGCT
TGGCCGCTGCCCGTACGTCATGGTAACGGAATCGTGTTTGTTTGTGTAAA
ATAATACGGAATATTTATCGCCATTCAGTAGTTAATTACCCTCGTCAGTC
ATAACCCCACCCATGTTGTGTTTGGAAATACGAGACGTCTTGTCGGTTGT
TGCTGCCCGACCCAATCAAATTTCACCAGCCAATAAGTTGAGACTGCGGG
GCAGTTCTGCCCTCGGGGCTATCATATAGAGGAAAGGAGCAGGTCCTCCG
ACACGTGTAGGAAATAACTTTGTATTCGTCTCTTGTGCAGCCGCTCTGAA
ACGAAGTCAAATGGGCTTTCCTTCGTCGAGTAGCCTTTTCTGCTATCGGT
TCTCTCGGTCTTCCCTCTGACTGCACACTCTGGCATATGGGTCGATGGCG
TGTTCCCTCCTTGCTTTGCACGATCATCGTGTGCATCTGCAGGGTGTGAT
GGGCGTAGCGACACCGCAGTTAGTCATCGCACACACGCTGTTTCATTGCT
CCCACTCGAGCGCAGCAGAGACACTGTACTGCTGTAGGTGGTTTTATTTC
AAAGTTTTTTGTTATCTTCTTCTTTCCATGCTTTCACACACAACGAACGG
CTAAAAATCATGAGAATCCAGGGGCATCAACATGTGTCACACGATCACTG
GGGAGGAGCCAAAGATAAAAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig117:399008..402728+

>mRNA_P-littoralis_Contig117.130.1 ID=mRNA_P-littoralis_Contig117.130.1|Name=mRNA_P-littoralis_Contig117.130.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1107bp|location=Sequence derived from alignment at P-littoralis_Contig117:399008..402728+ (Pylaiella littoralis U1_48)
ATGGCGATAGAGCGGTGGTGCCGTGGATCTGTGCGAAGAAAATTCGTCGA
AGATATGGCACGGTTTGTGCAGCTGCTGGCCTTGGCGTTGGTGTTTCGTC
AGAGTGACGGTTTCAACGCTATTGGTCTCGTCGCTCCTGCCGCTCGAGCC
AGCCCTGCCTCCTCGTCGTCGACAACCTTCCGGAACCAGTCGCCACCGCC
TTGGCGTCACGCCGCAGCCGCGTCGGGAAGATGGAGCTCTCCCGTCAGAA
ATTCAGACCGCGCTTGCCGTCTCGCCACTAGCAGCAGTCATCACAACGAT
CACCGCCACCGGAGACGACAACGACATCTCCAGCGGTGCGACCACGGCGC
CGCAATCTCCCGAATTCGTCGAAGGCCCTGCCATTCCTCGTCGCCGTCGT
CGTTGTCCACGGGCAGCTGGCGAGGCAGCGCTGGCAGGAGCAGCACCAGC
AGAAGCGTTTCTCGGGGATCGTCTCCGGGGGGAGACGCGGACGCGTTTGA
AGAGGATTCGGGGGAGGAAGGCGGGGGTCTTGCTACCGCCAGGGAAACGG
TACCTGGCGCGCGGCGAAAATCGAGGAAGAAGGACAAGAAGGGGCTAGAC
GATAATAAAAAAAAGTCGGCGTTGGGGAAAGCGGGGGATGCGATCAAGGC
GACGTTTAACGCCTTCATGGCGGCGAGCACGGTCGTCTCGATCGCCCTGG
CGGCGGAGGCCTTCTGGCAGCTGCACGGCACGCCGCTCACGTTGTCGAAC
GCCGTCCCGACGCTGACCAAGCTGCTCCCCCTGACGGGCATCGGCGTCTT
CGGCGCGGCGCAGCTGGTGGGCGTGGTCGCGAGGGTGGTGAGGGTCATCG
TGACGCTCCCCATCATGCTCAGCGGCGCGTGGGTCATCCTGCAGAACGCT
CCCAAGCTCTTGCCGCAAGGATCGGACTTGACGGGGGCAGGGTCGCTCGC
GGCGCTGTTGGCCACGCCGGAGGTGCTGGAGGCTGCCGCTGTGTTGGCGC
TCCTAGGGGGCACCGTGTTATGGGCGGTCAACTTCGCGACGGGGGCGGTG
GGGACGTTATTGAAGGGTCAGGAAGACGAAGAATACGAGGATGATGAGCT
GGATTAA
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