mRNA_P-littoralis_Contig677.2.1 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig677.2.1 vs. uniprot
Match: A0A6H5KT99_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT99_9PHAE) HSP 1 Score: 159 bits (402), Expect = 5.430e-42 Identity = 85/149 (57.05%), Postives = 100/149 (67.11%), Query Frame = 2
Query: 80 HTKIGRMVYNSALATVAGVGGHTCDPAHPCSAADRCPPAESRGSTSSVATRAELLGLRPTTYREAQDRMKNANFSVSPQQALE-GRYLWADRKTKSDVTDSRVMDLARRCWHSDDVSRASGNSGQKAMWRPSKKAGEVYHPRRQLMVPG 523
H+ IGR YN+ +A AG HTCDP P G+ S A RA+ LG+R T+R A+ RM + ++ PQ+ALE GRYLWA RK +SD D RVM LARR WHSDD+SRASG+SG KAMWRPSKKAGE YHPRRQLMV G
Sbjct: 200 HSNIGRTAYNTVIAAAAGAQ-HTCDPDDPXXXXXXXXXXXXHGAVSLTA-RAQSLGVRDATFRAARTRMHRTDHTIPPQEALEKGRYLWAPRKERSDKMDERVMGLARRFWHSDDISRASGDSGTKAMWRPSKKAGEEYHPRRQLMVAG 346
BLAST of mRNA_P-littoralis_Contig677.2.1 vs. uniprot
Match: A0A6H5JWW3_9PHAE (MULE domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW3_9PHAE) HSP 1 Score: 159 bits (402), Expect = 6.140e-42 Identity = 85/149 (57.05%), Postives = 100/149 (67.11%), Query Frame = 2
Query: 80 HTKIGRMVYNSALATVAGVGGHTCDPAHPCSAADRCPPAESRGSTSSVATRAELLGLRPTTYREAQDRMKNANFSVSPQQALE-GRYLWADRKTKSDVTDSRVMDLARRCWHSDDVSRASGNSGQKAMWRPSKKAGEVYHPRRQLMVPG 523
H+ IGR YN+ +A AG HTCDP P G+ S A RA+ LG+R T+R A+ RM + ++ PQ+ALE GRYLWA RK +SD D RVM LARR WHSDD+SRASG+SG KAMWRPSKKAGE YHPRRQLMV G
Sbjct: 824 HSNIGRTAYNTVIAAAAGAQ-HTCDPDDPXXXXXXXXXXXXHGAVSLTA-RAQSLGVRDATFRAARTRMHRTDHTIPPQEALEKGRYLWAPRKERSDKMDERVMGLARRFWHSDDISRASGDSGTKAMWRPSKKAGEEYHPRRQLMVAG 970
BLAST of mRNA_P-littoralis_Contig677.2.1 vs. uniprot
Match: A0A6H5JQ41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ41_9PHAE) HSP 1 Score: 143 bits (360), Expect = 4.310e-40 Identity = 79/149 (53.02%), Postives = 96/149 (64.43%), Query Frame = 2
Query: 80 HTKIGRMVYNSALATVAGVGGHTCDPAHPCSAADRCPPAESRGSTSSVATRAELLGLRPTTYREAQDRMKNANFSVSPQQALEG-RYLWADRKTKSDVTDSRVMDLARRCWHSDDVSRASGNSGQKAMWRPSKKAGEVYHPRRQLMVPG 523
H+ IGR N+ +A AG HTCDP P G+ S +A RA+ LG+R T+R ++ RM + ++ PQ+ALE RYLWA RK +SD D RVM LARR WHSD+ RA G+SG KAMWRPSKKAGE YHPRRQLMV G
Sbjct: 40 HSNIGRAACNTVIAAAAGAE-HTCDPDDPXXXXXXXXXXXXHGAVS-LAARAQGLGVRDPTFRASRTRMHRTDQTIPPQEALEKERYLWAPRKERSDKMDERVMGLARRFWHSDENFRAPGDSGTKAMWRPSKKAGEEYHPRRQLMVAG 186
BLAST of mRNA_P-littoralis_Contig677.2.1 vs. uniprot
Match: A0A6H5JNM5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNM5_9PHAE) HSP 1 Score: 130 bits (326), Expect = 4.760e-35 Identity = 70/137 (51.09%), Postives = 87/137 (63.50%), Query Frame = 2
Query: 38 RKVQTSVPENMG*QHTKIGRMVYNSALATVAGVGGHTCDPAHPCSAADRCPPAESRGSTSSVATRAELLGLRPTTYREAQDRMKNANFSVSPQQALE-GRYLWADRKTKSDVTDSRVMDLARRCWHSDDVSRASGNS 445
