mRNA_P-littoralis_Contig677.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig677.2.1
Unique NamemRNA_P-littoralis_Contig677.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig677.2.1 vs. uniprot
Match: A0A6H5KT99_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT99_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 5.430e-42
Identity = 85/149 (57.05%), Postives = 100/149 (67.11%), Query Frame = 2
Query:   80 HTKIGRMVYNSALATVAGVGGHTCDPAHPCSAADRCPPAESRGSTSSVATRAELLGLRPTTYREAQDRMKNANFSVSPQQALE-GRYLWADRKTKSDVTDSRVMDLARRCWHSDDVSRASGNSGQKAMWRPSKKAGEVYHPRRQLMVPG 523
            H+ IGR  YN+ +A  AG   HTCDP  P             G+ S  A RA+ LG+R  T+R A+ RM   + ++ PQ+ALE GRYLWA RK +SD  D RVM LARR WHSDD+SRASG+SG KAMWRPSKKAGE YHPRRQLMV G
Sbjct:  200 HSNIGRTAYNTVIAAAAGAQ-HTCDPDDPXXXXXXXXXXXXHGAVSLTA-RAQSLGVRDATFRAARTRMHRTDHTIPPQEALEKGRYLWAPRKERSDKMDERVMGLARRFWHSDDISRASGDSGTKAMWRPSKKAGEEYHPRRQLMVAG 346          
BLAST of mRNA_P-littoralis_Contig677.2.1 vs. uniprot
Match: A0A6H5JWW3_9PHAE (MULE domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW3_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 6.140e-42
Identity = 85/149 (57.05%), Postives = 100/149 (67.11%), Query Frame = 2
Query:   80 HTKIGRMVYNSALATVAGVGGHTCDPAHPCSAADRCPPAESRGSTSSVATRAELLGLRPTTYREAQDRMKNANFSVSPQQALE-GRYLWADRKTKSDVTDSRVMDLARRCWHSDDVSRASGNSGQKAMWRPSKKAGEVYHPRRQLMVPG 523
            H+ IGR  YN+ +A  AG   HTCDP  P             G+ S  A RA+ LG+R  T+R A+ RM   + ++ PQ+ALE GRYLWA RK +SD  D RVM LARR WHSDD+SRASG+SG KAMWRPSKKAGE YHPRRQLMV G
Sbjct:  824 HSNIGRTAYNTVIAAAAGAQ-HTCDPDDPXXXXXXXXXXXXHGAVSLTA-RAQSLGVRDATFRAARTRMHRTDHTIPPQEALEKGRYLWAPRKERSDKMDERVMGLARRFWHSDDISRASGDSGTKAMWRPSKKAGEEYHPRRQLMVAG 970          
BLAST of mRNA_P-littoralis_Contig677.2.1 vs. uniprot
Match: A0A6H5JQ41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ41_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 4.310e-40
Identity = 79/149 (53.02%), Postives = 96/149 (64.43%), Query Frame = 2
Query:   80 HTKIGRMVYNSALATVAGVGGHTCDPAHPCSAADRCPPAESRGSTSSVATRAELLGLRPTTYREAQDRMKNANFSVSPQQALEG-RYLWADRKTKSDVTDSRVMDLARRCWHSDDVSRASGNSGQKAMWRPSKKAGEVYHPRRQLMVPG 523
            H+ IGR   N+ +A  AG   HTCDP  P             G+ S +A RA+ LG+R  T+R ++ RM   + ++ PQ+ALE  RYLWA RK +SD  D RVM LARR WHSD+  RA G+SG KAMWRPSKKAGE YHPRRQLMV G
Sbjct:   40 HSNIGRAACNTVIAAAAGAE-HTCDPDDPXXXXXXXXXXXXHGAVS-LAARAQGLGVRDPTFRASRTRMHRTDQTIPPQEALEKERYLWAPRKERSDKMDERVMGLARRFWHSDENFRAPGDSGTKAMWRPSKKAGEEYHPRRQLMVAG 186          
BLAST of mRNA_P-littoralis_Contig677.2.1 vs. uniprot
Match: A0A6H5JNM5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNM5_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 4.760e-35
Identity = 70/137 (51.09%), Postives = 87/137 (63.50%), Query Frame = 2
Query:   38 RKVQTSVPENMG*QHTKIGRMVYNSALATVAGVGGHTCDPAHPCSAADRCPPAESRGSTSSVATRAELLGLRPTTYREAQDRMKNANFSVSPQQALE-GRYLWADRKTKSDVTDSRVMDLARRCWHSDDVSRASGNS 445
