mRNA_P-littoralis_Contig677.28.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig677.28.1
Unique NamemRNA_P-littoralis_Contig677.28.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig677.28.1 vs. uniprot
Match: A0A6H5KMN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMN1_9PHAE)

HSP 1 Score: 463 bits (1192), Expect = 4.000e-151
Identity = 244/321 (76.01%), Postives = 264/321 (82.24%), Query Frame = 2
Query:    5 EERTLMNFKAHKGWVSAVRFLGAVGPGGGGGAAAGLFGGCRLLSSANDSVVKLWDASKQHGGSPRLLCTVDDLHRTRKGIFSMDSHGTRVATGSKDTTVALGSLRPTGLERDRVLGDPNGCAGFHEKVVKGVSLRDENMVASCGDDSNVRVSDLRSRYNFGVSHSLEGAHDGAPSHTVRWHPLNENLLLTAGLDSTVRLHDLRRPGAAPLHVFRGHCPYSLARPRAIHRPEFLLTAGAVAGGGAGSSGGGRVNIITCGERSEKLSMYDAGTGATVSRGVLGDEASALAVGVSGWSNAPSPGAVSIAAALPGGSVVLLEPVW 967
            +ERTLMNFKAHKGWVSAVRFL       GGGA AG+ GGCRLL+SANDSVV LWD SKQH GSPRLL T+DDLH TRKGIF+MDSHGTRVATGSKDTTVA+ SL PTG+E DRVLGDP G   FHEKVVKGVSLRDEN VASCGDDSNVRVSDLRS  +FGVS  L+G H G   HTVRWHPL++NLLL+AGLDSTV L+DLRR  AAPLHVFRGHCPY+LARP+AIHRPEFL            S GG RVNIITCGERSE +SMYDAG+G TVSRG+LGDEASALAVG++ WS   SP A  IAAALPGGSVVLLEPVW
Sbjct:  449 DERTLMNFKAHKGWVSAVRFLE------GGGAGAGV-GGCRLLTSANDSVVNLWDTSKQHRGSPRLLSTMDDLHPTRKGIFAMDSHGTRVATGSKDTTVAIASLGPTGIEHDRVLGDPGGSEAFHEKVVKGVSLRDENTVASCGDDSNVRVSDLRSSSSFGVSQRLDGVHGGRACHTVRWHPLDDNLLLSAGLDSTVNLYDLRRL-AAPLHVFRGHCPYALARPKAIHRPEFLP-----------SGGGDRVNIITCGERSENISMYDAGSGGTVSRGLLGDEASALAVGIADWSKG-SPEAAGIAAALPGGSVVLLEPVW 749          
BLAST of mRNA_P-littoralis_Contig677.28.1 vs. uniprot
Match: D7G8U5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8U5_ECTSI)

HSP 1 Score: 460 bits (1183), Expect = 2.750e-148
Identity = 242/320 (75.62%), Postives = 263/320 (82.19%), Query Frame = 2
Query:    8 ERTLMNFKAHKGWVSAVRFLGAVGPGGGGGAAAGLFGGCRLLSSANDSVVKLWDASKQHGGSPRLLCTVDDLHRTRKGIFSMDSHGTRVATGSKDTTVALGSLRPTGLERDRVLGDPNGCAGFHEKVVKGVSLRDENMVASCGDDSNVRVSDLRSRYNFGVSHSLEGAHDGAPSHTVRWHPLNENLLLTAGLDSTVRLHDLRRPGAAPLHVFRGHCPYSLARPRAIHRPEFLLTAGAVAGGGAGSSGGGRVNIITCGERSEKLSMYDAGTGATVSRGVLGDEASALAVGVSGWSNAPSPGAVSIAAALPGGSVVLLEPVW 967
            ERTLMNFKAHKGWVSAVRFL       GGGA AG+ GGCRLL+SANDSVVKLWD SKQH G+PRLL T+DDLH TRKGIF+MDSHGTRVATGSKDTTVA+ SLRPTG+ERDRVLGDP G   FHEKVVKGVSLRDEN VASCGDDSNVRVSDLRS  + GVS  L+G H G   HTVRWHPL++N LL+AGLDSTV L+DLRR  AAPLHVFRGHCPY+LARP+AIHRPEFL            S GG  VNIITCGERSE +SMYDAG+G TVSRG+LGDEASALAVG++ WS   SP A  IAAALPGG+VVLLEPVW
Sbjct:  573 ERTLMNFKAHKGWVSAVRFLE------GGGAGAGV-GGCRLLTSANDSVVKLWDTSKQHRGTPRLLSTMDDLHPTRKGIFAMDSHGTRVATGSKDTTVAIASLRPTGIERDRVLGDPGGSEAFHEKVVKGVSLRDENTVASCGDDSNVRVSDLRSSSSVGVSQRLDGVHGGRACHTVRWHPLDDNRLLSAGLDSTVNLYDLRRL-AAPLHVFRGHCPYALARPKAIHRPEFLP-----------SGGGNSVNIITCGERSENISMYDAGSGGTVSRGLLGDEASALAVGIADWSKG-SPEAAGIAAALPGGNVVLLEPVW 872          
BLAST of mRNA_P-littoralis_Contig677.28.1 vs. uniprot
Match: A0A835ZGB7_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGB7_9STRA)

HSP 1 Score: 256 bits (654), Expect = 2.200e-73
