mRNA_P-littoralis_Contig678.24.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig678.24.2
Unique NamemRNA_P-littoralis_Contig678.24.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig678.24.2 vs. uniprot
Match: A0A6H5K975_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K975_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 5.760e-23
Identity = 52/102 (50.98%), Postives = 72/102 (70.59%), Query Frame = 3 
Query:    6 ACSASSFMVRAKSFTEAELEILLECERDQVEQAFCVMGEALGTFHKGMHIPDNIRDLGAVSNTNPAESKHKQHKKGSASSSGRDNMKHIWRTYNDGVALKAL 311
            ACS S F+VR+ SFT   L +L + +++QV+QA  V+G ALGT HKG+HI  N+   G V+N N  E+K+K+ K  + S+SGRDN +HIWR  ND +A+KAL
Sbjct:  177 ACSWSCFVVRSPSFTAEGLHVLQKSQQEQVKQATRVIGVALGTIHKGLHITRNVVVNGVVTNCNVGEAKNKELKASAPSASGRDNARHIWRATNDSLAIKAL 278
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BLAST of mRNA_P-littoralis_Contig678.24.2 vs. uniprot
Match: D7FWW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWW9_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 1.470e-22
Identity = 53/102 (51.96%), Postives = 70/102 (68.63%), Query Frame = 3 
Query:    6 ACSASSFMVRAKSFTEAELEILLECERDQVEQAFCVMGEALGTFHKGMHIPDNIRDLGAVSNTNPAESKHKQHKKGSASSSGRDNMKHIWRTYNDGVALKAL 311
            ACS S F+VR+ SFT   L  L + + +QV+QA  VMG ALGT HKG+HI  N+   G V+N N  E+K+K+ K  + S+SGRDN +HIWR  ND +A+KAL
Sbjct:  256 ACSWSCFVVRSPSFTAEGLRALQKSQLEQVKQATRVMGVALGTIHKGLHIARNVVVNGVVTNCNVGEAKNKELKASAPSASGRDNARHIWRATNDSLAIKAL 357
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BLAST of mRNA_P-littoralis_Contig678.24.2 vs. uniprot
Match: D7G4Y8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Y8_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 1.670e-22
Identity = 52/102 (50.98%), Postives = 70/102 (68.63%), Query Frame = 3 
Query:    6 ACSASSFMVRAKSFTEAELEILLECERDQVEQAFCVMGEALGTFHKGMHIPDNIRDLGAVSNTNPAESKHKQHKKGSASSSGRDNMKHIWRTYNDGVALKAL 311
            ACS SSF+VR+ SFT   L  L + + DQV+Q   VMG ALG+ HKG+HI  N+   G V+N N  E+K+KQ K  + S+SGRDN +H+W T ND +A++AL
Sbjct:  245 ACSWSSFVVRSPSFTAEGLRTLQKSQIDQVKQVTRVMGVALGSIHKGLHIARNVVVNGVVTNCNVGEAKNKQQKASAPSASGRDNAEHMWHTTNDSLAMQAL 346
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BLAST of mRNA_P-littoralis_Contig678.24.2 vs. uniprot
Match: D7FSA9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSA9_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 5.330e-22
Identity = 53/104 (50.96%), Postives = 71/104 (68.27%), Query Frame = 3 
Query:    6 ACSASSFMVRAKSFTEAELEILLECERDQVE--QAFCVMGEALGTFHKGMHIPDNIRDLGAVSNTNPAESKHKQHKKGSASSSGRDNMKHIWRTYNDGVALKAL 311
            ACS SSF+VR+ SFT   L  L + + DQV+  Q   VMG ALG+ HKG+HI  N+   G V+N N  E+K+KQ K  + S+SGRDN +H+WRT ND +A++AL
Sbjct:  126 ACSWSSFVVRSPSFTAEGLGTLQKSQIDQVQVKQVTRVMGVALGSIHKGLHIAPNVVVNGVVTNCNVGEAKNKQQKASAPSASGRDNAEHMWRTTNDSLAMQAL 229
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BLAST of mRNA_P-littoralis_Contig678.24.2 vs. uniprot
Match: A0A6H5KR91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR91_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 1.770e-21
Identity = 50/102 (49.02%), Postives = 69/102 (67.65%), Query Frame = 3 
Query:    6 ACSASSFMVRAKSFTEAELEILLECERDQVEQAFCVMGEALGTFHKGMHIPDNIRDLGAVSNTNPAESKHKQHKKGSASSSGRDNMKHIWRTYNDGVALKAL 311
