mRNA_P-littoralis_Contig678.11.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig678.11.1
Unique NamemRNA_P-littoralis_Contig678.11.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig678.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig678contigP-littoralis_Contig678:10888..11799 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size640
Hectar predicted targeting categoryother localisation
Exons3
Cds size552
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791408.1665983-CDS-P-littoralis_Contig678:10887..112651680791408.1665983-CDS-P-littoralis_Contig678:10887..11265Pylaiella littoralis U1_48CDSP-littoralis_Contig678 10888..11265 -
1680791408.1844587-CDS-P-littoralis_Contig678:11395..115691680791408.1844587-CDS-P-littoralis_Contig678:11395..11569Pylaiella littoralis U1_48CDSP-littoralis_Contig678 11396..11569 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791408.1978908-UTR-P-littoralis_Contig678:11569..116161680791408.1978908-UTR-P-littoralis_Contig678:11569..11616Pylaiella littoralis U1_48UTRP-littoralis_Contig678 11570..11616 -
1680791408.2110188-UTR-P-littoralis_Contig678:11758..117991680791408.2110188-UTR-P-littoralis_Contig678:11758..11799Pylaiella littoralis U1_48UTRP-littoralis_Contig678 11759..11799 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig678.11.1prot_P-littoralis_Contig678.11.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig678 10888..11569 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig678.11.1

>prot_P-littoralis_Contig678.11.1 ID=prot_P-littoralis_Contig678.11.1|Name=mRNA_P-littoralis_Contig678.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=184bp
MTLGGFRDVAAGDGDGMCDPGRAVEVSEVRGQSVGGDEVSGGTDTTVRTA
LGEGDAVEAERQSFRFDFSHDWWDDQYWSGRQLYSKGEPCLLENAHTNPY
GVLRDKEEEEEENEKNVASVAGVGGLDEVCLFPTIWRKWTTPRKEEGFFL
GETVWKKWSRAVNVGYVSSAGIKSRASRSGWRTG
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mRNA from alignment at P-littoralis_Contig678:10888..11799-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig678.11.1 ID=mRNA_P-littoralis_Contig678.11.1|Name=mRNA_P-littoralis_Contig678.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=912bp|location=Sequence derived from alignment at P-littoralis_Contig678:10888..11799- (Pylaiella littoralis U1_48)
CGACCGTCTACACGGGCGAGAAGGTCTTGGCTGATGACCCGGTAGGTGGC
AAGGTGGTGAGGGTCCGTACGTGTACGCCTGGTGTATACCATTTGTACCG
ACTGAAATACCAATTTGCCGAACTCAAAACCATTTCATTATAATTACATC
CTGTCTCGCACTAAAATCGTTACGACGACCCAGAATTTGCCGGTTCTGCG
GGTGGTGGAGATGGCACAAACGACGTTGACATGACTCTTGGTGGGTTTCG
CGATGTGGCTGCGGGCGACGGAGATGGCATGTGTGATCCCGGTAGAGCTG
TCGAAGTTTCAGAGGTTCGTGGTCAGTCTGTCGGCGGTGATGAAGTCAGC
GGGGGCACGGATACGACAGTTCGCACGGCGTTGGGCGAAGGAGACGCTGT
CGAGGTGTGTGGTTGGGTTGTCTGTTGTCTGCCACGCATGTATGTATATG
TAGCGTGACCACCTATCACAACCCACGTCCGCTGTACCAATTGGAAACCG
TGACATTTGTTCTCTACCGTTGTGATGAAAACAGGCAGAACGGCAGTCGT
TTCGTTTCGATTTTTCACACGACTGGTGGGACGACCAGTACTGGTCCGGC
CGTCAGCTCTACTCGAAGGGGGAGCCCTGTCTTTTGGAGAATGCTCACAC
CAACCCGTACGGCGTGCTTCGCGATAAGGAGGAGGAGGAGGAGGAGAACG
AGAAGAATGTTGCCTCTGTTGCCGGCGTTGGAGGGTTGGACGAAGTTTGC
CTCTTCCCAACAATCTGGAGGAAGTGGACAACGCCGAGGAAGGAGGAAGG
TTTTTTTCTCGGCGAAACAGTCTGGAAAAAATGGTCGAGAGCAGTAAATG
TGGGGTATGTCTCGAGTGCTGGGATAAAATCAAGGGCATCTCGCAGCGGG
TGGAGGACTGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig678:10888..11799-

>mRNA_P-littoralis_Contig678.11.1 ID=mRNA_P-littoralis_Contig678.11.1|Name=mRNA_P-littoralis_Contig678.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=552bp|location=Sequence derived from alignment at P-littoralis_Contig678:10888..11799- (Pylaiella littoralis U1_48)
ATGACTCTTGGTGGGTTTCGCGATGTGGCTGCGGGCGACGGAGATGGCAT
GTGTGATCCCGGTAGAGCTGTCGAAGTTTCAGAGGTTCGTGGTCAGTCTG
TCGGCGGTGATGAAGTCAGCGGGGGCACGGATACGACAGTTCGCACGGCG
TTGGGCGAAGGAGACGCTGTCGAGGCAGAACGGCAGTCGTTTCGTTTCGA
TTTTTCACACGACTGGTGGGACGACCAGTACTGGTCCGGCCGTCAGCTCT
ACTCGAAGGGGGAGCCCTGTCTTTTGGAGAATGCTCACACCAACCCGTAC
GGCGTGCTTCGCGATAAGGAGGAGGAGGAGGAGGAGAACGAGAAGAATGT
TGCCTCTGTTGCCGGCGTTGGAGGGTTGGACGAAGTTTGCCTCTTCCCAA
CAATCTGGAGGAAGTGGACAACGCCGAGGAAGGAGGAAGGTTTTTTTCTC
GGCGAAACAGTCTGGAAAAAATGGTCGAGAGCAGTAAATGTGGGGTATGT
CTCGAGTGCTGGGATAAAATCAAGGGCATCTCGCAGCGGGTGGAGGACTG
GC
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