Identity = 161/330 (48.79%), Postives = 201/330 (60.91%), Query Frame = 2
Query:    2 EEERTLMNFKAHKGWVSAVRFL----GAVGPGGGGGAAAGLFGG--CRLLSSANDSVVKLWDASKQHGGSPRLLCTVDDLHRTRKGIFSMDSHGTRVATGSKDTTVALGSL--RPTGLERDRVLGDPNGCAGFHEKVVKGVSLRDENMVASCGDDSNVRVSDLRSRYNFGVSHSLEGAHDGAPSHTVRWHPLNENLLLTAGLDSTVRLHDLRRPGAAPLHVFRGHCPYSLARPRAIHRPEFLLTAGAVAGGGAGSSGGGRVNIITCGERSEKLSMYDAGTGATVSRGVLGDEASALAVGVSGWSNAPSPGAVSIAAALPGGSVVLLEPVW 967
            +++ +LM F+AHKGWVSAV+F       V  GGG    AG  GG    LLSS ND VVKLWD S+Q  G+P L+    DLH   KGIFSM  H   +AT SKD TVA+  L     G+  DRVLGD       H  V+K V LRD   VASCGDD++VRV D+R+   + ++  LE  H  A +HTVRWHP +E+LLLTAGLD+ V+L DLR+P AA +  +RGH P++L R +AIHRPEF         GGA         +ITCGERS+ LSMYD  TG  +S+GV+G E S L+V            +  +AAA  GG VVLL+PVW
Sbjct:  294 QQDASLMTFRAHKGWVSAVQFAERGGATVEVGGGRDVEAGGRGGRALLLLSSGNDGVVKLWDVSRQSKGTPLLVAQACDLHS--KGIFSMHMHRGVIATASKDRTVAISKLVGDGRGIALDRVLGDTET---LHAGVIKDVQLRDATTVASCGDDASVRVCDIRAARGYYIAVGLEDVHS-ACAHTVRWHPTDEHLLLTAGLDTVVKLFDLRKPNAAAVE-YRGHVPFALPRYKAIHRPEFY-------DGGAA--------VITCGERSDALSMYDTKTGTAISKGVVGSEMSTLSV--------HQGNSTMVAAAQNGGEVVLLKPVW 593          
BLAST of mRNA_P-littoralis_Contig677.28.1 vs. uniprot
Match: A0A388LV75_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LV75_CHABU)

HSP 1 Score: 161 bits (407), Expect = 9.250e-38
Identity = 109/294 (37.07%), Postives = 157/294 (53.40%), Query Frame = 2
Query:    8 ERTLMNFKAHKGWVSAVRFLGAVGPGGGGGAAAGLFGGCRLLSSANDSVVKLWDASKQ---------HGGSPRLLCTVDDLHRTRKGIFSMDSHGTRVATGSKDTTVALGSLRPT-GLERDRVLGDPNGCAGFHEKVVKGVSLRDENMVASCGDDSNVRVSDLRSRYNFGVSHSLEGAHDGAPSHTVRWHPLNENLLLTAGLDSTVRLHDLRRPGAAPLHVFRGHCPYSLARPRAIHRPEFLLTAGAVAGGGAGSSGGGRVNIITCGERSEKLSMYDAGTGATVSRGVLGDEAS 859
            E  L+++K   GW S  +FL              +F    +L+S+ND  + LWD +KQ         HG SPR++   D++H   +GIF+MD    +VA+ SKD T+A+ S+    G  ++RVL      +G H   ++GVS RDE ++A CG D  V V DLR+     VS  +EGAH  A ++ V WHP  +N+L++A LD  + LHD+R   A PL    GH   S++R R I+RP F             S G G   +++ GE+S+ LS+Y   TG  +SRG LG  AS
Sbjct:  761 EGPLLSWKGSSGWASCTQFLSRQDQD------ESMF----VLTSSNDRTIVLWDINKQQVNHKGNSAHGSSPRVVVKTDEIHT--QGIFAMDEFDCKVASASKDRTLAISSVSSAKGFVKERVL------SGHHSGPIRGVSFRDEKILADCGGDGTVCVLDLRAPVPCAVS--IEGAHQSA-ANVVAWHPSMDNILMSASLDPHIYLHDIRST-AVPLFRLSGHINPSVSRCRQIYRPAFT------------SDGRG---VVSTGEKSQFLSLYSVDTGKAISRGHLGYSAS 1017          
BLAST of mRNA_P-littoralis_Contig677.28.1 vs. uniprot
Match: A0A7S4JBF1_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4JBF1_GUITH)

HSP 1 Score: 97.4 bits (241), Expect = 1.420e-18
Identity = 83/297 (27.95%), Postives = 137/297 (46.13%), Query Frame = 2
Query:    8 ERTLMNFKAHKGWVSAVRFLGAVGPGGGGGAAAGLFGGCRLLSSANDSVVKLWDASKQHGGSPRLLCT-VDDLHRTRKGIFSMDSHGTRVATGSKDTTVALGSLRPTGLERDRVLGDPNGCAGFHE-KVVKGVSLR-------DENMVASCGDDSNVRVSDLRSRYNFGVSHSLEGAHDGAPSHTVRWHPLNENLLLTAGLDSTVRLHDLRRPGAAPLHVFRGH--CPYSLARPRAIHRPEFLLTAGAVAGGGAGSSGGGRVNIITCGERSEKLSMYDAGTGATVSRGVLGDEASAL 865