            ACS S F VR++S T     +L + +++QV+QA  V+G ALGT HKG+HI  N+   G V+N N  E+K+K+ K  + S+SGRDN +HIWR  ND  A+KAL
Sbjct:  108 ACSWSCFEVRSQSLTAEGFHVLQQSQQEQVKQATRVIGVALGTIHKGLHIARNVVVNGDVTNCNVEEAKNKELKASAPSASGRDNARHIWRATNDSFAIKAL 209
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BLAST of mRNA_P-littoralis_Contig678.24.2 vs. uniprot
Match: A0A6H5LF20_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LF20_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 4.710e-11
Identity = 39/76 (51.32%), Postives = 49/76 (64.47%), Query Frame = 3 
Query:   90 QVEQAFCVMGEALGTFHKGMHIPDNIRDLGAVSNTNPAESKHKQHKKGSASSSGR--DNMKHIWRTYNDGVALKAL 311
            QV+QA  V G AL + HKG+HI D+IR+LGAV NTN  ES HK  KK    +  R  +N  HI + +ND  ALK+L
Sbjct:   22 QVKQASRVAGLALNSIHKGLHIADDIRNLGAVGNTNAGESNHKDLKKSRRDACLRAGNNEVHIIKNWNDNQALKSL 97
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BLAST of mRNA_P-littoralis_Contig678.24.2 vs. uniprot
Match: A0A6H5JYK1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYK1_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.990e-8
Identity = 31/50 (62.00%), Postives = 36/50 (72.00%), Query Frame = 3 
Query:  165 IRDLGAVSNTNPAESKHKQHKKGSASSSGRDNMKHIWRTYNDGVALKALC 314
             R  GAV N N  ESKHK+ KK + S+SGRDN  HI+RT+ND  ALKALC
Sbjct:   27 FRTKGAVGNANFGESKHKEVKKSATSASGRDNPVHIFRTWNDTQALKALC 76
[Close]
BLAST of mRNA_P-littoralis_Contig678.24.2 vs. uniprot
Match: D7FZI4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI4_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 3.010e-7
Identity = 29/54 (53.70%), Postives = 37/54 (68.52%), Query Frame = 3 
Query:    6 ACSASSFMVRAKSFTEAELEILLECERDQVEQAFCVMGEALGTFHKGMHIPDNI 167
            ACS SSF+VR+ SFT   L  L + + DQV+Q   VMG ALG+ HKG+HI  N+
Sbjct:  350 ACSWSSFVVRSPSFTAEGLRTLQKSQIDQVKQVTRVMGVALGSIHKGLHIARNV 403
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig678.24.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5K975_9PHAE5.760e-2350.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWW9_ECTSI1.470e-2251.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G4Y8_ECTSI1.670e-2250.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FSA9_ECTSI5.330e-2250.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KR91_9PHAE1.770e-2149.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LF20_9PHAE4.710e-1151.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYK1_9PHAE1.990e-862.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZI4_ECTSI3.010e-753.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig678contigP-littoralis_Contig678:39820..41206 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size314
Hectar predicted targeting categoryother localisation
Exons3
Cds size288
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791408.786384-CDS-P-littoralis_Contig678:39819..399561680791408.786384-CDS-P-littoralis_Contig678:39819..39956Pylaiella littoralis U1_48CDSP-littoralis_Contig678 39820..39956 -
1680791408.7973318-CDS-P-littoralis_Contig678:40436..405211680791408.7973318-CDS-P-littoralis_Contig678:40436..40521Pylaiella littoralis U1_48CDSP-littoralis_Contig678 40437..40521 -
