mRNA_P-littoralis_Contig677.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-littoralis_Contig677.1.1
Unique Name	mRNA_P-littoralis_Contig677.1.1
Type	mRNA
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))

Homology

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BLAST of mRNA_P-littoralis_Contig677.1.1 vs. uniprot
Match: A0A6H5KY26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY26_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 2.840e-32
Identity = 58/76 (76.32%), Postives = 64/76 (84.21%), Query Frame = 1

Query:  205 ALGRAAHRMVGWIRFQDQKMEDGKTHKKQQLPQVGPLRDLWDEFMEHSKKYIEHHELAKWQRKAHNMCLGTFRKGE 432
            ALG  A R+VGW+RF+DQ MEDGK HKKQQ+PQ G L DLW EF+EHSKKYI HHELAKWQR+AHNMCL TF KGE
Sbjct:  212 ALGSMADRVVGWLRFEDQVMEDGKVHKKQQIPQAGKLGDLWKEFVEHSKKYIHHHELAKWQRQAHNMCLATFSKGE 287

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BLAST of mRNA_P-littoralis_Contig677.1.1 vs. uniprot
Match: A0A6H5K491_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K491_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 6.420e-32
Identity = 58/76 (76.32%), Postives = 64/76 (84.21%), Query Frame = 1

Query:  205 ALGRAAHRMVGWIRFQDQKMEDGKTHKKQQLPQVGPLRDLWDEFMEHSKKYIEHHELAKWQRKAHNMCLGTFRKGE 432
            ALG  A R+VGW+RF+DQ MEDGK HKKQQ+PQ G L DLW EF+EHSKKYI HHELAKWQR+AHNMCL TF KGE
Sbjct:  234 ALGSMADRVVGWLRFEDQVMEDGKVHKKQQIPQAGKLDDLWKEFVEHSKKYIHHHELAKWQRQAHNMCLATFGKGE 309

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BLAST of mRNA_P-littoralis_Contig677.1.1 vs. uniprot
Match: A0A6H5KI39_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI39_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 1.930e-31
Identity = 55/72 (76.39%), Postives = 61/72 (84.72%), Query Frame = 1

Query:  205 ALGRAAHRMVGWIRFQDQKMEDGKTHKKQQLPQVGPLRDLWDEFMEHSKKYIEHHELAKWQRKAHNMCLGTF 420
            ALG  A R+VGW+RF+DQ MEDGK HKKQQLPQ G L DLWDE +EHSKKY+ HHELAKWQR+AHNMCL TF
Sbjct:  234 ALGSMADRVVGWLRFEDQVMEDGKVHKKQQLPQAGKLGDLWDEVVEHSKKYMHHHELAKWQRQAHNMCLATF 305

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BLAST of mRNA_P-littoralis_Contig677.1.1 vs. uniprot
Match: A0A6H5KT99_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT99_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 3.650e-31
Identity = 58/76 (76.32%), Postives = 63/76 (82.89%), Query Frame = 1

Query:  205 ALGRAAHRMVGWIRFQDQKMEDGKTHKKQQLPQVGPLRDLWDEFMEHSKKYIEHHELAKWQRKAHNMCLGTFRKGE 432
            ALG  A R+VGW+RF DQ MEDGK HKKQQLPQ G L DLW EF+EHSKKY+ HHELAKWQR+AHNMCL TF KGE
Sbjct:  500 ALGSMADRVVGWLRFADQVMEDGKVHKKQQLPQGGKLGDLWQEFVEHSKKYLHHHELAKWQRQAHNMCLATFSKGE 575

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BLAST of mRNA_P-littoralis_Contig677.1.1 vs. uniprot
Match: A0A6H5JWW3_9PHAE (MULE domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW3_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 3.890e-31
Identity = 58/76 (76.32%), Postives = 63/76 (82.89%), Query Frame = 1

Query:  205 ALGRAAHRMVGWIRFQDQKMEDGKTHKKQQLPQVGPLRDLWDEFMEHSKKYIEHHELAKWQRKAHNMCLGTFRKGE 432
            ALG  A R+VGW+RF DQ MEDGK HKKQQLPQ G L DLW EF+EHSKKY+ HHELAKWQR+AHNMCL TF KGE
Sbjct: 1124 ALGSMADRVVGWLRFADQVMEDGKVHKKQQLPQGGKLGDLWQEFVEHSKKYLHHHELAKWQRQAHNMCLATFSKGE 1199

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BLAST of mRNA_P-littoralis_Contig677.1.1 vs. uniprot
Match: A0A6H5L4W3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4W3_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 2.520e-30
Identity = 52/70 (74.29%), Postives = 59/70 (84.29%), Query Frame = 1

