mRNA_P-littoralis_Contig678.2.2 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig678.2.2 vs. uniprot
Match: A0A6H5K049_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K049_9PHAE) HSP 1 Score: 187 bits (474), Expect = 8.760e-51 Identity = 91/150 (60.67%), Postives = 110/150 (73.33%), Query Frame = 1
Query: 1774 VEALVAEVRIEGVVLDMYGGREDAVAVILGTSCTVATNDVRTRRGVDTNPDASAPTFAQEYLASG-AQQPDWVVTSPPYKGAINFVKGAMEVARYGVALKLPLSFMEPCGDRGVWLQRNPPSICVFLRRVRYTPAHVMVGEFWGVWYKAG 2220
+EAL+ V I G VLDM GG +DAVA+ L +C V TNDV R TN DAS+ +F ++LA+ QQPDW+VTSPPYKGA+ FVK A+ VA+ GVALKLPLSF+EPC DR WLQ NPP++C+ + R RY PAHV VGEFWGVWY G
Sbjct: 78 LEALLGVVSISGCVLDMCGGTDDAVAIRLRDTCQVLTNDVGPRLSPATNLDASSASFTDDFLAAHHGQQPDWIVTSPPYKGALAFVKAALTVAKKGVALKLPLSFLEPCADRAGWLQANPPALCMMMSRARYQPAHVRVGEFWGVWYPPG 227
BLAST of mRNA_P-littoralis_Contig678.2.2 vs. uniprot
Match: A0A6H5KHQ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHQ4_9PHAE) HSP 1 Score: 183 bits (465), Expect = 1.180e-48 Identity = 100/171 (58.48%), Postives = 120/171 (70.18%), Query Frame = 1
Query: 1771 AVEALVAEVRIEGVVLDMYGGREDAVAVILGTSCTVATNDVRTR------RGVDTNPDASAPTFAQEYLASG-AQQPDWVVTSPPYKGAINFVKGAMEVARYGVALKLPLSFMEPCGDRGVWLQRNPPSICVFLRRVRYTPAHVMVGEFWGVWYKAGVGERV----TRLVY 2250
AVEAL+ V + G VLDM GG +DAVA L +C V TNDV +R R DT+ DAS TFA E+LA G QQP+ VV SPPYKGA+ FVK A+ VA++GVALK LSF+EPC DR WL+ NPP++CVFLRR YTP HVM+GEFWGVWY G G+R T+LV+
Sbjct: 125 AVEALLDAVNVSGRVLDMCGGPDDAVARKLRDTCEVVTNDVSSRLSSDARRAPDTSLDASKSTFAAEFLADGFQQQPERVVASPPYKGAVKFVKAALCVAKHGVALKRSLSFLEPCVDRADWLEANPPTVCVFLRRASYTPEHVMMGEFWGVWYCTG-GDRTAVGGTKLVF 294
BLAST of mRNA_P-littoralis_Contig678.2.2 vs. uniprot
Match: A0A6H5JUK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK3_9PHAE) HSP 1 Score: 180 bits (457), Expect = 1.810e-47 Identity = 98/166 (59.04%), Postives = 115/166 (69.28%), Query Frame = 1
Query: 1771 AVEALVAEVRIEGVVLDMYGGREDAVAVILGTSCTVATNDVRTRRGVDTNPDASAPTFAQEYL-ASGAQQPDWVVTSPPYKGAINFVKGAMEVARYGVALKLPLSFMEPCGDRGVWLQRNPPSICVFLRRVRYTPAH-VMVGEFWGVWYKAG--VGERV-TRLVYC 2253
AVE L V I G VLDM GG EDAVA ++C V TNDV +R TN DAS +F + A+ +QPDWVVTSPPYKGA+ FVK A+ VA GVALKLPLSF+EPC DRG WL NPP++C+FLRR +YT AH V VGEFWGVWY G G+ +RLV+C
Sbjct: 135 AVEVLQNAVAIAGCVLDMCGGPEDAVAQGFRSTCEVLTNDVSSRLSAGTNLDASLLSFRDNFRKANPGKQPDWVVTSPPYKGAVGFVKAALAVATKGVALKLPLSFLEPCADRGGWLVDNPPAVCIFLRRAKYTHAHHVKVGEFWGVWYTDGGCCGKSGGSRLVFC 300
BLAST of mRNA_P-littoralis_Contig678.2.2 vs. uniprot
Match: D8LSI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI1_ECTSI) HSP 1 Score: 161 bits (408), Expect = 1.200e-42 Identity = 80/147 (54.42%), Postives = 102/147 (69.39%), Query Frame = 1
Query: 1822 MYGGREDAVAVILGTSCTVATNDVRTRRGVDTNPDASAPTFAQEYLAS-GAQQPDWVVTSPPYKGAINFVKGAMEVARYGVALKLPLSFMEPCGDRGVWLQRNPPSICVFLRRVRYTPAH-VMVGEFWGVWYKAGVGERV-TRLVYC 2253
