mRNA_P-littoralis_Contig68.80.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig68.80.1
Unique NamemRNA_P-littoralis_Contig68.80.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig68.80.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig68contigP-littoralis_Contig68:439600..445021 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size403
Hectar predicted targeting categorymitochondrion
Exons2
Cds size402
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791410.4050088-CDS-P-littoralis_Contig68:439599..4397421680791410.4050088-CDS-P-littoralis_Contig68:439599..439742Pylaiella littoralis U1_48CDSP-littoralis_Contig68 439600..439742 +
1680791410.416314-CDS-P-littoralis_Contig68:444762..4450211680791410.416314-CDS-P-littoralis_Contig68:444762..445021Pylaiella littoralis U1_48CDSP-littoralis_Contig68 444763..445021 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig68.80.1prot_P-littoralis_Contig68.80.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig68 439600..445021 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig68.80.1

>prot_P-littoralis_Contig68.80.1 ID=prot_P-littoralis_Contig68.80.1|Name=mRNA_P-littoralis_Contig68.80.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=134bp
VGRVCRALLPLPTSLTPSLSLSRSFCPNALPASSLSRASPRRIPPHQTVA
PVRTARHWLLYGKERSLQILAYHCCKTLLLPPPPHTTFPSSLLYVISKAL
QSVGIENMRHKQRRGRLLRFFFCGSGSSPPPQW*
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mRNA from alignment at P-littoralis_Contig68:439600..445021+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig68.80.1 ID=mRNA_P-littoralis_Contig68.80.1|Name=mRNA_P-littoralis_Contig68.80.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5422bp|location=Sequence derived from alignment at P-littoralis_Contig68:439600..445021+ (Pylaiella littoralis U1_48)
GTGGGTCGGGTGTGCCGCGCACTCTTGCCTCTCCCCACTTCTCTCACACC
CTCTCTATCGCTCTCGCGTTCTTTCTGCCCCAACGCTCTACCTGCCTCAT
CTCTGTCCCGAGCTAGCCCACGAAGGATCCCTCCGCATCAAACGTGAGTC
ATGCCCCACCCACACTCTCTGTGTGCGTATCGTCTGTTCAGCCTTCCTGT
TTGAATCTCTAGAAGAGTGCTGTAACGCAGCGCTCCAGAGGCCGTTGCCG
TTGGAGTTTTACACTTGCACAAACTAACCGACACACACATACACACGAAC
GGTACTCACACCTACATGCACCCACGTGTAACGGGGGAGAGATTCGTCCG
GTGCAAAGCGTTCGTTTCTGCTGATGTATGCATACCCGTCGCATAGCAGA
GCCGGTCAGTCAGAGGGAAAAAAGACAAAATTCAAAATTCAATAATTTTC
TTTCTGCTGTTGTTTGTGCTCAAGTACTTCGAAGTACATCATTTCTGAGT
CTTTTCCATGAATCGGTTGAAATAAGATCGGATGAGACGGAGGTGGAAGT
CCGAACACGCACAAGACGACTGCTCTAATGAATGCCAAATTGAAAAGCCT
GGTACATATTGACCTCACAAGAAAGCTTCGACTGCCTATATACCAGGGAT
CATCTACTGCGTCGAAGGGACACAGAAATGGATGCATCACACCGCCGTGT
GTTCGTTGTTAACCCTCTCGGGACTGGTGAGATTTTGGATATCTCCCCTC
ATGGTCGCTCTTTCGTTTGCGAACAGGCCAAAAAAAAAAAAACTACTGTT
TCAACAGACCATTTTACCTGAGCCACGTCAACAGCTGACGTACCCGATAT
TTTGTTCAAATCCGCAAATTCCACAGCACCAGCAACAAGGGGAGCGGAGA