            + +L++++AH GW+  ++FL                    LL+++ND  + +WD +       R+L   V  L     GIFS+   G  + +  KD  + +  +  + L   R L       G HE +V+K V  +       +  ++AS G+D  ++VSDLRSR     S  +E A     +  V+W P NE LLL++  D+ +++ D RR     LH   GH   P   AR + +HR  FL                    ++T GE+++ +S+YD  +GA VSRG+     +A+
Sbjct:   16 DSSLISWRAHSGWIGEIQFLSYQQEDQN-----------LLLTASNDKAITVWDLNLSASSGKRMLPKQVASLAAHDGGIFSLHEVGGTIGSAGKDGNIVISQIVDSQLSSQRTL------VGLHEGQVIKCVRFQALHGMQAEGTILASSGNDYAIQVSDLRSR---SPSLRVESAARSCVNF-VQWSPTNEFLLLSSSFDADLKIWDTRRVDVC-LHSLVGHHLVPRE-ARVKGMHRASFLHEG---------------KYVVTTGEKTDVISIYDVSSGAAVSRGLAESAGTAI 274          
BLAST of mRNA_P-littoralis_Contig677.28.1 vs. uniprot
Match: W4G2M4_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G2M4_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 7.310e-17
Identity = 77/241 (31.95%), Postives = 117/241 (48.55%), Query Frame = 2
Query:   17 LMNFKAHKGWVSAVRFLGAVGPGGGGGAAAGLFGGCRLLSSANDSVVKLWDASKQHGGSPRLLCTVDDLHRTRKGIFSMDSH--GTRVATGSKDTTVALGSLRPTGLERDRVLGDPNGCAGFHEKVVKGV--SLRDENMVASCGDDSNVRVSDLRSRYNFGVSHSLEGAHDGAPSHTVRWHPLNENLLLTAGLDSTVRLHDLRRPGAAPLHVFRGHCPYSLARPRAIHRPEFLLTAGAVAG 727
            L++F+AH+GW S V F     P              R++++AND  VKLW       G   L  T  +LH +  GIFS+D       +ATGSKD TVAL ++  + L+  R L         H  VVK V  S  +  M+ASCG+D  V+++DLR R +   +  ++G H  A + +VRW P   + +++ G D  + + D+R+    P         Y+ +  + +   EFL     VAG
Sbjct:  347 LLSFRAHQGWCSGVNFN-LTSPAQ-----------TRMITAANDGFVKLWAVDPSTLGLALLGST--NLH-SNSGIFSLDVQTCDAVIATGSKDYTVALSAVTQSHLQLVRTLD-------HHTGVVKCVRFSATEPTMLASCGNDLTVQITDLRCRSSVAATCLVQGGHTRAVN-SVRWAPTCRHTVVSTGFDGKILVWDIRQHDRGP------SVTYATSEFKTMFPVEFLAPNQVVAG 558          
BLAST of mRNA_P-littoralis_Contig677.28.1 vs. uniprot
Match: A0A7S2W6M7_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2W6M7_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.400e-16
Identity = 68/210 (32.38%), Postives = 105/210 (50.00%), Query Frame = 2
Query:  239 GIFSMDSHGTRVATGSKDTTVALGSLRPTGLERDRVLGDPNGCAGFHEKVVKGVSLRDENMVASCGDDSNVRVSDLRSRYNFGVSHSLEGAHDGAPSHTVRWHPLNENLLLTAGLDSTVRLHDLRRPGAAPLHVFRGHCPYSLA-RPRAIHRPEFLLTAGAVAGGGAGSSGGGRVNIITCGERSEKLSMYDAGTGATVSRGVLGDEASAL 865
            GIFSM + G+ +ATGSKD++VA+ ++ P G      L   +     H  +VK V  RD++ +AS G+D  V V D+R++        L   H  A + +VRWHP N N LLTA  +  +RL D+R+     +  F  H  +S A R ++I+ P+F+                   + +T G+ +  LS+YD   G+ + R       SAL
Sbjct:    1 GIFSMHTLGSCIATGSKDSSVAVSTICPDGS-----LSIIHKYEEDHASIVKSVRWRDQHTLASTGNDLTVNVFDMRTKK---TQAQLLDVHTMAVN-SVRWHPSNSNFLLTASFNPEIRLFDIRKTNTF-IREFNSH--HSAAKRCKSIYHPQFVDHG---------------FSFLTTGDDNNLLSLYDTNEGSILWRSCPNFHCSAL 183          
BLAST of mRNA_P-littoralis_Contig677.28.1 vs. uniprot
Match: A0A7S4L7F4_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4L7F4_9EUKA)

HSP 1 Score: 84.7 bits (208), Expect = 1.410e-15
Identity = 57/154 (37.01%), Postives = 82/154 (53.25%), Query Frame = 2