Query:  205 ALGRAAHRMVGWIRFQDQKMEDGKTHKKQQLPQVGPLRDLWDEFMEHSKKYIEHHELAKWQRKAHNMCLG 414
            AL   A R+VGW+RF++Q MEDGK HKKQQ+PQ G L DLW EF+EHSKKYI HHELAKWQR+AHNMCLG
Sbjct:   87 ALESMADRVVGWLRFENQVMEDGKVHKKQQVPQAGKLDDLWKEFVEHSKKYIHHHELAKWQRQAHNMCLG 156

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BLAST of mRNA_P-littoralis_Contig677.1.1 vs. uniprot
Match: A0A6H5JKB9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKB9_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 1.340e-24
Identity = 46/57 (80.70%), Postives = 49/57 (85.96%), Query Frame = 1

Query:  262 MEDGKTHKKQQLPQVGPLRDLWDEFMEHSKKYIEHHELAKWQRKAHNMCLGTFRKGE 432
            MEDGK HKKQQ+PQ G L DLW EF+EHSKKYI HHELAKWQR+AHNMCL TF KGE
Sbjct:    1 MEDGKVHKKQQIPQAGTLDDLWKEFVEHSKKYIHHHELAKWQRQAHNMCLATFGKGE 57

[Close]

BLAST of mRNA_P-littoralis_Contig677.1.1 vs. uniprot
Match: A0A6H5KXG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXG9_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 1.590e-24
Identity = 46/80 (57.50%), Postives = 57/80 (71.25%), Query Frame = 2

Query:    2 GGEGCKKWLGMCRSLHNFSDEFMCEKVDMLGEDKEDKFEHWGRRPECVAGKCSNCGFGNPNGIPTDC--LLSVARHIEWW 235
            GG GC KW+ MC+ LH+FS+   CEKVD L ED+  +FEHWGR+P CVA +CS CGFGNP GIP +C  L S+A  +  W
Sbjct:   90 GGSGCGKWMAMCKDLHSFSEALACEKVDFLEEDRGGRFEHWGRKPACVAMECSECGFGNPGGIPMNCDALGSMADRVVGW 169

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BLAST of mRNA_P-littoralis_Contig677.1.1 vs. uniprot
Match: A0A6H5K6N6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6N6_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 5.810e-24
Identity = 46/57 (80.70%), Postives = 49/57 (85.96%), Query Frame = 1

Query:  262 MEDGKTHKKQQLPQVGPLRDLWDEFMEHSKKYIEHHELAKWQRKAHNMCLGTFRKGE 432
            MEDGK HKKQQ+PQ G L DLW EF+EHSKKYI HHELAKWQR+AHNMCL TF KGE
Sbjct:    1 MEDGKVHKKQQIPQAGTLDDLWKEFVEHSKKYIHHHELAKWQRQAHNMCLATFGKGE 57

[Close]

BLAST of mRNA_P-littoralis_Contig677.1.1 vs. uniprot
Match: A0A6H5JF90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF90_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 2.310e-18
Identity = 39/73 (53.42%), Postives = 50/73 (68.49%), Query Frame = 2

Query:   11 GCKKWLGMCRSLHNFSDEFMCEKVDMLGEDKEDKFEHWGRRPECVAGKCSNCGFGNPNGIPTDCLLSVARHIE 229
            GCK+W  MC+ L  FSD   CEKV++L  D +  FE WGR+P C A KCS CGFG P GIPT+C  ++A++ E
Sbjct:  422 GCKRWSVMCQDLSKFSDALACEKVNLLEGDSDGGFEFWGRKPACAAMKCSECGFGKPGGIPTNCT-AIAKNRE 493

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig677.1.1 vs. uniprot

BLAST of mRNA_P-littoralis_Contig677.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KY26_9PHAE	2.840e-32	76.32	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K491_9PHAE	6.420e-32	76.32	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KI39_9PHAE	1.930e-31	76.39	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KT99_9PHAE	3.650e-31	76.32	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JWW3_9PHAE	3.890e-31	76.32	MULE domain-containing protein n=2 Tax=Ectocarpus ...	[more]
A0A6H5L4W3_9PHAE	2.520e-30	74.29	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JKB9_9PHAE	1.340e-24	80.70	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KXG9_9PHAE	1.590e-24	57.50	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K6N6_9PHAE	5.810e-24	80.70	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JF90_9PHAE	2.310e-18	53.42	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig677	contig	P-littoralis_Contig677:16641..17362 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Model size	561
Hectar predicted targeting category	other localisation
Exons	2
Cds size	528