GTAGTGATGGAGTGGGGTGGAGGGGAGCACTGGGGCTTTTGTTCACATCA
GTTGGGGAGTATGACTACTGCTGGAGAAACACTTGGCTCATCTACGTACT
CTTGTTGGATTGTTGCCAAGAAGATGCCCGAGATATCTCACAGACCAAAC
ACAGAAAGCCAACGTCTGCTCTGTGGGTGCCAGGTACACCACACCGCCGC
CACGACTAGGTAACTACGCCAGCCCAGTTTGTGATGACAGAAAAGATGGT
GTACAGCAGTAACTTGCAGAGGGGGATGCAAAAAGAGGAACCAGCCTCAA
TTTATCGCTCGAAATAGGTACAGTAGCAGCAACATGTACAGCATGATACA
ACATGATACAACAGATTGATCCAGTAGTTTTGCTGATGCCACTGAAGACG
CTTACCCACAGTGAAGTCCACGGGTGTGTCCCAGGGTCCATTTCTAGTCT
CTATTTGGTATCAATATATGTAGCTCGCGTTAGCGTTTATATACTAACTT
TACAACAGAAGCTAGCGTTGTCTACTAAAATTACAAGAGAAGCGACGACT
TTTGTTCAAAAACAATATAATTATCCGCACCAAAATACAAACCTACAGCA
GCCCCCACCATCCCCACCATCGACAGAGCACGCGCCCATAAGCTTTGCCG
ACACAGCAGTACATCCCATTCTTCACGATAGCCCGACCATGAATGAAGGG
GAAGTTGGTGCTCACACCGTATGGGAGCTGTGCAACTCCCTTCTGTTCTT
TTTTATGGAGGGAGTCTGTTTCTAGCAGCCCCGGTCGTTGGGTTTTCGGG
CGAAATGCGATCTATTCGCACTGCCAGCGGTTCATTTCAGGGCGCTTCAG
TCCCGAAAAACTGAAGCTCGGAAGAATAACCCTCACTCCTAGCCTCACTG
ATTCCTTAGAGAAGTCCCAAAAGGGTTAATTTGCTCCAGCTCTTCGTCTT
TCGAGAGACGTACACTGCTGCTGCTACAGTAGTATGCTATGATATGATAC
TAGTGGATCGGGGTTGAGAAGCATGTGCGTTGGAGGGCCGCTTCTCAAGT
TACTACGTTAAGCCGTGTGCGTTGCTGTTTGGTAGCGTATGATATGTCTG
CTGCTTCACAGCAGTTCTGCTGCTGCAGAACACAGCTGGTGGTGTGCTGG
TGTGCGTGTGCGCCACTACAACGAACACAAAACGCCTCTCGTTTTTCACA
AAAAAGGGACCCCGATAATAACGCGCCTCCGACAAGATAGCTGTGCGCAC
AGGACACGGGCTGCGATGGACGCAGCAGCAGTGGGTAGATGCTATTTACC
TCTTCAGTTCAAGCCCTTGGTCGTAGCGATCTGTGCTGAACTGGTGCCAA
TGTGTTGTGGCCATTATTTCGGACACACACACAGACAGACAGGCATCTAA
AAACCTCGAAAATTAAATAAAGGCTCCCCCATGGCAGTTTTTTTTGTTTT
TTTTTATTCGCACATACACTCACACCTGCACATCACGACAAGTCGGTATG
AATTCGAAGCAGTTCGACAAGGAACTTACACTTCGCTTCGCTCGTCGCCT
GCTTCTCAATATTATACACTTTCGTACATTTTCCAATTTCGGATTCGAGC
TCTGATTTTTCAGATTTAGAGATGAAGGCGCTCAGATTCAAGCGGCGTTC
CGCAGACCAGCGCTTAAGGCGAAGGGTTTCAGATTTGCAGTACTGCTGTA
GGCGGGCTGATTTGACCTATATCACACCCTGTCTCTGTTGTAGGGTCACG
CATGTTGCCGGGGTATGTACGTATGCAGGTGGGATTAAAAAAAAACACGA
CAGGACCTTGACGACACCGCAACTGGATATTTCCGCGTACTGCTGTAATG
CTGTAGGGAGCAGCTGAAAATAAGAAACTTTCGATGCCGTATGTATACCG
TAATCGGCGGAGTTTTGCCCCCGGAGGGCCCCGGAGGAGGGATCTTTTTT
TGGGCTGAAACCAGTCCCCCCCGGGGGGAAATTGACGACAGGGGGGGGAT
CTTTTTTTTTTTAGACCTCTAACCCgGGGGGACATCTCCCCCGGGGGGTA
TGCCAAATATTGGTGATCCATACAACCACACACCACACACACCCAGAGAG
AAAGTGCCGACCCTGCGATGGATAAGGTGTACGAGCAAGCGTTCAGAAAG
CAAAAGGAGAAATCGAAAGCACCCACAAACAAAAAAAAATCATGTAACAC
ATATAAATTGCGCACGAAGCGCCGAGTTGGAGAAGCAATTTTCGCCCCTA
TTCATGCTTTCAAGTGCCTCGCGATGCCATCAAAAAACGACTCAATATAG
GGAAAATGCAACCCCCCCGGGGGGAACTCGCGGATAAATTACTACACCGG
GGGGAAGTTGACGACAGGGGGGGGATCTTTTTTTTTTCTTCGAAAAAAGA
TCTACCCCGGGGGCAAATCAAAATTTTGAAGCTTCCCGGCCGAAATGGTG
ACCCCCGGGGGGCCGACATTACCCCGGGGGCAAACTCCGCCGATTACGGT
ACATCATGCATGGTGCTGACCATTCTCGTCTTCTATCTCCCTGGTGGCGT
TGGCGTGGCGTGCGCATGACTCGATTTGGAAAGTCATGGGCCTGCAATCA
TCGAGGTCGGGGTGTTGCCGACGGGTCAATTTTGAAAGAACAAACAAAAC