Query:    2 EEERT--LMNFKAHKGWVSAVRFLGAVGPGGGGGAAAGLFGGCRLLSSANDSVVKLWDASKQ----HGGSPRLLCTVDDLHRTRKGIFSMDSHGTRVATGSKDTTVALGSLRPTGLERDRVLGDPNGCAGFHEKVVKGVSLRDENMVASCGDDS 445
            EEE T  ++++KAHKGWVS VRF+          +++  +   +LL+S+ND  V LWD +KQ     G  P+ LC   +LH +  GIFSMD    ++ T SKD +V L SL   G+          GC      VVK  + RD+ +  S G+D+
Sbjct:   24 EEEETPPILSWKAHKGWVSTVRFI----------SSSSSY--SKLLTSSNDGCVTLWDVTKQTRNSRGVEPKKLCCNSNLHSS--GIFSMDVRNGKIITSSKDGSVVLSSLSDDGITSISSFTS-QGC------VVKSANFRDDFVFCSAGNDA 156          
BLAST of mRNA_P-littoralis_Contig677.28.1 vs. uniprot
Match: A0A6G0WYQ7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WYQ7_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 2.910e-14
Identity = 69/207 (33.33%), Postives = 106/207 (51.21%), Query Frame = 2
Query:   17 LMNFKAHKGWVSAVRF-LGAVGPGGGGGAAAGLFGGCRLLSSANDSVVKLWDASKQHGGSPRLLCTVDDLHRTRKGIFSMD-SHGTRVATGSKDTTVALGSLRPTGLERDRVLGDPNGCAGFHEKVVKGVSLRDEN---MVASCGDDSNVRVSDLRSRYNFGVSHSLEGAHDGAPSHTVRWHPLNENLLLTAGLDSTVRLHDLRRPG 622
            L +F+AH+GW S V   L +                  ++++AND++VKLWD    +     L+ T   +H    GIFS+D S G R+ATGSKD +VAL    P+ +   R+L   N     H+ VVK V     +   ++ASCG+D  + + D R       +  LEG H  A + ++RW P + + L++AG D  + + D R+PG
Sbjct:  282 LASFRAHQGWCSGVSLQLSSTKT--------------LVVTAANDALVKLWDVDAANSALI-LVTTASTVHS--HGIFSLDVSQGNRLATGSKDHSVALSEATPSSI---RLLHRYN----HHDGVVKCVRFASHDASTLLASCGNDGAIVLQDTREGT---AAVRLEG-HSRAVN-SIRWFPNSSHALISAGFDGHIHVWDTRKPG 459          
BLAST of mRNA_P-littoralis_Contig677.28.1 vs. uniprot
Match: A0A830HER1_9CHLO (Uncharacterized protein n=2 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HER1_9CHLO)

HSP 1 Score: 85.5 bits (210), Expect = 7.690e-14
Identity = 87/311 (27.97%), Postives = 125/311 (40.19%), Query Frame = 2
Query:    2 EEERTLMNFKAHKGWVSAVRFLGAVGPGGGGGAAAGLFGGCRLLSSANDSVVKLWD----------------ASKQHGGSPRLLCTVDDLHRTRKGIFSMDSHGTR---VATGSKDTTVALGSLRPTGLERDRVLGDPNGCAGFHEKVVKGVSLRDENMVASCGDDSNVRVSDLRSRYNFGVSHSLEGAHDGAPSHTVRWHPLNENLLLTAGLDSTVRLHDLRRPGAAPLHVFR--GHCPYSLA--RPRAIHRPEFLLTAGAVAGGGAGSSGGGRVNIITCGERSEKLSMYDAGTGATVSRGVLGDEASAL 865
            ++E+ L+ +KAH GWVS VR L                    LL+S+ND  V LW                  SK HGGS               GIFSMD +       AT +KD ++ + S   +      V    N     H  V K V  RD N++ S G+D +VR+ D+R            G  DG   +   +    E+    +G    V + D RR      HV    GHC  +    R ++++R  +   A                +++ CG  S  LS+YD  TGA +SRG LG +A+A+
Sbjct:  210 DKEQPLLYYKAHTGWVSEVRLLADS---------------KSLLTSSNDGAVSLWSLESVRADDSLTPERKMTSKVHGGS---------------GIFSMDIYEQNCAATATAAKDGSIMVSSFASSDYN---VTWQRNDA---HAGVAKSVRWRDANVMGSAGNDGSVRLWDVRMPETNDACADFAGMPDGGVVNFAEFG--GEHYCACSGFSREVAIWDTRR---LDQHVCTLVGHCGGTGVGQRIKSLYRAVYTPDA---------------KHVVVCGPGSASLSLYDGMTGACLSRGELGSDATAI 464          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig677.28.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5KMN1_9PHAE4.000e-15176.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8U5_ECTSI2.750e-14875.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZGB7_9STRA2.200e-7348.79WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A388LV75_CHABU9.250e-3837.07Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A7S4JBF1_GUITH1.420e-1827.95Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
