mRNA_P-littoralis_Contig678.13.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig678.13.1
Unique NamemRNA_P-littoralis_Contig678.13.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig678.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig678contigP-littoralis_Contig678:19389..20426 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size457
Hectar predicted targeting categoryother localisation
Exons2
Cds size453
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791408.6471534-UTR-P-littoralis_Contig678:19388..193901680791408.6471534-UTR-P-littoralis_Contig678:19388..19390Pylaiella littoralis U1_48UTRP-littoralis_Contig678 19389..19390 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791408.6589866-CDS-P-littoralis_Contig678:19390..197211680791408.6589866-CDS-P-littoralis_Contig678:19390..19721Pylaiella littoralis U1_48CDSP-littoralis_Contig678 19391..19721 +
1680791408.6697075-CDS-P-littoralis_Contig678:20304..204261680791408.6697075-CDS-P-littoralis_Contig678:20304..20426Pylaiella littoralis U1_48CDSP-littoralis_Contig678 20305..20426 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig678.13.1prot_P-littoralis_Contig678.13.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig678 19391..20426 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig678.13.1

>prot_P-littoralis_Contig678.13.1 ID=prot_P-littoralis_Contig678.13.1|Name=mRNA_P-littoralis_Contig678.13.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=151bp
MLEQNFAGVHDIVISRVRETAFIREASGGGVKRMAQSMRERGYIKHDSLP
SVVIPRTTNIAANGVPEGAFILNGNLRLKAAKLVFGEDFKMSFAVYYDFE
KPCDRKAAACVLQSAAEELQPRTIYDNFYFWCDFLTDLPKPDYPHVKQAF
E
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mRNA from alignment at P-littoralis_Contig678:19389..20426+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig678.13.1 ID=mRNA_P-littoralis_Contig678.13.1|Name=mRNA_P-littoralis_Contig678.13.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1038bp|location=Sequence derived from alignment at P-littoralis_Contig678:19389..20426+ (Pylaiella littoralis U1_48)
CAATGCTTGAGCAGAATTTTGCAGGGGTGCATGACATCGTCATCTCCCGT
GTGAGAGAGACCGCTTTCATCCGAGAGGCTTCGGGGGGAGGAGTGAAACG
CATGGCTCAATCAATGAGGGAACGCGGATATATCAAACACGACTCTTTGC
CATCGGTGGTCATCCCGCGTACGACCAATATTGCAGCAAATGGTGTACCG
GAAGGAGCCTTCATTCTCAATGGAAACCTCAGGCTGAAAGCGGCAAAACT
GGTGTTTGGCGAAGATTTCAAGATGTCTTTCGCTGTTTACTACGACTTTG
AAAAACCATGTGACCGGAAAGCAGCGGCCTGCGGTGAGAAATGCTCCACT
TTGGCTGTTTTTCAGTAAGACCTACCGGTACTCAGCTGGAATAAACGTAC
GTCAACATCTCCTGAAAGTGAGGTTCATCACCGTGAGCCCTTCGAGTATA
CAAAACTCATCGACGTGAAACATTACCGCCGTTCGAATCCTGCAAGAAGC
AATAAGAAGGGCGTGTTTTCAATGATGAGGCTTGTTCAGAGAGCGCGAGC
ACGAACCACGTACGTAGGCGTAGTATTGATTCCTCGTTACACTGTTGCTG
CATGTTTCCGGTATTTTTCACACGAAGCATGCTCCATACTGAAAAAAATA
CTTGAAGGTCATTTGTCCGTTCACAGACGCACCCAGCTTTCAACCAGCAC
ATATGCACATCACGCCAGTCCATTCAACAAACCTTAACGTAAATATGAGG
TACCCAAATATATATTAACAACCAGAATTTGCCCGTCGAAACATATCAAG
AACTATTAGTTAGGATCGGTAATCGTCCAGCTGCAAAAGTCGCGATAACC
ACCGACTCATTCAACACTTTATTTGCGCGCTTTTGTACATGACATGTAAA
CTAATATGCGTCACAGTCCTCCAAAGTGCTGCGGAAGAGCTCCAGCCTCG
CACCATCTACGACAACTTCTACTTCTGGTGTGATTTCCTGACAGACTTGC
CCAAGCCCGATTACCCGCATGTGAAGCAAGCTTTCGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig678:19389..20426+

>mRNA_P-littoralis_Contig678.13.1 ID=mRNA_P-littoralis_Contig678.13.1|Name=mRNA_P-littoralis_Contig678.13.1|organism=Pylaiella littoralis U1_48|type=CDS|length=453bp|location=Sequence derived from alignment at P-littoralis_Contig678:19389..20426+ (Pylaiella littoralis U1_48)
ATGCTTGAGCAGAATTTTGCAGGGGTGCATGACATCGTCATCTCCCGTGT
GAGAGAGACCGCTTTCATCCGAGAGGCTTCGGGGGGAGGAGTGAAACGCA
TGGCTCAATCAATGAGGGAACGCGGATATATCAAACACGACTCTTTGCCA
TCGGTGGTCATCCCGCGTACGACCAATATTGCAGCAAATGGTGTACCGGA
AGGAGCCTTCATTCTCAATGGAAACCTCAGGCTGAAAGCGGCAAAACTGG
TGTTTGGCGAAGATTTCAAGATGTCTTTCGCTGTTTACTACGACTTTGAA
AAACCATGTGACCGGAAAGCAGCGGCCTGCGTCCTCCAAAGTGCTGCGGA
AGAGCTCCAGCCTCGCACCATCTACGACAACTTCTACTTCTGGTGTGATT
TCCTGACAGACTTGCCCAAGCCCGATTACCCGCATGTGAAGCAAGCTTTC
GAG
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