mRNA_P-littoralis_Contig678.14.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig678.14.1
Unique NamemRNA_P-littoralis_Contig678.14.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig678.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig678contigP-littoralis_Contig678:20665..21849 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size528
Hectar predicted targeting categoryother localisation
Exons4
Cds size525
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791408.7106-CDS-P-littoralis_Contig678:20664..208461680791408.7106-CDS-P-littoralis_Contig678:20664..20846Pylaiella littoralis U1_48CDSP-littoralis_Contig678 20665..20846 +
1680791408.7250147-CDS-P-littoralis_Contig678:21032..211701680791408.7250147-CDS-P-littoralis_Contig678:21032..21170Pylaiella littoralis U1_48CDSP-littoralis_Contig678 21033..21170 +
1680791408.7366052-CDS-P-littoralis_Contig678:21347..215191680791408.7366052-CDS-P-littoralis_Contig678:21347..21519Pylaiella littoralis U1_48CDSP-littoralis_Contig678 21348..21519 +
1680791408.752831-CDS-P-littoralis_Contig678:21815..218481680791408.752831-CDS-P-littoralis_Contig678:21815..21848Pylaiella littoralis U1_48CDSP-littoralis_Contig678 21816..21848 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig678.14.1prot_P-littoralis_Contig678.14.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig678 20665..21848 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig678.14.1

>prot_P-littoralis_Contig678.14.1 ID=prot_P-littoralis_Contig678.14.1|Name=mRNA_P-littoralis_Contig678.14.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=175bp
WVKAVEGTSAEARQALREISNSSEKSVVPDTITVKLLSHEDFGKHLSTPV
MQEMYLQLFARWQKRSGQKPLSSDFKTIEAQARKVTEFVQQVREVVPHEK
WTRELTEEVSKIAFKNGSWHDLYVEPHDIKCRREFAELAAKVRKKLPESV
RVAIMSKPVPRLEKILRADPTLQQY
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mRNA from alignment at P-littoralis_Contig678:20665..21849+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig678.14.1 ID=mRNA_P-littoralis_Contig678.14.1|Name=mRNA_P-littoralis_Contig678.14.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1185bp|location=Sequence derived from alignment at P-littoralis_Contig678:20665..21849+ (Pylaiella littoralis U1_48)
TGGGTAAAAGCGGTGGAGGGAACATCGGCAGAGGCTCGCCAAGCTCTACG
CGAAATCTCGAACTCCTCGGAGAAATCTGTCGTTCCCGATACCATCACGG
TGAAGTTACTATCTCACGAAGACTTTGGCAAGCACCTGTCGACTCCGGTT
ATGCAGGAGATGTATCTTCAACTCTTCGCAAGGTATGTACAAAAATGAGG
TCCAAATCTACCAGTCGATCCGTCGAGACGCAAGGGTATTCCGCAAACGA
ATGTACATGTTTCCTTTGTGCGGTTGTACCTCGCACCATGGAAGGTGTTG
ACAGTTGAACAAGCAGCACACCACACGTTCTGTCATCAGATTTCATTGCC
GAATTGCCACGTCATCAGGTGGCAGAAGCGAAGCGGACAAAAACCACTCT
CTTCCGATTTCAAGACAATCGAAGCACAAGCACGAAAGGTGACGGAGTTC
GTGCAGCAGGTTCGAGAGGTCGTCCCGCACGAAAAATGGACGCGGGAGCT
CACCGAGTGAGACTTGTTTTTATTGTATACCATAAATACAAAAAATAACG
ACACATCCGTAGACCGCATGTTGGAACACCGGGATAATAATGTAAGATTC
ACTGAAGGTAGCGCATCGAGGTAGCGCATCTTTCGGAGCAGTTAACCGAT
TTTACAGCTTGTTGTATCCCTGCTTACTCACAGGGAGGTTTCCAAGATCG
CATTCAAGAACGGTAGCTGGCACGACCTCTACGTGGAGCCCCACGACATC
AAGTGCCGACGAGAGTTCGCTGAACTTGCGGCAAAAGTACGCAAAAAGCT
GCCAGAGTCCGTTAGAGTCGCGATCATGTCAAAGCCTGTCCCACGCTTGG
AAAAGGTGATGATGTTCGTGGATATTCATGCGTGGCTATGCAGTATGATG
ACGCCCACATATATACGTATGACAAAGAAGAGGGGTTTTATACGAAGCAC
TTCGCATGCCATCACCATCGGCCGTTTCAGGCCTCAATAATTTTCTCCCA
AACAATCTTCCGGGCCTCTTAAGCACCTGTTAGTTCCCGCCCCCTACTCC
CACCACGACAGACACACACAGACACAATGTGTCTGTCTGCATGAATAAAC
TAAGGCTGACATCGTATGAATATACATAACAATTTATCCTTGCGCGAGCA
GATCCTTAGAGCTGACCCCACGCTTCAGCAGTACC
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Coding sequence (CDS) from alignment at P-littoralis_Contig678:20665..21849+

>mRNA_P-littoralis_Contig678.14.1 ID=mRNA_P-littoralis_Contig678.14.1|Name=mRNA_P-littoralis_Contig678.14.1|organism=Pylaiella littoralis U1_48|type=CDS|length=525bp|location=Sequence derived from alignment at P-littoralis_Contig678:20665..21849+ (Pylaiella littoralis U1_48)
TGGGTAAAAGCGGTGGAGGGAACATCGGCAGAGGCTCGCCAAGCTCTACG
CGAAATCTCGAACTCCTCGGAGAAATCTGTCGTTCCCGATACCATCACGG
TGAAGTTACTATCTCACGAAGACTTTGGCAAGCACCTGTCGACTCCGGTT
ATGCAGGAGATGTATCTTCAACTCTTCGCAAGGTGGCAGAAGCGAAGCGG
ACAAAAACCACTCTCTTCCGATTTCAAGACAATCGAAGCACAAGCACGAA
AGGTGACGGAGTTCGTGCAGCAGGTTCGAGAGGTCGTCCCGCACGAAAAA
TGGACGCGGGAGCTCACCGAGGAGGTTTCCAAGATCGCATTCAAGAACGG
TAGCTGGCACGACCTCTACGTGGAGCCCCACGACATCAAGTGCCGACGAG
AGTTCGCTGAACTTGCGGCAAAAGTACGCAAAAAGCTGCCAGAGTCCGTT
AGAGTCGCGATCATGTCAAAGCCTGTCCCACGCTTGGAAAAGATCCTTAG
AGCTGACCCCACGCTTCAGCAGTAC
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