W4G2M4_9STRA7.310e-1731.95Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A7S2W6M7_9STRA1.400e-1632.38Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A7S4L7F4_9EUKA1.410e-1537.01Hypothetical protein (Fragment) n=1 Tax=Paramoeba ... [more]
A0A6G0WYQ7_9STRA2.910e-1433.33Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A830HER1_9CHLO7.690e-1427.97Uncharacterized protein n=2 Tax=Pycnococcus provas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig677contigP-littoralis_Contig677:119943..125610 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G8U5
Preferred nameWDR59
PFAMsCAF1C_H4-bd,WD40,Zn_ribbon_17
Model size1900
Max annot lvl2759|Eukaryota
KEGG koko:K03678,ko:K10752,ko:K20409
KEGG Pathwayko03018,ko04150,ko04218,map03018,map04150,map04218
KEGG ModuleM00391
Hectar predicted targeting categoryother localisation
GOsGO:0000323,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005773,GO:0005774,GO:0006950,GO:0007154,GO:0008150,GO:0009267,GO:0009605,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0010646,GO:0010647,GO:0016020,GO:0023051,GO:0023056,GO:0031090,GO:0031667,GO:0031668,GO:0031669,GO:0032006,GO:0032008,GO:0032991,GO:0033554,GO:0034198,GO:0035859,GO:0042594,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0061700,GO:0065007,GO:0071496,GO:0098588,GO:0098805,GO:0098852,GO:1902531,GO:1902533,GO:1990928
Exons5
Evalue7.92e-151
EggNOG OGsKOG0264@1|root,KOG0264@2759|Eukaryota
Descriptionchromatin organization
Cds size954
COG categoryK
BRITEko00000,ko00001,ko00002,ko03019,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig677.28.1prot_P-littoralis_Contig677.28.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig677 120870..125591 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791407.679431-UTR-P-littoralis_Contig677:119942..1208691680791407.679431-UTR-P-littoralis_Contig677:119942..120869Pylaiella littoralis U1_48UTRP-littoralis_Contig677 119943..120869 -
1680791407.7696834-UTR-P-littoralis_Contig677:125591..1256101680791407.7696834-UTR-P-littoralis_Contig677:125591..125610Pylaiella littoralis U1_48UTRP-littoralis_Contig677 125592..125610 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791407.7022185-CDS-P-littoralis_Contig677:120869..1209891680791407.7022185-CDS-P-littoralis_Contig677:120869..120989Pylaiella littoralis U1_48CDSP-littoralis_Contig677 120870..120989 -
1680791407.7175527-CDS-P-littoralis_Contig677:122174..1226061680791407.7175527-CDS-P-littoralis_Contig677:122174..122606Pylaiella littoralis U1_48CDSP-littoralis_Contig677 122175..122606 -