M GG DAVA L ++C + TNDV + R DTN +AS F +++LA+ ++P+WVVTSPPY A+ FVK AM +A GVA K+P+ F+EPC DRG WLQ NPPS+CVFLRR +YT A+ GEFWGVWY + R TRLV+C
Sbjct: 1 MCGGPTDAVATRLRSTCEILTNDVSSGRPADTNLNASLELFPEDFLAAYSGKRPEWVVTSPPYSRALTFVKAAMSLATKGVAFKMPIFFLEPCADRGGWLQTNPPSVCVFLRRAKYTRANNAKTGEFWGVWYPQEMSCRNRTRLVFC 147
BLAST of mRNA_P-littoralis_Contig678.2.2 vs. uniprot
Match: D7G0Y0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Y0_ECTSI) HSP 1 Score: 162 bits (409), Expect = 4.340e-42 Identity = 84/164 (51.22%), Postives = 109/164 (66.46%), Query Frame = 1
Query: 1771 AVEALVAEVRIEGVVLDMYGGREDAVAVILGTSCTVATNDVRTRRGVDTNPDASAPTFAQEYLAS-GAQQPDWVVTSPPYKGAINFVKGAMEVARYGVALKLPLSFMEPCGDRGVWLQRNPPSICVFLRRVRYTPAH-VMVGEFWGVWYKAGVGERV-TRLVYC 2253
A++A + V I G VLDM GG DAVA L ++C + TNDV + R DTN DAS +F +++LA+ ++P+WV TSPPY A+ FVK AM +A GV K+ + F+EPC D G WLQ NPPS+CVFLRR +YT A+ EFWGVWY + R TRLV+C
Sbjct: 36 AMDASLGAVDITGCVLDMCGGPTDAVATRLRSTCEILTNDVSSGRPADTNLDASLESFPEDFLAAYSGKRPEWVATSPPYSRALTFVKAAMSLATKGVTFKMHIFFLEPCADWGGWLQTNPPSLCVFLRRAKYTRANNAKTSEFWGVWYTQEMSCRNRTRLVFC 199
BLAST of mRNA_P-littoralis_Contig678.2.2 vs. uniprot
Match: A0A6H5KAM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM1_9PHAE) HSP 1 Score: 159 bits (401), Expect = 6.500e-42 Identity = 71/109 (65.14%), Postives = 85/109 (77.98%), Query Frame = 1
Query: 1912 DTNPDASAPTFAQEYLAS-GAQQPDWVVTSPPYKGAINFVKGAMEVARYGVALKLPLSFMEPCGDRGVWLQRNPPSICVFLRRVRYTPAHVMVGEFWGVWYKAGVGERV 2235
DTN DAS+ ++A +YLA+ QQPDWVV SPPYKGA++FVK A+ VA+ GVALKLPLSF+EPC DR WLQ NPPS+C+ + R RY PAHV VGEFWGVWY G G +
Sbjct: 13 DTNLDASSTSYADDYLAAHNGQQPDWVVASPPYKGALSFVKAALTVAKEGVALKLPLSFLEPCADRAGWLQENPPSLCMMMSRARYQPAHVRVGEFWGVWYPPGGGSSI 121
BLAST of mRNA_P-littoralis_Contig678.2.2 vs. uniprot
Match: A0A6H5JT40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT40_9PHAE) HSP 1 Score: 149 bits (375), Expect = 2.520e-38 Identity = 70/111 (63.06%), Postives = 84/111 (75.68%), Query Frame = 1
Query: 1900 RRGVDTNPDASAPTFAQEYLAS-GAQQPDWVVTSPPYKGAINFVKGAMEVARYGVALKLPLSFMEPCGDRGVWLQRNPPSICVFLRRVRYTPAHVMVGEFWGVWYKAGVGE 2229
R DTN DAS+ +FA +YLA+ QQPDWVV+SPPY+GA+ FVK A+ VA+ GVALKLPLSF+EPC DR VWLQ NPP++C+ + R RY PA V VGEF GVWY G G
Sbjct: 10 RLSPDTNLDASSASFADDYLAAHNGQQPDWVVSSPPYEGALAFVKAALTVAKEGVALKLPLSFLEPCADRAVWLQANPPALCMMMSRARYQPALVRVGEFRGVWYPPGSGS 120
BLAST of mRNA_P-littoralis_Contig678.2.2 vs. uniprot
Match: D7FJU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJU4_ECTSI) HSP 1 Score: 152 bits (383), Expect = 2.890e-38 Identity = 78/132 (59.09%), Postives = 95/132 (71.97%), Query Frame = 1
Query: 1771 AVEALVAEVRIEGVVLDMYGGREDAVAVILGTSCTVATNDVRTRRGV-----DTNPDASAPTFAQEYL-ASGAQQPDWVVTSPPYKGAINFVKGAMEVARYGVALKLPLSFMEPCGDRGVWLQRNPPSICVF 2148