            R +  S+    G   + IGR+ Y   LA VAG G HTC P  PC+ A+R PPAE +   S  A RAE LG+R  T+R A  RM + N ++ P QALE GRY W  RKT+SD  D R+++LA R WHSDDVSRASG+S
Sbjct:   33 RAMAASLGTLQGNSKSNIGRVAYTIVLAAVAGAGEHTCSPTDPCNPAERYPPAEPQSGVS-FAQRAESLGVREKTFRAAHVRMHHTNHTIPPPQALEEGRYCWTRRKTRSDAADERMLELAIRFWHSDDVSRASGDS 168          
BLAST of mRNA_P-littoralis_Contig677.2.1 vs. uniprot
Match: A0A6H5JF90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF90_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 2.690e-32
Identity = 75/149 (50.34%), Postives = 94/149 (63.09%), Query Frame = 2
Query:   80 HTKIGRMVYNSALATVAGVGGHTCDPAHPCSAADRCPPAESRGSTSSVATRAELLGLRPTTYREAQDRMKNANFSVSPQ-QALEGRYLWADRKTKSDVTDSRVMDLARRCWHSDDVSRASGNSGQKAMWRPSKKAGEVYHPRRQLMVPG 523
            ++ IG   Y +ALA  AG G HTC     C    RC P ES G   S+A RA  LG+R  T+ +A+ RM N N  ++P+  A EG Y++ +RKT+SDVT+  VM LAR  WHSDDVSRA+GNSG K M++ SKK     HPRRQLM  G
Sbjct:  189 NSSIGWTTYQTALAVAAGAGEHTCTDTDVCHPGQRCKPVESGGV--SLAERANSLGIRHETFSDARWRMHNTNHDIAPKIAASEGCYVYNERKTRSDVTNPEVMALARAFWHSDDVSRATGNSG-KDMYKESKKRDAPSHPRRQLMHKG 334          
BLAST of mRNA_P-littoralis_Contig677.2.1 vs. uniprot
Match: A0A6H5K7E6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7E6_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 7.060e-32
Identity = 75/149 (50.34%), Postives = 94/149 (63.09%), Query Frame = 2
Query:   80 HTKIGRMVYNSALATVAGVGGHTCDPAHPCSAADRCPPAESRGSTSSVATRAELLGLRPTTYREAQDRMKNANFSVSPQ-QALEGRYLWADRKTKSDVTDSRVMDLARRCWHSDDVSRASGNSGQKAMWRPSKKAGEVYHPRRQLMVPG 523
            ++ IG   Y +ALA  AG G HTC     C    RC P ES G   S+A RA  LG+R  T+ +A+ RM N N  ++P+  A EG Y++ +RKT+SDVT+  VM LAR  WHSDDVSRA+GNSG K M++ SKK     HPRRQLM  G
Sbjct:  189 NSSIGWTTYQTALAVAAGAGEHTCTDTDVCHPGQRCKPVESGGV--SLAERANSLGIRHETFSDARWRMHNTNHDIAPKIAASEGCYVYNERKTRSDVTNPEVMALARAFWHSDDVSRATGNSG-KDMYKESKKRDAPSHPRRQLMHKG 334          
BLAST of mRNA_P-littoralis_Contig677.2.1 vs. uniprot
Match: A0A6H5JG47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG47_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 9.970e-32
Identity = 58/81 (71.60%), Postives = 65/81 (80.25%), Query Frame = 2
Query:  284 MKNANFSVSPQQALE-GRYLWADRKTKSDVTDSRVMDLARRCWHSDDVSRASGNSGQKAMWRPSKKAGEVYHPRRQLMVPG 523
            M   + ++ PQ+ALE GRYLWA RK +SD  D RVM LARR WHSDD+SRASG+SG KAMWRPSKKAGE YHPRRQLMV G
Sbjct:    1 MHRTDHTIPPQEALEKGRYLWAPRKERSDKMDERVMGLARRFWHSDDISRASGDSGTKAMWRPSKKAGEEYHPRRQLMVAG 81          
BLAST of mRNA_P-littoralis_Contig677.2.1 vs. uniprot
Match: A0A6H5JE40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE40_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 2.370e-31
Identity = 58/81 (71.60%), Postives = 65/81 (80.25%), Query Frame = 2
Query:  284 MKNANFSVSPQQALE-GRYLWADRKTKSDVTDSRVMDLARRCWHSDDVSRASGNSGQKAMWRPSKKAGEVYHPRRQLMVPG 523
            M   + ++ PQ+ALE GRYLWA RK +SD  D RVM LARR WHSDD+SRASG+SG KAMWRPSKKAGE YHPRRQLMV G
Sbjct:    1 MHRTDHTIPPQEALEKGRYLWAPRKERSDKMDERVMGLARRFWHSDDISRASGDSGTKAMWRPSKKAGEEYHPRRQLMVAG 81          
