mRNA_P-littoralis_Contig677.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig677.3.1
Unique NamemRNA_P-littoralis_Contig677.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig677.3.1 vs. uniprot
Match: A0A6H5KQS4_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQS4_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 2.880e-14
Identity = 69/176 (39.20%), Postives = 93/176 (52.84%), Query Frame = 2 
Query:   62 IDRAVKIAGQDRLVRQQWRKEGRAGFRLRSVLLAKNTKKPLGGALTAVVADWDALVTRGKEHVEAIRERAEKTQSKSAAVAEAGEAPLPRKRATADTEVAATDPLEAEQHSGRRSSQQQRSSPQQPKPKAARRQTAKEKRHAHVMETAREDPELKEKLREMLGKDDLGAAAAKVAA 589
            +DR + + G+ R+VRQ  +K  R G  L S LL K T K  G  L++VVAD D L  +G+EH EAI+ERA K  ++ AA           KR  AD  VA +DPL      G RS            P+A+R + A E+R +  +E  ++D  L E++R MLG      AAAK AA
Sbjct:    3 VDRIIHVRGEKRVVRQHRKKHNR-GILLTSWLLKKGTTKAAGSKLSSVVADEDQLREKGREHAEAIQERASKRGNQQAAXXXXXXXSGKGKRKGAD--VALSDPLALAHDGGTRSGAT---------PEASREEQASEERRSSALELIQKDHVLMERVRAMLGASAADQAAAKEAA 166
[Close]
BLAST of mRNA_P-littoralis_Contig677.3.1 vs. uniprot
Match: A0A6H5KK37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK37_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 3.380e-12
Identity = 67/170 (39.41%), Postives = 89/170 (52.35%), Query Frame = 2 
Query:   80 IAGQDRLVRQQWRKEGRAGFRLRSVLLAKNTKKPLGGALTAVVADWDALVTRGKEHVEAIRERAEKTQSKSAAVAEAGEAPLPRKRATADTEVAATDPLEAEQHSGRRSSQQQRSSPQQPKPKAARRQTAKEKRHAHVMETAREDPELKEKLREMLGKDDLGAAAAKVAA 589
            + G+ R+VRQ  +K  R G  L S LL K T K  G  L++VVAD D L  +G+EH EAI+ERA K  ++ AA           KR  AD  VA +DPL      G RS            P+A+R + A E+R +  +E  ++D  L E++R MLG      AAAK AA
Sbjct:    3 VRGEKRVVRQHRKKHNR-GILLTSWLLKKGTTKAAGSKLSSVVADEDQLREKGREHAEAIQERASKRGNQQAAXXXXXXXSGKGKRKGAD--VALSDPLALAHDGGTRSGAT---------PEASREEQASEERRSSALELIQKDHVLMERVRAMLGASAADQAAAKEAA 160
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig677.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KQS4_9PHAE2.880e-1439.20Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KK37_9PHAE3.380e-1239.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig677contigP-littoralis_Contig677:18767..19587 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size594
Hectar predicted targeting categoryother localisation
Exons2
Cds size561
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791406.451819-CDS-P-littoralis_Contig677:18766..188921680791406.451819-CDS-P-littoralis_Contig677:18766..18892Pylaiella littoralis U1_48CDSP-littoralis_Contig677 18767..18892 -
1680791406.4655905-CDS-P-littoralis_Contig677:19121..195561680791406.4655905-CDS-P-littoralis_Contig677:19121..19556Pylaiella littoralis U1_48CDSP-littoralis_Contig677 19122..19556 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791406.477589-UTR-P-littoralis_Contig677:19556..195871680791406.477589-UTR-P-littoralis_Contig677:19556..19587Pylaiella littoralis U1_48UTRP-littoralis_Contig677 19557..19587 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig677.3.1prot_P-littoralis_Contig677.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig677 18767..19556 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig677.3.1