AVEAL+ V +EG VLDM GG DA+A LG +C V TND+ TR DTN DAS +FA ++L A Q+PDWV+TSPPYKGA+ +VK A+ +A GVALKLPLSF+EPC DRG WLQ NPP++CVF
Sbjct: 89 AVEALLGAVELEGCVLDMCGGPGDAIATRLGATCKVVTNDISTRLSPGGLPPDTNLDASLASFAVDFLLAKPGQRPDWVLTSPPYKGALEYVKSALSLAAKGVALKLPLSFLEPCADRGGWLQANPPAVCVF 220
BLAST of mRNA_P-littoralis_Contig678.2.2 vs. uniprot
Match: A0A6H5JSV3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSV3_9PHAE) HSP 1 Score: 150 bits (378), Expect = 3.360e-38 Identity = 68/106 (64.15%), Postives = 81/106 (76.42%), Query Frame = 1
Query: 1912 DTNPDASAPTFAQEYLASG-AQQPDWVVTSPPYKGAINFVKGAMEVARYGVALKLPLSFMEPCGDRGVWLQRNPPSICVFLRRVRYTPAHVMVGEFWGVWYKAGVG 2226
DTN DAS+ +F ++LA+ QQPDWVVT PPY GA+ FVK A+ VA+ GVALKLPLSF+EPC DR WLQ NPP++C+ + R RY PAHV VGEFWGVWY G G
Sbjct: 54 DTNLDASSASFTDDFLAAHHEQQPDWVVTRPPYNGALAFVKAALPVAKKGVALKLPLSFLEPCADRAGWLQANPPALCMMMSRARYQPAHVRVGEFWGVWYPPGSG 159
BLAST of mRNA_P-littoralis_Contig678.2.2 vs. uniprot
Match: A0A6H5K929_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K929_9PHAE) HSP 1 Score: 147 bits (372), Expect = 6.500e-38 Identity = 80/147 (54.42%), Postives = 93/147 (63.27%), Query Frame = 1
Query: 1822 MYGGREDAVAVILGTSCTVATNDVRTRRGVDTNPDASAPTFAQEYLASGAQQPDWVVTSPPYKGAINFVKGAMEVARYGVALKLPLSFMEPCGDRGVWLQRNPPSICVFLRRVRYTPAH-VMVGEFWGVWYK-AGVGERV-TRLVYC 2253
M GG EDAVA+ G +C V TNDV +R A +QPDWVVTSPPYKGA+ FVK + VA GVAL+LPLSF +PC DRG WL NPP +C FLRR +YT AH V VGEFWGVWY G G+ +RLV+C
Sbjct: 1 MCGGPEDAVALGFGGTCEVLTNDVSSRLSP----------------AHPGKQPDWVVTSPPYKGAVGFVKAVLAVAAKGVALRLPLSFRKPCADRGSWLVDNPPVMCGFLRRAKYTHAHHVKVGEFWGVWYTDGGCGKSGGSRLVFC 131 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig678.2.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig678.2.2 >prot_P-littoralis_Contig678.2.2 ID=prot_P-littoralis_Contig678.2.2|Name=mRNA_P-littoralis_Contig678.2.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=146bp MYGGREDAVAVILGTSCTVATNDVRTRRGVDTNPDASAPTFAQEYLASGAback to top mRNA from alignment at P-littoralis_Contig678:1492..4092+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig678.2.2 ID=mRNA_P-littoralis_Contig678.2.2|Name=mRNA_P-littoralis_Contig678.2.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=2601bp|location=Sequence derived from alignment at P-littoralis_Contig678:1492..4092+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig678:1492..4092+ >mRNA_P-littoralis_Contig678.2.2 ID=mRNA_P-littoralis_Contig678.2.2|Name=mRNA_P-littoralis_Contig678.2.2|organism=Pylaiella littoralis U1_48|type=CDS|length=438bp|location=Sequence derived from alignment at P-littoralis_Contig678:1492..4092+ (Pylaiella littoralis U1_48)back to top |