1680791407.729053-CDS-P-littoralis_Contig677:123119..1231981680791407.729053-CDS-P-littoralis_Contig677:123119..123198Pylaiella littoralis U1_48CDSP-littoralis_Contig677 123120..123198 -
1680791407.7429829-CDS-P-littoralis_Contig677:123824..1239681680791407.7429829-CDS-P-littoralis_Contig677:123824..123968Pylaiella littoralis U1_48CDSP-littoralis_Contig677 123825..123968 -
1680791407.7572372-CDS-P-littoralis_Contig677:125412..1255911680791407.7572372-CDS-P-littoralis_Contig677:125412..125591Pylaiella littoralis U1_48CDSP-littoralis_Contig677 125413..125591 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig677.28.1

>prot_P-littoralis_Contig677.28.1 ID=prot_P-littoralis_Contig677.28.1|Name=mRNA_P-littoralis_Contig677.28.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=318bp
MNFKAHKGWVSAVRFLGAVGPGGGGGAAAGLFGGCRLLSSANDSVVKLWD
ASKQHGGSPRLLCTVDDLHRTRKGIFSMDSHGTRVATGSKDTTVALGSLR
PTGLERDRVLGDPNGCAGFHEKVVKGVSLRDENMVASCGDDSNVRVSDLR
SRYNFGVSHSLEGAHDGAPSHTVRWHPLNENLLLTAGLDSTVRLHDLRRP
GAAPLHVFRGHCPYSLARPRAIHRPEFLLTAGAVAGGGAGSSGGGRVNII
TCGERSEKLSMYDAGTGATVSRGVLGDEASALAVGVSGWSNAPSPGAVSI
AAALPGGSVVLLEPVWE*
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mRNA from alignment at P-littoralis_Contig677:119943..125610-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig677.28.1 ID=mRNA_P-littoralis_Contig677.28.1|Name=mRNA_P-littoralis_Contig677.28.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5668bp|location=Sequence derived from alignment at P-littoralis_Contig677:119943..125610- (Pylaiella littoralis U1_48)
GGAGGAGGAGCGCACGCTGATGAATTTCAAGGCGCACAAGGGTTGGGTGT CCGCTGTGCGATTTCTGGGTGCTGTTGGGCCTGGTGGGGGCGGGGGGGCG GCGGCTGGATTATTCGGGGGTTGCCGCTTGCTGTCTTCGGCGAACGACTC CGTTGTGAAGCTGTGGGATGCCTCCAAGCAGCACGGCGGCTCACCCAGGT ACTTTGAGATGGCAAGGTGGGGGCTCGGCATTGGGGTTGGGGGTGTAGGG GGGGTCGGAGTTGGGCGTGGTGTGGTGTGTGCGTACTGGTTGAACTTTCG TGCCTGGCCGTAGTGTTTCGCGTTGCCGTGTAGATAGACGCTGGCATCCA CCCGCACCTCCGTACCGGTAATGACACCGCCGTTGTTGGCAATATGTCAT CAGACCCAGCCACAAGCTGGCCCCAGCCATTTTTTTTGGACGAAAGTTAC CCAGGCAACAGGCAGGAAGAGGCACCTTCTTGGACTGCTGGGGGAAGGGT GCTACGATGCCTGCGACCGCACCAAATCAATGTCAAAAATCGTACCAGTA CCTGATTTATCGTTGTGTTCCTTCCGGTGAGTTGTTGTCGCGCCCCCCTC CAGGCCCAGTTTTTGCAGCTGACTCCATCACTCCACAGCACTAGCTTGAT TCTCCACAGCACAAAAGGGGTGTGCGAGAGTCGAAAAAAGGGGATGTATG ATACATACTCCTGTGTGTGTCTTGCCTTCACTCACTAAAAATCGTTGCGA TCCTCTCTCCTCAGTTTTTTTTTTTTTATTCCTTCTAGTATCCGTATCGC TGACTGACATTACCGTAGGTTGCACGAGATGTCACACTTTCATACGTTAG ATACCACATCCCCTCCGAAAAGTTACACAACACCACGCCCTTGTGCTAGT TTTTGGAATCCTGAAAAAAAAATGCGCCAGTCTGTCTCAAGTCAGTAAAA AAGGTGACAAAACATATCGCACCCCCACTCAAAATTATTATTCCAAACCA AACCAGTCAAAATTAAACAAACCCACACCGGTGTGATATTGTTTTTAGAC ACAAACATGTTATCACACCGGTGTGCGTTCTTATGCAACCAACGGTAGAC TCATCCTATACCGGACGGTTTCCGTGGTCACACACAGGCATCACCCGTAC CCAAAGAACGGGTTATAGTTGCGATACGGAAATCCTAGCCACCAATCCGA GTGGCGAGAAAGGGCTGTCCGAAATCGTGAACCGTCGTTCTTTTGGTGTT TGTATCGTACAGCACCCCGTCTGTCACGGATCATCAGTCGAGCTCTTGAA ACATCGACCCGGAAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTT TCCGAAAATTTGTGAAGGCATGCTTTGATGTTGGCCAGCACCCCCTTCGA