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680791406.2472885-CDS-P-littoralis_Contig677:16640..16845	1680791406.2472885-CDS-P-littoralis_Contig677:16640..16845	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig677 16641..16845 -
1680791406.2605233-CDS-P-littoralis_Contig677:17008..17331	1680791406.2605233-CDS-P-littoralis_Contig677:17008..17331	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig677 17009..17331 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680791406.2724376-UTR-P-littoralis_Contig677:17331..17362	1680791406.2724376-UTR-P-littoralis_Contig677:17331..17362	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig677 17332..17362 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig677.1.1	prot_P-littoralis_Contig677.1.1	Pylaiella littoralis U1_48	polypeptide	P-littoralis_Contig677 16641..17331 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-littoralis_Contig677:16641..17362-
coding sequence from alignment at P-littoralis_Contig677:16641..17362-

protein sequence of mRNA_P-littoralis_Contig677.1.1

>prot_P-littoralis_Contig677.1.1 ID=prot_P-littoralis_Contig677.1.1|Name=mRNA_P-littoralis_Contig677.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=176bp
MCRSLHNFSDEFMCEKVDMLGEDKEDKFEHWGRRPECVAGKCSNCGFGNP
NGIPTDCLLSVARHIEWWDGSVSRIKRWRTARRIRSSSYRRSDRCVTFGT
SSWSTPRSTSSTMNWRSGSARPTTCAWGRSARASRVDWHIWYFQVVPVRG
GRGGTARESGCLCRCADSRRPSRSKR

mRNA from alignment at P-littoralis_Contig677:16641..17362-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-littoralis_Contig677.1.1 ID=mRNA_P-littoralis_Contig677.1.1|Name=mRNA_P-littoralis_Contig677.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=722bp|location=Sequence derived from alignment at P-littoralis_Contig677:16641..17362- (Pylaiella littoralis U1_48)
AGGCGGGGAAGGTTGTAAGAAGTGGTTGGGAATGTGTAGATCTTTGCACA
ATTTCTCTGACGAATTCATGTGCGAGAAGGTGGATATGTTGGGGGAGGAT
AAGGAGGATAAGTTTGAGCACTGGGGGAGGAGGCCGGAGTGCGTTGCGGG
CAAGTGTTCAAATTGCGGGTTTGGGAACCCAAATGGCATTCCTACCGACT
GTTTGCTCTCGGTCGCGCGGCACATAGAATGGTGGGATGGATCCGTTTCC
AGGATCAAAAGATGGAGGACGGCAAGACGCATAAGAAGCAGCAGCTACCG
CAGGTCGGACCGTTGCGTGACCTTTGGGACGAGTTCATGGAGCACTCCAA
GAAGGTGAGAAGGTGAACTTATCAACACGACGATTTTTTGCTGTAATTTT
CGTATCACTTGGTCAAAGTGTAATTCTCGTTTCATGTTTCAATCAACAAG
TAATTTAGGAGCAGGCACCTGAACTGTTATCCGCTCCCCCCTCTTCCTGC
CCCCCCCCGCCCCGCAGTACATCGAGCACCATGAACTGGCGAAGTGGCAG
CGCAAGGCCCACAACATGTGCTTGGGGACGTTCCGCAAGGGCGAGTAGAG
TTGACTGGCATATCTGGTACTTCCAAGTTGTACCAGTTCGTGGGGGTAGA
GGAGGAACAGCAAGAGAGTCTGGGTGTTTGTGTAGGTGTGCAGACAGCAG
ACGGCCAAGTCGTAGCAAACGG

Coding sequence (CDS) from alignment at P-littoralis_Contig677:16641..17362-

>mRNA_P-littoralis_Contig677.1.1 ID=mRNA_P-littoralis_Contig677.1.1|Name=mRNA_P-littoralis_Contig677.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=528bp|location=Sequence derived from alignment at P-littoralis_Contig677:16641..17362- (Pylaiella littoralis U1_48)
ATGTGTAGATCTTTGCACAATTTCTCTGACGAATTCATGTGCGAGAAGGT
GGATATGTTGGGGGAGGATAAGGAGGATAAGTTTGAGCACTGGGGGAGGA
GGCCGGAGTGCGTTGCGGGCAAGTGTTCAAATTGCGGGTTTGGGAACCCA
AATGGCATTCCTACCGACTGTTTGCTCTCGGTCGCGCGGCACATAGAATG
GTGGGATGGATCCGTTTCCAGGATCAAAAGATGGAGGACGGCAAGACGCA
TAAGAAGCAGCAGCTACCGCAGGTCGGACCGTTGCGTGACCTTTGGGACG
AGTTCATGGAGCACTCCAAGAAGTACATCGAGCACCATGAACTGGCGAAG
TGGCAGCGCAAGGCCCACAACATGTGCTTGGGGACGTTCCGCAAGGGCGA
GTAGAGTTGACTGGCATATCTGGTACTTCCAAGTTGTACCAGTTCGTGGG
GGTAGAGGAGGAACAGCAAGAGAGTCTGGGTGTTTGTGTAGGTGTGCAGA
CAGCAGACGGCCAAGTCGTAGCAAACGG