mRNA_P-littoralis_Contig678.6.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig678.6.1 vs. uniprot
Match: A0A6H5L7Q2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Q2_9PHAE) HSP 1 Score: 239 bits (609), Expect = 1.270e-67 Identity = 144/340 (42.35%), Postives = 189/340 (55.59%), Query Frame = 2
Query: 2 VMFRKWGGFGLYKLARACGCYDKKLEGKNYHKRHFAFVAMLEALWNACTSEVNHLPDEGPGLEGRAVSPGERLLR*LKFFLDGKKHKTFGQWVD------LPATVWHISRCTQVFAWATSSCAKLQSEWSDLFLAYNKNLYHALSIHHLVDIARLSENERAFATAITSLSLKGNVGKNSGLDEIQEMTFNLYMNVMATRLNIDYLSSLSLTLQCKSQSVATFETEFDCGLSRKRKLLGNARRKRAVGFMYSELRRDGSPFRLDNKEGEEKIVAQDGRVAKLNLEEALLRARATSEKMFRDGVCNLVPDVRRLPGDGQGMA-KRVKLPTFSDGIAKKIRSQ 1000
V+FRKWGGF L LA+A CYDKKLEGKNYHKRH FV LEALW AC EV P G G +S E L L + + KHKTFGQW D + +I T F ++ K+ + LFL YNKNL HAL I HL DIARLS ER F + SLS G GKN+GLDEIQEMT N + AT ++ YL L+LTLQ + + + RK+ + R++ V +++ L +GSPF+L +++G + I++ DGRVA +LE ++ A + S M R GV + G + A KRVKL TF+ G KK +++
Sbjct: 191 VLFRKWGGFALIPLAKAADCYDKKLEGKNYHKRHNFFVGFLEALWRACIGEVKETPQSG----GMRLSDEELLANLLGYRDNQTKHKTFGQWADFLLSDGMAYLAVYIGIRTGDFDLREAAIRKI----APLFLGYNKNLCHALCIQHLADIARLSPAERLFISETFSLSRSGKPGKNTGLDEIQEMTMNKDIKQAATGTDVRYLQRLNLTLQTLPTVAREVKEMYGSSVIYNRKIYASDHRRKIVDKIHASLVAEGSPFKLRDEKGAQSIISADGRVALAHLESTMMEAGSKSVDMCRRGVLETFEEELGPGGQAKDAARKRVKLATFNTGTEKKTKTR 522
BLAST of mRNA_P-littoralis_Contig678.6.1 vs. uniprot
Match: A0A6H5KQE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQE5_9PHAE) HSP 1 Score: 217 bits (553), Expect = 1.570e-58 Identity = 133/329 (40.43%), Postives = 178/329 (54.10%), Query Frame = 2
Query: 2 VMFRKWGGFGLYKLARACGCYDKKLEGKNYHKRHFAFVAMLEALWNACTSEVNHLPDEGPGLEGRAVSPGERLLR*LKFFLDGKKHKTFGQWVDLPAT------VWHISRCTQVFAWATSSCAKLQSEWSDLFLAYNKNLYHALSIHHLVDIARLSENERAFATAITSLSLKGNVGKNSGLDEIQEMTFNLYMNVMATRLNIDYLSSLSLTLQCKSQSVATFETEFDCGLSRKRKLLGNARRKRAVGFMYSELRRDGSPFRLDNKEGEEKIVAQDGRVAKLNLEEALLRARATSEKMFRDGVCNLVPDVRRLPGDGQGMAKRVKLPTFS 970
VMF KWGGFG+ LA+ CY+ KLE ++YH RH FV +LEA+W AC SEV G A+S + + L + D KHKTFGQWV++ +I F ++ ++ + LFL YNK YH L I HL DI R+S ER+F + SLSL G GKN+GLDEIQEMT N AT I YL L LTLQ +++V F+ F + RK+ +A R R+V M L + SPFRL ++ G +I++ DGR A LEE++L A T +M+ +GV + D K+V+LPTFS
Sbjct: 352 VMFLKWGGFGIIPLAKLSDCYNNKLEKRDYHNRHNVFVGVLEAVWKACISEVG-------GSSASAMSNEQVIAELLVYTTDRTKHKTFGQWVEMLLVDGMAYLALYIGIRIGDFDLREAALRRI----APLFLGYNKYKYHDLCIKHLADICRMSPAERSFMSETFSLSLSGTPGKNTGLDEIQEMTMNKEYKGAATGTEIGYLQKLGLTLQRFARAVQDFKQAFGSSVVYNRKIYASAHRTRSVEKMCEILTDEESPFRLQSESGRTEIISADGRTALKVLEESMLAAPETLAQMWENGVKGEYVQLNPDRSDRDAPRKQVRLPTFS 669