TGTGAGCAGTACCGTGATCGATCATGTACAGCCGAAAATCGGTCCCGGAG GCCCCGCGTGGTATCTCCCGGGGGGGCCGTGCGGCATCTCCAGGGTCCCC CGTGTGGCATCTCATACATCCTGTACGAAAAGCTAGTATATACATACCGG CACATTTTGTAGAGAAGTGTGTTCATGCCTTGTTCAGTACTTCACTCCCA TATGTTCTTGCGCTCGCGCGTCGCGGCTGTCCCCGTGTCCAGGCTGCTGT GTACCGTCGACGACCTCCACCGCACCCGCAAGGGCATCTTCTCCATGGAC TCCCACGGGACGCGCGTGGCCACGGGCTCGAAGGACACGACGGTCGCCCT CGGCTCTCTTCGTCCGACAGGGCTGGAGCGCGACAGGTGTGCTGCCGAAC GATCACGATCACGATCACGACCACGGTCATGTTCTCTCCAGGCTTCAATT GTCGAACCTCAACAACGATTTACTCCTCCCAGTCCTTCCCTTTTTCGATG GTGTTAGCGATCGATTGCTCAAAATCCCGGCCCTTTCTCGGACCTGTTTT GAAATGAGAAGACTTTCTGTTTTGAAATGAGAAGACTTTCAATTCTCGAT TTTTTTGTGCGTCTGTGTGTGTGTGTGGTTGTATGTTTTTTTTCCCGCTC ACGAAGTGTATCTCGTCCGCCTATCTCATGTTTCGTACTTCAGTATATCA AATTTTTAGGCGGTGTCTTCGTCTAGTACTGCCGTGGGTCAATCGATCTC GAATTTCGAAAAGTAGGAGCTTTCAATCATTCTTGTGTTGTGAGTGTGAT TGTGTGTGTTTGTGTGTACATTTATTTTATCCCAAATGATTCAAAATAAC ACAGAAGCTCCACAAAACTATCATGATGATTGGTTTCAAGCACGTGCAGT AGTAAATGTTTTTGTTTGCGTTTTAGTATTTATGGGTGAGAGCCAACAGG CAGGACACGGGGGAATGCCCCAAGCTTTCGTTCTGACTTTCCGGCTGAAA TTTCGGCAACAGGGTGCTGGGAGACCCGAACGGTTGCGCAGGCTTTCACG AGAAGGTTGTCAAGGGGGTCAGCCTGAGGGATGAGAATATGGTGAGACCG CAGTCTGAGTGTCCGTGTGTTGTTGTGTTTGTTGTTGTTGATTCTCACAT GAGCTCACTACCGCCGCAGTCTAGCCCGTGGTCACAAACCAGGCACGTAT CGTGCTAGGAAAAAAAGAAAATAAATTAACTATGATCACCCGCAGTCAAA TCAGATAGGGTACCGTTTGGGTACCATCTGTTGTGGCCAAAGTACAAAAC AAAATGCAAAAAAAAATACGGAAATAACAGGTTCGTAAGAAAAAACAAAA ATTTGCGTGTCTGTGTGTGTAGGAAGGGGGCGGGGGGGGTCGTCACTCCG TCCTTGCACCCGCGAACGACTTCCCTAATGTCCTTCCCCGTGCCCCTTTT CCTCCAGGCGCCACGCGTGACGTATTTGACATTGATAAAGCTCGTGGCGG ATAGTTTATTGAGCACAACCCCCTTCCCCCCCTGCCGACCGCCTGCTCTG AACACTTCAAAATATATAAATGTAACACGTTTACGTATCATCATACATAC GTAGGTTGCCTCGTGCGGAGACGACTCGAATGTGCGAGTGTCTGACCTCC GTTCCCGGTATAACTTCGGGGTCTCCCATAGCTTGGAAGGGGCGCACGAT GGGGCCCCCTCCCACACCGTGCGCTGGCACCCCCTCAACGAGAACCTGCT GCTCACGGCCGGGCTGGACTCCACCGTGAGGCTCCACGACCTGAGACGAC CAGGCGCCGCCCCCTTGCATGTGTTTCGGGGGCACTGCCCCTACTCGCTC GCAAGACCAAGGGCCATTCACCGGCCGGAGTTCTTGTTGACCGCGGGGGC GGTGGCTGGGGGCGGGGCCGGCAGCAGTGGCGGCGGCCGTGTCAACATCA TCACTTGCGGCGAGCGCTCCGAAAAGCTGTCCATGTACGACGCCGGGACC GGGGCAACGGTCAGCCGAGGAGTGCTCGGGGACGAGGTGGGTTGGGTTGG GTTGGATTGGGGTGGGGTGGGGCGGGGCGGGGTGGGGTGGGGTGGCGTGG GGCGTAGCTCCGGGGGCGTTCGTGGGCGTGTGTATTTTAGTGTCGTACAC AATGTATACACGGAGAGTTTTTTTTTCTTTACTTTTCAACGAGACAAGGT GATAAGTCATGCACATATGCGTGAAGTTAGCACAACCGTACATACAAACT TTTTTAGCAACACAAACATACACCTCTATCCTACAAAATGAAAAGTCCTG GAATAGTCACCGTTCGGATAAAAAAAATCAGCGGTGAATAAATACTGCCC GAAAAATATTTTGGTTCGCGCCCGGGACAGCTCTGGACGATGTTCGATGA ATGGCACACAGATGAAAAAATAAAACAGTTTTCTCTTCAGCGAACTTAGT ACGCGCAACAGGTGGACTCTTTCTATCATACTATCGGGGTTGATGCGGCC ACGTTTTGTACTGCACATGATGGATGGGTTTTCTATTCGGAAACAGAGGT AGACAGACTACTCTACGCGTTGTGTTTTGTACAGGCAAATAATGATGGAC AAGGAGGTCACAGAGGTGCAATGATTCTGTTTAACACGGTATGCGATGGT TGAAGATCCCGCGAAGAAGAGGGCACCGTACTCCAAATGCCGCATTTGCC GAACGACCTTAGATGGTGGATCGCCTAGTTTTTGGAAAATTCTCTCCCTA CGAGACTTTTCCCGCGCCTCACCGCTTTTTTCGTCACGATGGCGCCCGCC GACTCTTCTTCCTTCTGTGGAGGTACAGCAGTATAGAGTCTTCAAAACTC