R + S+ G + IGR+ Y LA VAG G HTC P PC+ A+R PPAE + S A RAE LG+R T+R A RM + N ++ P QALE GRY W RKT+SD D R+++LA R WHSDDVSRASG+S
Sbjct: 33 RAMAASLGTLQGNSKSNIGRVAYTIVLAAVAGAGEHTCSPTDPCNPAERYPPAEPQSGVS-FAQRAESLGVREKTFRAAHVRMHHTNHTIPPPQALEEGRYCWTRRKTRSDAADERMLELAIRFWHSDDVSRASGDS 168
BLAST of mRNA_P-littoralis_Contig677.2.1 vs. uniprot
Match: A0A6H5JF90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF90_9PHAE) HSP 1 Score: 130 bits (327), Expect = 2.690e-32 Identity = 75/149 (50.34%), Postives = 94/149 (63.09%), Query Frame = 2
Query: 80 HTKIGRMVYNSALATVAGVGGHTCDPAHPCSAADRCPPAESRGSTSSVATRAELLGLRPTTYREAQDRMKNANFSVSPQ-QALEGRYLWADRKTKSDVTDSRVMDLARRCWHSDDVSRASGNSGQKAMWRPSKKAGEVYHPRRQLMVPG 523
++ IG Y +ALA AG G HTC C RC P ES G S+A RA LG+R T+ +A+ RM N N ++P+ A EG Y++ +RKT+SDVT+ VM LAR WHSDDVSRA+GNSG K M++ SKK HPRRQLM G
Sbjct: 189 NSSIGWTTYQTALAVAAGAGEHTCTDTDVCHPGQRCKPVESGGV--SLAERANSLGIRHETFSDARWRMHNTNHDIAPKIAASEGCYVYNERKTRSDVTNPEVMALARAFWHSDDVSRATGNSG-KDMYKESKKRDAPSHPRRQLMHKG 334
BLAST of mRNA_P-littoralis_Contig677.2.1 vs. uniprot
Match: A0A6H5K7E6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7E6_9PHAE) HSP 1 Score: 130 bits (327), Expect = 7.060e-32 Identity = 75/149 (50.34%), Postives = 94/149 (63.09%), Query Frame = 2
Query: 80 HTKIGRMVYNSALATVAGVGGHTCDPAHPCSAADRCPPAESRGSTSSVATRAELLGLRPTTYREAQDRMKNANFSVSPQ-QALEGRYLWADRKTKSDVTDSRVMDLARRCWHSDDVSRASGNSGQKAMWRPSKKAGEVYHPRRQLMVPG 523
++ IG Y +ALA AG G HTC C RC P ES G S+A RA LG+R T+ +A+ RM N N ++P+ A EG Y++ +RKT+SDVT+ VM LAR WHSDDVSRA+GNSG K M++ SKK HPRRQLM G
Sbjct: 189 NSSIGWTTYQTALAVAAGAGEHTCTDTDVCHPGQRCKPVESGGV--SLAERANSLGIRHETFSDARWRMHNTNHDIAPKIAASEGCYVYNERKTRSDVTNPEVMALARAFWHSDDVSRATGNSG-KDMYKESKKRDAPSHPRRQLMHKG 334
BLAST of mRNA_P-littoralis_Contig677.2.1 vs. uniprot
Match: A0A6H5JG47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG47_9PHAE) HSP 1 Score: 120 bits (302), Expect = 9.970e-32 Identity = 58/81 (71.60%), Postives = 65/81 (80.25%), Query Frame = 2
Query: 284 MKNANFSVSPQQALE-GRYLWADRKTKSDVTDSRVMDLARRCWHSDDVSRASGNSGQKAMWRPSKKAGEVYHPRRQLMVPG 523
M + ++ PQ+ALE GRYLWA RK +SD D RVM LARR WHSDD+SRASG+SG KAMWRPSKKAGE YHPRRQLMV G
Sbjct: 1 MHRTDHTIPPQEALEKGRYLWAPRKERSDKMDERVMGLARRFWHSDDISRASGDSGTKAMWRPSKKAGEEYHPRRQLMVAG 81
BLAST of mRNA_P-littoralis_Contig677.2.1 vs. uniprot
Match: A0A6H5JE40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE40_9PHAE) HSP 1 Score: 120 bits (302), Expect = 2.370e-31 Identity = 58/81 (71.60%), Postives = 65/81 (80.25%), Query Frame = 2
Query: 284 MKNANFSVSPQQALE-GRYLWADRKTKSDVTDSRVMDLARRCWHSDDVSRASGNSGQKAMWRPSKKAGEVYHPRRQLMVPG 523