AAACCCAACGGTGGTTCAGGTTTCAAACCCAGTCTCTGATACACAAAGTG
CATGAAACGAGAACGCGCTTGTACGTGGATGGGATATAATGTGGAGGACG
GGAGCAGTTGGGGCATCAAACATCGCGCATTCCGTTGATACCTGCTCCCA
GCCGGACTGCCGTTGTGCTGTAGCCCTCGATGGGAAGGGACGCCAATCAC
GCGGGTTCTATTTTGAAGCGGTTTGGTGTCCCGGAACATACTACGTACGA
CACACGTATTTAAGAATGATGCTGCGCATAAATAATACGGGTGTAGCACA
CGAAACATCCTGTGCTGCTGCTGTGCATGATTTGTACCTGCAGTTTTCTG
ATTGGTGCAAAAAATCAGAACAAAGTACCGCCACTTGCGTAGTAAAACCT
CAGTAACAGGGCGGTGGGTTACATATCGTACATATGAGATAATAAGGTAG
CCTTAATCGTGCACCGTAAGGGCTGGATCCCGTCATACGAGCGCCGAAAA
ATGCGCAGCAAGCTCCGGCTGGAGGGATATTACCATACCCACCCACCAGT
CACAACATCAGAACCAATGCCTGACACCTGTGTACATATGTGTCGCAAGC
ACTACTGCTGTGGATACGGCAGTGCAATACATAGTCAGTTTATTCGCGGC
GCACCCCCAACCTTTGTTTTCTTGTTTTTCCGAGGCGTTTATGGGCACCT
CACTTACTGGATTTCTTAGGGGCGTATTTTTTCACTACTGCGGCATGGAT
GGTTGTTATACGGTCGCCTAGTTTGTAAGGTGTGTTTCTTATTTCAACTA
TATTTTTGACACACCTTTCGTGAAAAAAGTACCCGGTGAATCATTGCTAC
TGCTGTACGAGCCTCTTTTTGGTTAACTCTGCTCTTCTTTATTGCGAGCG
CCGACTGCTGTAGTCAAATGTAATCATTCATAAAACGCCAGCAGAATCTG
GGCTCAGATCCAACGAAGGCGGTTTTTACGGACGGTAGCACCCCTACGTT
CGCAGGTGGACGGCACCCCCCCCTCCCCTCCCTTGCCAACACCTCGGATG
CCCTTACCCCTTGTTGTCAACTGATAAAGCTCGAAAGTGCACCACGGGCT
ATCCTTCAAACAAATTTGCAAGCATTTTCGGCCTTTGACTCAAGGTGTTC
ACAAGGGCAGCCCGGCAAAGGGGGGGGGAGTGGTGTCCACCTGCGTAGTA
ATTTGTCATTTGTATCGCACCAGTGGGATCGGGGGAATAAACCGCGTTGG
AGCAGGGACTCAAACCTTGCAGCAGTCTACCGGCGGAATTATTGCTGGTA
CTTTTTGGGGGTTGTGGTGCGCGATGGAGTATTTCCTCAAGGGCTGGTGT
GGCATTGTGGGATCGCGCCGGCGTACGTGACGAAACAACGCCGAACGAAC
ATGGCATCCGCCCAAGCCATGCCGGTATGTGAGGGTATGACGAGCGCTAC
ATACATACAGCAGCAGTGAAGATGACATGCAGATTTCAAGATGTGTCTGC
AGATTCTGACCGAAACGTTACCCGTACATGTCAGCAGTAGGTAGTATCCC
TATCAAACTCCCGCCTCCCGTGCCTCCCCCCGACTTTGTCGCCTGTAAAA
CAACACCGAACAGAGTGGCACCTGTCCGGACTGCGCGGCACTGGCTTCTT
TACGGCAAGGAGCGCTCCCTGCAGATTCTGGCCTACCACTGCTGTAAAAC
GTTGCTCTTACCACCACCTCCTCACACGACCTTCCCTTCGTCCCTCCTCT
ATGTCATCTCGAAAGCGTTGCAGTCTGTAGGGATTGAAAATATGAGACAC
AAGCAGAGGCGTGGTAGGCTCTTGCGTTTTTTTTTTTGCGGTTCCGGCTC
TTCCCCCCCCCCCCAATGGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig68:439600..445021+

>mRNA_P-littoralis_Contig68.80.1 ID=mRNA_P-littoralis_Contig68.80.1|Name=mRNA_P-littoralis_Contig68.80.1|organism=Pylaiella littoralis U1_48|type=CDS|length=402bp|location=Sequence derived from alignment at P-littoralis_Contig68:439600..445021+ (Pylaiella littoralis U1_48)
GTGGGTCGGGTGTGCCGCGCACTCTTGCCTCTCCCCACTTCTCTCACACC
CTCTCTATCGCTCTCGCGTTCTTTCTGCCCCAACGCTCTACCTGCCTCAT
CTCTGTCCCGAGCTAGCCCACGAAGGATCCCTCCGCATCAAACAGTGGCA
CCTGTCCGGACTGCGCGGCACTGGCTTCTTTACGGCAAGGAGCGCTCCCT
GCAGATTCTGGCCTACCACTGCTGTAAAACGTTGCTCTTACCACCACCTC
CTCACACGACCTTCCCTTCGTCCCTCCTCTATGTCATCTCGAAAGCGTTG
CAGTCTGTAGGGATTGAAAATATGAGACACAAGCAGAGGCGTGGTAGGCT
CTTGCGTTTTTTTTTTTGCGGTTCCGGCTCTTCCCCCCCCCCCCAATGGT
GA
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