GGCCCGGCGCGAGTGCGTGTATGTGTGCGCGTGTGTGTAGATGGTCGTGC GTGTGTGTACGAGTACGAGTGTGCGTGTGCACCTAGTACTGTCTGATTAG GAAATTCGTAACACGGCTTGGATTGCCTGGTTTTGCTCTGTCTATTGCCC TTTCTGTCGCACCCCCCTCTTTCTCTCCCTCTCTATCCCTCTCTCTTTCT CAATCTTCATCTCCATCTCTCTCTTTATCTCTCTATTTATCTCTCCTCTC CATCCCTCTCTCTCTTTCTCTCCCTCCCTCTATTTCTACTGTATCTCAAT CTCAACCTCTTCGTATCTCTCTCTATCTCTCTGTCCCTCTTCGCCCATCT CTCTCGGTGTCCACGTCTCAGGCTTCTGCTCTGGCGGTCGGCGTCAGCGG GTGGTCAAACGCACCTTCGCCAGGCGCGGTGAGTATAGCGGCGGCTCTGC CCGGCGGCAGCGTGGTCTTGCTCGAGCCCGTGTGGGAGTGACTGCTAACT GACGTCGGAATCTGCGTCAAGCAAAAGCGATAGTACAGTAGTACAATGCT GTGTTTTTGCTCTCCCAGCACCTGCCGGGGGTTACGTTTAAATAATTACT GTACTCGTAGCGTTGACCGGGATTGGGTGGGGTGGGGGAAAGCTGAGGCA TTATTGGAAATATGCAATACGTATCAGACTTGACTGATTTGTGGGCGAAC TCTGCATTATCGTGAGTACGAGTGATCATGTCGACGCCAATGCCGAGGGG AGTGAAGCGCAGACTCCAATGGATGACGGGTACTTGTAGCACTTTGACGT AAAAGTTTGCGTGCGGTTTGAAGAGTTGTGTATAAGGAAGGAGAAAAATA TTTTTGTGAAGCGAACTGTAGTATTGGAATATTATCGGTGAAGTGGTAGG AGGAATGGCTCCATGCGTACTGTAGTATTCAGCAGGGCGGGATATCAAAC GGTGGTGTCAAATGCAGCAGGTGTGCAGTACATGCATTCATTATGGATTA ATCTAGCACTTTGAGGTAGATCAGTCACTCAAAAGAAACTGCCCGTATTT CGTACCAGTAACCTCGTGCAAGCAGCAAGGCACCCATCCGCCGTATTTCT TTTGAGTATTGCGTGACTTTGCAAAAATTCGTTTCCGACATGTCAGTGGA AGCACAAATCATGCATTATCAAGGGTACCCATCAGATTGTCGTCGTCACT GACACGATCCGGCAAGATGTCAAACGGATCATCAACGACACGAATACATT ACAAATAACGGTATTCCACATACATGTTTATATATGTGATGTGCGCACAA CAGGCAGACATGGAATGCCAGCAACGTGAGTCTGATGACGTGGCCAGTAA CGCCATGGCATCAGTTGGGTTCGGTGAGATCGAGGCGAGGTCACAACCTC GCGCACGTCCTCTTTACC
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Coding sequence (CDS) from alignment at P-littoralis_Contig677:119943..125610-

>mRNA_P-littoralis_Contig677.28.1 ID=mRNA_P-littoralis_Contig677.28.1|Name=mRNA_P-littoralis_Contig677.28.1|organism=Pylaiella littoralis U1_48|type=CDS|length=954bp|location=Sequence derived from alignment at P-littoralis_Contig677:119943..125610- (Pylaiella littoralis U1_48)
ATGAATTTCAAGGCGCACAAGGGTTGGGTGTCCGCTGTGCGATTTCTGGG
TGCTGTTGGGCCTGGTGGGGGCGGGGGGGCGGCGGCTGGATTATTCGGGG
GTTGCCGCTTGCTGTCTTCGGCGAACGACTCCGTTGTGAAGCTGTGGGAT
GCCTCCAAGCAGCACGGCGGCTCACCCAGGCTGCTGTGTACCGTCGACGA
CCTCCACCGCACCCGCAAGGGCATCTTCTCCATGGACTCCCACGGGACGC
GCGTGGCCACGGGCTCGAAGGACACGACGGTCGCCCTCGGCTCTCTTCGT
CCGACAGGGCTGGAGCGCGACAGGGTGCTGGGAGACCCGAACGGTTGCGC
AGGCTTTCACGAGAAGGTTGTCAAGGGGGTCAGCCTGAGGGATGAGAATA
TGGTTGCCTCGTGCGGAGACGACTCGAATGTGCGAGTGTCTGACCTCCGT
TCCCGGTATAACTTCGGGGTCTCCCATAGCTTGGAAGGGGCGCACGATGG
GGCCCCCTCCCACACCGTGCGCTGGCACCCCCTCAACGAGAACCTGCTGC
TCACGGCCGGGCTGGACTCCACCGTGAGGCTCCACGACCTGAGACGACCA
GGCGCCGCCCCCTTGCATGTGTTTCGGGGGCACTGCCCCTACTCGCTCGC
AAGACCAAGGGCCATTCACCGGCCGGAGTTCTTGTTGACCGCGGGGGCGG
TGGCTGGGGGCGGGGCCGGCAGCAGTGGCGGCGGCCGTGTCAACATCATC
ACTTGCGGCGAGCGCTCCGAAAAGCTGTCCATGTACGACGCCGGGACCGG
GGCAACGGTCAGCCGAGGAGTGCTCGGGGACGAGGCTTCTGCTCTGGCGG
TCGGCGTCAGCGGGTGGTCAAACGCACCTTCGCCAGGCGCGGTGAGTATA
GCGGCGGCTCTGCCCGGCGGCAGCGTGGTCTTGCTCGAGCCCGTGTGGGA
GTGA
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