BLAST of mRNA_P-littoralis_Contig677.2.1 vs. uniprot
Match: A0A6H5J5R2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5R2_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 5.910e-30
Identity = 68/149 (45.64%), Postives = 84/149 (56.38%), Query Frame = 2
Query:   38 RKVQTSVPENMG*QHTKIGRMVYNSALATVAGVGGHTCDPAHPCSAADRCPPAESRGSTSSVATRAELLGLRPTTYREAQDRMKNANFSVSPQQALE-GRYLWADRKTKSDVTDSRVMDLARRCWHSDDVSRASGNSGQKAMWRPSKKA 481
            R +  S+    G   + IGR+ Y + LA VAG G HTC P  P          E +G  S  A RAE LG+R  T+R A  RM + + ++ P QALE GRY W  RKT+SD TD RV++LA R WH DDVSRASG+S       P  KA
Sbjct:   33 RAMAASLAALKGKSQSNIGRVAYTTVLAAVAGAGEHTCSPTDPXXXXXXXXXXEPQGGVS-FAQRAESLGVREKTFRAAYVRMHHTDHTIPPPQALEEGRYCWTTRKTRSDATDERVLELAIRFWHCDDVSRASGDSPVHGGGEPGPKA 180          
BLAST of mRNA_P-littoralis_Contig677.2.1 vs. uniprot
Match: A0A6H5KLZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLZ5_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 3.550e-29
Identity = 68/149 (45.64%), Postives = 84/149 (56.38%), Query Frame = 2
Query:   38 RKVQTSVPENMG*QHTKIGRMVYNSALATVAGVGGHTCDPAHPCSAADRCPPAESRGSTSSVATRAELLGLRPTTYREAQDRMKNANFSVSPQQALE-GRYLWADRKTKSDVTDSRVMDLARRCWHSDDVSRASGNSGQKAMWRPSKKA 481
            R +  S+    G   + IGR+ Y + LA VAG G HTC P  P          E +G  S  A RAE LG+R  T+R A  RM + + ++ P QALE GRY W  RKT+SD TD RV++LA R WH DDVSRASG+S       P  KA
Sbjct:  119 RTMAASLAALKGKSQSNIGRVAYTTVLAAVAGAGEHTCSPTDPXXXXXXXXXXEPQGGVS-FAQRAESLGVREKTFRAAHVRMHHTDHTIPPPQALEEGRYCWTTRKTRSDATDERVLELAIRFWHCDDVSRASGDSPVHGGGEPGPKA 266          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig677.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KT99_9PHAE5.430e-4257.05Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWW3_9PHAE6.140e-4257.05MULE domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A6H5JQ41_9PHAE4.310e-4053.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNM5_9PHAE4.760e-3551.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JF90_9PHAE2.690e-3250.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7E6_9PHAE7.060e-3250.34Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JG47_9PHAE9.970e-3271.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JE40_9PHAE2.370e-3171.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J5R2_9PHAE5.910e-3045.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLZ5_9PHAE3.550e-2945.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig677contigP-littoralis_Contig677:17776..18588 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size524
Hectar predicted targeting categoryother localisation
Exons2
Cds size426
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791406.3971446-CDS-P-littoralis_Contig677:17775..178521680791406.3971446-CDS-P-littoralis_Contig677:17775..17852Pylaiella littoralis U1_48CDSP-littoralis_Contig677 17776..17852 -