1680791408.8081412-CDS-P-littoralis_Contig678:41114..411801680791408.8081412-CDS-P-littoralis_Contig678:41114..41180Pylaiella littoralis U1_48CDSP-littoralis_Contig678 41115..41180 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791408.818745-UTR-P-littoralis_Contig678:41180..412061680791408.818745-UTR-P-littoralis_Contig678:41180..41206Pylaiella littoralis U1_48UTRP-littoralis_Contig678 41181..41206 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig678.24.2prot_P-littoralis_Contig678.24.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig678 39820..41180 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig678.24.2

>prot_P-littoralis_Contig678.24.2 ID=prot_P-littoralis_Contig678.24.2|Name=mRNA_P-littoralis_Contig678.24.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=96bp
MVRAKSFTEAELEILLECERDQVEQAFCVMGEALGTFHKGMHIPDNIRDL
GAVSNTNPAESKHKQHKKGSASSSGRDNMKHIWRTYNDGVALKALC
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mRNA from alignment at P-littoralis_Contig678:39820..41206-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig678.24.2 ID=mRNA_P-littoralis_Contig678.24.2|Name=mRNA_P-littoralis_Contig678.24.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=1387bp|location=Sequence derived from alignment at P-littoralis_Contig678:39820..41206- (Pylaiella littoralis U1_48)
TCACGGCCTGTAGTGCGAGCTCATTCATGGTGCGGGCTAAATCGTTCACG
GAAGCTGAGCTAGAGATTCTGCTGGAATGCGAGAGGGATCAGGTTAGAAA
ATAAATGTACAGGGTGTGGCCGCGGGTTATGGTTATCGAAGGTTGACGAG
AGGATTTTTTTGTTTTTGGCCTGGAAGTATTCTCAGTCGTGGCAATCAGA
GTAACGTTTGTTCCCACCGCGGTGTTGCAACCAGGCCCGCCTCCCGCCGC
TCGGAAACACGATGTATACCCACCTCTTACTTGCTCCAAACACGATACGA
TGCATAGCTTGTGGTCACCCTCTTTGGTTATGCTCATGCGCGAGTTGTCA
CCCCCCGGCAAAAACCGTAGATAAAAGAAAGATTGCGTTTTTTCAAGAGT
CGGAGAAAAATCCGGCAGTAAGCTTCTCCCTGCTCTCAGCAAAACCCCTC
AGTGTATCCCCTGGACCTCTAACTCCCGTAGTCCTTTTCTCTGTCGTCGA
TGTGGGCCAAATGGTTGTTCAGTGGGAAATTGGCACCGTATAATAAACCA
TTGCGTCCATTGTATCCCAGCAATATGGTTTGTGGTACCACTCGGGACCA
ACCCAGTATTCTCGCTCACAACATGTTATTTTTAGAACAACACGAGCCAA
CGCTGCGACGGCATACTCTCTTCGTGGTGCTATAGGTGGAGCAGGCATTT
TGCGTGATGGGAGAAGCCCTAGGCACCTTCCACAAGGGAATGCACATTCC
GGACAACATTCGGGATCTAGGTAGGTCGCATTGTCCCACACAGATATTTT
AGGGGTTCCAGGCGACGTTATTTCAGTAATTGCAGGCCCGCGTAATTTGT
GGCTGTGCTACTATTCAGCCTCGTATTAGAGACCAACTGGTATTTCACAG
CAAGTAGGCACCATAGGCCAATTGACCCCCCCCCCCCGGAGCAATGTAGG
ATACGCTTTTTCACAGAAATAGCACTCTCGCTCCTAGAGGTGGCCCGGGG
TTCTCTTTATTTTGTTCGAAGGTGTCACCGGAGCTGGGATGCAAATATCC
CAATCCGCTACAACCATTGTAGAGTATGTTTGGAACGGCCAAGGTACTCG
TGATTTCATTAGTATTTTTGGTGCGTTACGCTGCATTTTCGCACTGACCC
TCCAAAACCCAAACATTTCGTTCCTGTATTTTTTTCAGGTCTTCTTTAAT
TTTGTTCTAACTTTGTGTGCTCTACCGCCGACTATTATTCTCAATGCCAG
GTGCCGTGTCGAACACCAACCCAGCCGAATCTAAGCACAAGCAACACAAG
AAAGGGTCGGCATCATCTAGCGGCCGGGACAACATGAAGCACATATGGAG
AACGTACAACGATGGCGTCGCGCTGAAGGCGCTGTGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig678:39820..41206-

>mRNA_P-littoralis_Contig678.24.2 ID=mRNA_P-littoralis_Contig678.24.2|Name=mRNA_P-littoralis_Contig678.24.2|organism=Pylaiella littoralis U1_48|type=CDS|length=288bp|location=Sequence derived from alignment at P-littoralis_Contig678:39820..41206- (Pylaiella littoralis U1_48)
ATGGTGCGGGCTAAATCGTTCACGGAAGCTGAGCTAGAGATTCTGCTGGA
ATGCGAGAGGGATCAGGTGGAGCAGGCATTTTGCGTGATGGGAGAAGCCC
TAGGCACCTTCCACAAGGGAATGCACATTCCGGACAACATTCGGGATCTA
GGTGCCGTGTCGAACACCAACCCAGCCGAATCTAAGCACAAGCAACACAA
GAAAGGGTCGGCATCATCTAGCGGCCGGGACAACATGAAGCACATATGGA
GAACGTACAACGATGGCGTCGCGCTGAAGGCGCTGTGC
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