BLAST of mRNA_P-littoralis_Contig678.6.1 vs. uniprot
Match: A0A6H5KRV8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRV8_9PHAE) HSP 1 Score: 209 bits (531), Expect = 7.890e-56 Identity = 132/321 (41.12%), Postives = 172/321 (53.58%), Query Frame = 2
Query: 47 RACGCYDKKLEGKNYHKRHFAFVAMLEALWNACTSEVNHLPDEGPGLEGRAVSPGERLLR*LKFFLDGKKHKTFGQWVD------LPATVWHISRCTQVFAWATSSCAKLQSEWSDLFLAYNKNLYHALSIHHLVDIARLSENERAFATAITSLSLKGNVGKNSGLDEIQEMTFNLYMNVMATRLNIDYLSSLSLTLQCKSQSVATFETEFDCGLSRKRKLLGNARRKRAVGFMYSELRRDGSPFRLDNKEGEEKIVAQDGRVAKLNLEEALLRARATSEKMFRDGVCNLVPDVRRLPGDGQGMA-KRVKLPTFSDGIAKK 988
+A CYDKKLEGKNYHK H FV LEALW C EV G G +S E L + D KHKTFGQW D + +I T F ++ K+ + LFL YNKNLYHAL I HL DIARLS ER F + SLSL G GKN+GLDEIQEMT N + AT ++ YL L+LTLQ S + + + RK+ + R++ + +++ L +GSPF+L +++G + I++ DGRVA +LE ++ A + S MFR G + G + KRVKL TFS G KK
Sbjct: 370 KAADCYDKKLEGKNYHKWHNFFVGFLEALWRGCIGEVKETSQSG----GMRLSDEEPLANLPGYRDDQTKHKTFGQWADFLLSDGMAYLAVYIGIQTGDFDLREAAIRKI----APLFLGYNKNLYHALCIRHLADIARLSPAERLFISETFSLSLSGKPGKNTGLDEIQEMTMNKDVKQAATGTDVRYLERLTLTLQTLSTVAREVKEMYGSSVIYNRKIYASDHRRK-IDKIHASLVAEGSPFKLRDEQGTQSIISADGRVALAHLESTMMEAGSKSVDMFRRGALETFEEELGPGGQAKDATRKRVKLATFSTGTEKK 681
BLAST of mRNA_P-littoralis_Contig678.6.1 vs. uniprot
Match: A0A6H5KGL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGL9_9PHAE) HSP 1 Score: 201 bits (512), Expect = 1.010e-53 Identity = 125/301 (41.53%), Postives = 164/301 (54.49%), Query Frame = 2
Query: 2 VMFRKWGGFGLYKLARACGCYDKKLEGKNYHKRHFAFVAMLEALWNACTSEVN--HLPDEGPGLEGRAVSPGERLLR*LKFFLDGKKHKTFGQWVDL------PATVWHISRCTQVFAWATSSCAKLQSEWSDLFLAYNKNLYHALSIHHLVDIARLSENERAFATAITSLSLKGNVGKNSGLDEIQEMTFNLYMNVMATRLNIDYLSSLSLTLQCKSQSVATFETEFDCGLSRKRKLLGNARRKRAVGFMYSELRRDGSPFRLDNKEGEEKIVAQDGRVAKLNLEEALLRARATSEKMFR 880
V+FRKWGGF + L +A Y KKLE KNYHKRHFAF +LEALW AC E+ H D G E LL L + KHKTFGQW +L +IS F ++ ++ + LFL YNKNLYHAL+I HL DIA L +ER F + SLSL GN GKN GLDEIQEMT N + A ++ YL L+LTLQ + + ++ F +RKL + R V ++ L GSP +L +++G +++ DG +A +LE+ +LRAR T M R
Sbjct: 536 VLFRKWGGFCVIPLTKAADAYTKKLESKNYHKRHFAFTGILEALWRACVGEIKSQHSTDGPMG--------AEELLGRLVQYRGSTKHKTFGQWAELLLDDGMAYLAVYISIRVGDFDLREAAIRQI----APLFLDYNKNLYHALTIQHLADIANLRPSEREFLRGMFSLSLAGNPGKNVGLDEIQEMTMNKEIKQAAHGTDVRYLQRLALTLQTMNNAARAWKESFGSIGVYERKLHASHHRTILVKKVFDILTAAGSPIKLTDEKGRLSVISADGGIALPHLEKRMLRARETLTSMIR 824
BLAST of mRNA_P-littoralis_Contig678.6.1 vs. uniprot