1680791406.4083533-CDS-P-littoralis_Contig677:18142..184911680791406.4083533-CDS-P-littoralis_Contig677:18142..18491Pylaiella littoralis U1_48CDSP-littoralis_Contig677 18143..18491 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791406.419568-UTR-P-littoralis_Contig677:18491..185881680791406.419568-UTR-P-littoralis_Contig677:18491..18588Pylaiella littoralis U1_48UTRP-littoralis_Contig677 18492..18588 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig677.2.1prot_P-littoralis_Contig677.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig677 17776..18491 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig677.2.1

>prot_P-littoralis_Contig677.2.1 ID=prot_P-littoralis_Contig677.2.1|Name=mRNA_P-littoralis_Contig677.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=142bp
MVYNSALATVAGVGGHTCDPAHPCSAADRCPPAESRGSTSSVATRAELLG
LRPTTYREAQDRMKNANFSVSPQQALEGRYLWADRKTKSDVTDSRVMDLA
RRCWHSDDVSRASGNSGQKAMWRPSKKAGEVYHPRRQLMVPG
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mRNA from alignment at P-littoralis_Contig677:17776..18588-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig677.2.1 ID=mRNA_P-littoralis_Contig677.2.1|Name=mRNA_P-littoralis_Contig677.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=813bp|location=Sequence derived from alignment at P-littoralis_Contig677:17776..18588- (Pylaiella littoralis U1_48)
TGTGACCCCGTCGATGGGCCTAGCCTGTAGTTTGAACCGCAAGGTGCAGA CTAGTGTGCCAGAGAATATGGGATGACAACACACCAAGATCGGCCGCATG GTGTACAACAGTGCGCTGGCTACAGTCGCTGGTGTGGGGGGACACACATG TGATCCTGCTCACCCGTGCAGCGCCGCTGACCGCTGCCCTCCCGCTGAGT CACGGGGTTCTACCTCCTCTGTCGCCACACGAGCAGAGCTGCTTGGGCTG AGGCCCACGACCTACCGTGAAGCCCAAGATCGGATGAAGAACGCCAACTT TTCCGTCTCACCGCAGCAAGCTTTGGAGGGGCGCTACTTGTGGGCTGACC GTAAGACCAAGAGCGACGTGACAGACTCACGTGTGATGGACCTGGCGAGG CGGTGCTGGCATTCGGACGACGTCTCCCGTGCGTCGGGAAATTCGGGTGA GCTGATGTTGTTTTTGGTGTTGGTGATGATAGCACTACTGCTGTCGTACT TTGTTGCTGCCATCGCTGCTTCTGTAGTTGCTGTGATGTGCTCTGTTGCT GCGTTCGCTGCTGTAGTTGCTGTTGAGTTCTCTGTTGCGGCCTTCGCTAG TGCCATTGATACTAGTGTTCATGTCGCCGTGCTCTGCTGCTGCTGTTGAT GCTGCTGTAGCGTTCATAATTTTGCCGCACTGCTGCTGTAGCCCCGGGTA ATTTACCGCACACTTTTTCTGCCTTGGGCACCGCAGGGCAAAAGGCCATG TGGAGACCATCCAAGAAAGCTGGCGAGGTGTATCATCCACGCAGACAGCT CATGGTTCCGGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig677:17776..18588-

>mRNA_P-littoralis_Contig677.2.1 ID=mRNA_P-littoralis_Contig677.2.1|Name=mRNA_P-littoralis_Contig677.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=426bp|location=Sequence derived from alignment at P-littoralis_Contig677:17776..18588- (Pylaiella littoralis U1_48)
ATGGTGTACAACAGTGCGCTGGCTACAGTCGCTGGTGTGGGGGGACACAC
ATGTGATCCTGCTCACCCGTGCAGCGCCGCTGACCGCTGCCCTCCCGCTG
AGTCACGGGGTTCTACCTCCTCTGTCGCCACACGAGCAGAGCTGCTTGGG
CTGAGGCCCACGACCTACCGTGAAGCCCAAGATCGGATGAAGAACGCCAA
CTTTTCCGTCTCACCGCAGCAAGCTTTGGAGGGGCGCTACTTGTGGGCTG
ACCGTAAGACCAAGAGCGACGTGACAGACTCACGTGTGATGGACCTGGCG
AGGCGGTGCTGGCATTCGGACGACGTCTCCCGTGCGTCGGGAAATTCGGG
GCAAAAGGCCATGTGGAGACCATCCAAGAAAGCTGGCGAGGTGTATCATC
CACGCAGACAGCTCATGGTTCCGGGG
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