M + ++ PQ+ALE GRYLWA RK +SD D RVM LARR WHSDD+SRASG+SG KAMWRPSKKAGE YHPRRQLMV G
Sbjct: 1 MHRTDHTIPPQEALEKGRYLWAPRKERSDKMDERVMGLARRFWHSDDISRASGDSGTKAMWRPSKKAGEEYHPRRQLMVAG 81
BLAST of mRNA_P-littoralis_Contig677.2.1 vs. uniprot
Match: A0A6H5J5R2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5R2_9PHAE) HSP 1 Score: 117 bits (292), Expect = 5.910e-30 Identity = 68/149 (45.64%), Postives = 84/149 (56.38%), Query Frame = 2
Query: 38 RKVQTSVPENMG*QHTKIGRMVYNSALATVAGVGGHTCDPAHPCSAADRCPPAESRGSTSSVATRAELLGLRPTTYREAQDRMKNANFSVSPQQALE-GRYLWADRKTKSDVTDSRVMDLARRCWHSDDVSRASGNSGQKAMWRPSKKA 481
R + S+ G + IGR+ Y + LA VAG G HTC P P E +G S A RAE LG+R T+R A RM + + ++ P QALE GRY W RKT+SD TD RV++LA R WH DDVSRASG+S P KA
Sbjct: 33 RAMAASLAALKGKSQSNIGRVAYTTVLAAVAGAGEHTCSPTDPXXXXXXXXXXEPQGGVS-FAQRAESLGVREKTFRAAYVRMHHTDHTIPPPQALEEGRYCWTTRKTRSDATDERVLELAIRFWHCDDVSRASGDSPVHGGGEPGPKA 180
BLAST of mRNA_P-littoralis_Contig677.2.1 vs. uniprot
Match: A0A6H5KLZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLZ5_9PHAE) HSP 1 Score: 117 bits (293), Expect = 3.550e-29 Identity = 68/149 (45.64%), Postives = 84/149 (56.38%), Query Frame = 2
Query: 38 RKVQTSVPENMG*QHTKIGRMVYNSALATVAGVGGHTCDPAHPCSAADRCPPAESRGSTSSVATRAELLGLRPTTYREAQDRMKNANFSVSPQQALE-GRYLWADRKTKSDVTDSRVMDLARRCWHSDDVSRASGNSGQKAMWRPSKKA 481
R + S+ G + IGR+ Y + LA VAG G HTC P P E +G S A RAE LG+R T+R A RM + + ++ P QALE GRY W RKT+SD TD RV++LA R WH DDVSRASG+S P KA
Sbjct: 119 RTMAASLAALKGKSQSNIGRVAYTTVLAAVAGAGEHTCSPTDPXXXXXXXXXXEPQGGVS-FAQRAESLGVREKTFRAAHVRMHHTDHTIPPPQALEEGRYCWTTRKTRSDATDERVLELAIRFWHCDDVSRASGDSPVHGGGEPGPKA 266 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig677.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig677.2.1 >prot_P-littoralis_Contig677.2.1 ID=prot_P-littoralis_Contig677.2.1|Name=mRNA_P-littoralis_Contig677.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=142bp MVYNSALATVAGVGGHTCDPAHPCSAADRCPPAESRGSTSSVATRAELLGback to top mRNA from alignment at P-littoralis_Contig677:17776..18588- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig677.2.1 ID=mRNA_P-littoralis_Contig677.2.1|Name=mRNA_P-littoralis_Contig677.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=813bp|location=Sequence derived from alignment at P-littoralis_Contig677:17776..18588- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig677:17776..18588- >mRNA_P-littoralis_Contig677.2.1 ID=mRNA_P-littoralis_Contig677.2.1|Name=mRNA_P-littoralis_Contig677.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=426bp|location=Sequence derived from alignment at P-littoralis_Contig677:17776..18588- (Pylaiella littoralis U1_48)back to top |