>prot_P-littoralis_Contig677.3.1 ID=prot_P-littoralis_Contig677.3.1|Name=mRNA_P-littoralis_Contig677.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=187bp
MSSAASAKNKIDRAVKIAGQDRLVRQQWRKEGRAGFRLRSVLLAKNTKKP
LGGALTAVVADWDALVTRGKEHVEAIRERAEKTQSKSAAVAEAGEAPLPR
KRATADTEVAATDPLEAEQHSGRRSSQQQRSSPQQPKPKAARRQTAKEKR
HAHVMETAREDPELKEKLREMLGKDDLGAAAAKVAAA
back to top

mRNA from alignment at P-littoralis_Contig677:18767..19587-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig677.3.1 ID=mRNA_P-littoralis_Contig677.3.1|Name=mRNA_P-littoralis_Contig677.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=821bp|location=Sequence derived from alignment at P-littoralis_Contig677:18767..19587- (Pylaiella littoralis U1_48)
CCCCTCAGACAGCAGGCTCGTGGATAGAAATATGTCGTCGGCAGCTTCCG
CAAAAAACAAAATTGATCGTGCTGTCAAGATTGCCGGACAAGACCGACTG
GTCAGGCAGCAATGGAGGAAGGAGGGCCGTGCAGGCTTCCGCCTGAGGTC
CGTGCTTCTGGCCAAGAACACCAAGAAACCCCTTGGCGGTGCCTTGACGG
CGGTGGTGGCAGACTGGGATGCACTGGTGACGCGTGGGAAGGAGCACGTG
GAAGCGATCCGGGAACGAGCTGAGAAAACCCAGAGCAAATCAGCAGCAGT
AGCAGAAGCAGGCGAAGCGCCGCTTCCGCGAAAGCGCGCCACCGCCGACA
CAGAAGTCGCTGCAACGGACCCTTTGGAGGCGGAGCAGCACAGCGGGAGA
AGGAGTTCTCAACAGCAGCGAAGTTCTCCACAGCAGCCAAAGCCTAAGGC
CGCACGGCGACAAACGGTGAGTCCATGCTCTTGTGTGATGGTTGAGGCAC
ATCGGCAACTTTCCCGCAATAATTGACCTATTCTCCCCTGCTGTACTAAA
TTTGGTATACTCTCCTCCTCTCTGCAGCTGCTGCTTGCTGTTACAGAGTA
TTTTTTTCCCGAAAACGAGAACGTATACTAATTTCAATACAACCTCCTCG
CCCCCTCTTCCCCTTCGGGCACACCCACTGCTGTACTACGTTTAGGCGAA
AGAAAAACGTCATGCTCACGTCATGGAGACTGCGAGGGAGGATCCTGAGT
TGAAGGAGAAGCTAAGGGAAATGCTGGGGAAGGATGACCTGGGAGCGGCA
GCCGCGAAAGTAGCAGCAGCG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig677:18767..19587-

>mRNA_P-littoralis_Contig677.3.1 ID=mRNA_P-littoralis_Contig677.3.1|Name=mRNA_P-littoralis_Contig677.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=561bp|location=Sequence derived from alignment at P-littoralis_Contig677:18767..19587- (Pylaiella littoralis U1_48)
ATGTCGTCGGCAGCTTCCGCAAAAAACAAAATTGATCGTGCTGTCAAGAT
TGCCGGACAAGACCGACTGGTCAGGCAGCAATGGAGGAAGGAGGGCCGTG
CAGGCTTCCGCCTGAGGTCCGTGCTTCTGGCCAAGAACACCAAGAAACCC
CTTGGCGGTGCCTTGACGGCGGTGGTGGCAGACTGGGATGCACTGGTGAC
GCGTGGGAAGGAGCACGTGGAAGCGATCCGGGAACGAGCTGAGAAAACCC
AGAGCAAATCAGCAGCAGTAGCAGAAGCAGGCGAAGCGCCGCTTCCGCGA
AAGCGCGCCACCGCCGACACAGAAGTCGCTGCAACGGACCCTTTGGAGGC
GGAGCAGCACAGCGGGAGAAGGAGTTCTCAACAGCAGCGAAGTTCTCCAC
AGCAGCCAAAGCCTAAGGCCGCACGGCGACAAACGGCGAAAGAAAAACGT
CATGCTCACGTCATGGAGACTGCGAGGGAGGATCCTGAGTTGAAGGAGAA
GCTAAGGGAAATGCTGGGGAAGGATGACCTGGGAGCGGCAGCCGCGAAAG
TAGCAGCAGCG
back to top