Match: A0A6H5JPG5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPG5_9PHAE) HSP 1 Score: 172 bits (437), Expect = 7.270e-47 Identity = 104/253 (41.11%), Postives = 136/253 (53.75%), Query Frame = 2
Query: 2 VMFRKWGGFGLYKLARACGCYDKKLEGKNYHKRHFAFVAMLEALWNACTSEVNHLPDEGPGLEGRAVSPGERLLR*LKFFLDGKKHKTFGQWVDLPAT------VWHISRCTQVFAWATSSCAKLQSEWSDLFLAYNKNLYHALSIHHLVDIARLSENERAFATAITSLSLKGNVGKNSGLDEIQEMTFNLYMNVMATRLNIDYLSSLSLTLQCKSQSVATFETEFDCGLSRKRKLLGNARRKRAVGFMYSEL 742
V+FRKWGGF L LA+A CYDKKLEGK YHKRH FV LEAL AC EV G G ++ E L L + +D KHKTFGQW DL + +I T+ F ++ K+ + LFL YNKNLYHAL I +L DIARLS ER F + SLSL + NSGL EIQ+M + T ++ +L L+LTLQ S + + + RK+ + R++ V +++ L
Sbjct: 64 VLFRKWGGFALIPLAKAADCYDKKLEGKTYHKRHHFFVGFLEALRQACIGEVKEASQPGGG----RLADEELLANLLGYRIDRTKHKTFGQWADLLLSDGMAYLAVYIGIRTEDFDLREAAIRKI----APLFLGYNKNLYHALCIQYLADIARLSPAERLFISETFSLSLSEKLSNNSGLGEIQKMIMTKDIKQAPTGTDVRHLQRLTLTLQTLSTVAREVKEMYGSSVIYNRKIYASGHRRKIVDRIHASL 308
BLAST of mRNA_P-littoralis_Contig678.6.1 vs. uniprot
Match: A0A6H5L2D3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2D3_9PHAE) HSP 1 Score: 175 bits (444), Expect = 2.620e-45 Identity = 108/265 (40.75%), Postives = 142/265 (53.58%), Query Frame = 2
Query: 2 VMFRKWGGFGLYKLARACGCYDKKLEGKNYHKRHFAFVAMLEALWNACTSEVNHLPDEGPGLEGRAVSPGERLLR*LKFFLDGKKHKTFGQWVDLPAT--VWHISRCTQVFAWATSSCAKLQSEWSDLFLAYNKNLYHALSIHHLVDIARLSENERAFATAITSLSLKGNVGKNSGLDEIQEMTFNLYMNVMATRLNIDYLSSLSLTLQCKSQSVATFETEFDCGLSRKRKLLGNARRKRAVGFMYSELRRDGSPFRLDNKEGEE 790
VMF KWGGFG+ LA+ CY+ KLE K+YH RH F+ ++EA W AC +EV G A++ + L L + D KHKT GQWV++ + +++ F ++ K+ + LFL YNK YH I HL DI R+S ER+F + SLSL G GKN+ LDEIQEMT N AT +I YL L LTLQ + SV F+ F L RK+ +A R +V M L + SPFRL + G E
Sbjct: 352 VMFLKWGGFGIMPLAKRSDCYNNKLEKKDYHNRHNVFIGIMEAAWRACVAEVG-------GSSAPAMTDDDVLNELLGYRTDRTKHKTCGQWVEMLLVDGMAYLALYIGDFDLREAALRKI----APLFLGYNKYKYHDSCIKHLADICRMSPTERSFMSKTFSLSLSGVPGKNTSLDEIQEMTMNKDFKGAATGTDIRYLQKLGLTLQLFACSVQDFKEVFGSKLVYNRKIYASAHRTMSVRKMVEVLTAEESPFRLQSACGRE 605
BLAST of mRNA_P-littoralis_Contig678.6.1 vs. uniprot
Match: A0A6H5JCT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCT7_9PHAE) HSP 1 Score: 150 bits (379), Expect = 2.350e-36 Identity = 100/284 (35.21%), Postives = 131/284 (46.13%), Query Frame = 2
Query: 2 VMFRKWGGFGLYKLARACGCYDKKLEGKNYHKRHFAFVAMLEALWNACTSEVNHLPDEGPGLEGRAVSPGERLLR*LKFFLDGKKHKTFGQWVDLPATVWHISRCTQVFAWATSSCAKLQSEWSDLFLAYNKNLYHALSIHHLVDIARLSENERAFATAITSLSLKGNVGKNSGLDEIQEMTFNLYMNVMATRLNIDYLSSLSLTLQCKSQSVATFETEFDCGLSRKRKLLGNARRKRAVGFMYSELRRDGSPFRLDNKEGEEKIVAQDGRVAKLNLEEALLRA 853
V++RKWGGF + LA+A C+DKKLE KNYHKRH FV ++EA+W AC SEVN D A+S + L L + D KHKT GQW++ + E F SLSL G GKN+GLDEIQEMT N AT +I YL L LTLQ ++ F+ F + R + + R V M+ + +GSPFRL + +G +I++ GRVA LEE +L A
Sbjct: 356 VLYRKWGGFAMIPLAKASDCHDKKLESKNYHKRHNVFVGVVEAVWQACISEVNVQQDT-------ALSGEDLLDNLLAYTTDRGKHKTHGQWMN--------------------------------------------------------DAEVEFTRETFSLSLAGIPGKNTGLDEIQEMTMNKEFKQAATGTDIAYLQRLCLTLQLFARCAEDFKLAFGSSIVYNRTIKASEHRIVQVSKMFQSVTAEGSPFRLCDDKGASEIISAGGRVALERLEETMLDA 576
BLAST of mRNA_P-littoralis_Contig678.6.1 vs. uniprot
Match: A0A6H5JBA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA3_9PHAE) HSP 1 Score: 112 bits (281), Expect = 4.960e-23 Identity = 71/175 (40.57%), Postives = 97/175 (55.43%), Query Frame = 2
Query: 446 LSENERAFATAITSLSLKGNVGKNSGLDEIQEMTFNLYMNVMATRLNIDYLSSLSLTLQCKSQSVATFETEFDCGLSRKRKLLGNARRKRAVGFMYSELRRDGSPFRLDNKEGEEKIVAQDGRVAKLNLEEALLRARATSEKMFRDGVCNLVPDVRRLPGDGQGMAKRVKLPTFS 970
+S ER+F + SLSL G GKN+GLDEIQEMT N AT I YL L LTLQ +++V F+ F + RK+ +A R R+V M L + SPFRL ++ G +I++ DGR A LEE++L A T +M+ +GV + D K+V+LPTFS
Sbjct: 1 MSPAERSFMSETFSLSLSGTPGKNTGLDEIQEMTMNKEYKGAATGTEIGYLQKLGLTLQRFARAVQDFKQAFGSSVVYNRKIYASAHRTRSVEKMCEILTDEESPFRLQSESGRTEIISADGRTALKVLEESMLAAPETLAQMWENGVKGEYVQLNPDRSDRDAPRKQVRLPTFS 175 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig678.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig678.6.1 >prot_P-littoralis_Contig678.6.1 ID=prot_P-littoralis_Contig678.6.1|Name=mRNA_P-littoralis_Contig678.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=158bp MTFNLYMNVMATRLNIDYLSSLSLTLQCKSQSVATFETEFDCGLSRKRKLback to top mRNA from alignment at P-littoralis_Contig678:6803..8091- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig678.6.1 ID=mRNA_P-littoralis_Contig678.6.1|Name=mRNA_P-littoralis_Contig678.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1289bp|location=Sequence derived from alignment at P-littoralis_Contig678:6803..8091- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig678:6803..8091- >mRNA_P-littoralis_Contig678.6.1 ID=mRNA_P-littoralis_Contig678.6.1|Name=mRNA_P-littoralis_Contig678.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=474bp|location=Sequence derived from alignment at P-littoralis_Contig678:6803..8091- (Pylaiella littoralis U1_48)back to top |