mRNA_P-littoralis_Contig676.24.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig676.24.1
Unique NamemRNA_P-littoralis_Contig676.24.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig676.24.1 vs. uniprot
Match: D7G4Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Z8_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 1.070e-30
Identity = 65/116 (56.03%), Postives = 81/116 (69.83%), Query Frame = 1 
Query:    1 MSALSKCSPLKRKQGGSTA--AKPRALFAAGNPDWPCLDKDCPDGRLKVCLRKKDNKEYATCDQNIWNDKNTCKVTLSMLLASKDHPHACQLCLCDVGGYPSIGIPTEEKDDRGYT 342
            M+ LSK SPLKRKQ  ++A   KPRAL   G   WPC D +  DG LKV ++KK+  ++ TCDQNIW D+ +CKV+LS+L  S+DHPH C LCL DVGG PS+G  T E D RGY+
Sbjct:  624 MNTLSKASPLKRKQQQASAPIVKPRALLTLGVEGWPCPDDNSTDGLLKV-VKKKNGGDFLTCDQNIWKDETSCKVSLSLLKPSQDHPHECSLCLKDVGGTPSLGTDTGETDSRGYS 738
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BLAST of mRNA_P-littoralis_Contig676.24.1 vs. uniprot
Match: A0A6H5JXZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXZ5_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 4.440e-14
Identity = 43/105 (40.95%), Postives = 60/105 (57.14%), Query Frame = 1 
Query:   22 SPLKRKQGGSTAAKPRALFAAGNPDWPCLDKDCPDGRLKVCLRKKDNKEYATCDQNIWNDKNTCKVTLSMLLASKDHPHACQLCLCDVGGYPSIGIPTEEKDDRG 336
            SP K+ +  S+ +K +  F AGNP WPC    C  G LK  + K +   ++ CDQ    D  TC+V+ S+L A    P  CQLCL  VGG PS+G+ + EK+ +G
Sbjct:    5 SPAKKIKSSSSTSKRK--FIAGNPLWPCPSIVCVPGLLKA-VPKTNGGLFSPCDQKDSQDSTTCQVSCSILSARGSDPPICQLCLTSVGGTPSLGVLSGEKNSQG 106
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig676.24.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4Z8_ECTSI1.070e-3056.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXZ5_9PHAE4.440e-1440.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig676contigP-littoralis_Contig676:106273..108545 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G4Z8
PFAMsDimer_Tnp_hAT
Model size1077
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue7.22e-35
EggNOG OGs2CZK4@1|root,2SARG@2759|Eukaryota
Cds size348
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791406.0226812-UTR-P-littoralis_Contig676:106272..1070011680791406.0226812-UTR-P-littoralis_Contig676:106272..107001Pylaiella littoralis U1_48UTRP-littoralis_Contig676 106273..107001 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791406.0397425-CDS-P-littoralis_Contig676:107001..1070061680791406.0397425-CDS-P-littoralis_Contig676:107001..107006Pylaiella littoralis U1_48CDSP-littoralis_Contig676 107002..107006 -
1680791406.0527666-CDS-P-littoralis_Contig676:107721..1078481680791406.0527666-CDS-P-littoralis_Contig676:107721..107848Pylaiella littoralis U1_48CDSP-littoralis_Contig676 107722..107848 -
1680791406.0715597-CDS-P-littoralis_Contig676:108329..1085451680791406.0715597-CDS-P-littoralis_Contig676:108329..108545Pylaiella littoralis U1_48CDSP-littoralis_Contig676 108330..108545 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig676.24.1prot_P-littoralis_Contig676.24.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig676 107002..108545 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig676.24.1

>prot_P-littoralis_Contig676.24.1 ID=prot_P-littoralis_Contig676.24.1|Name=mRNA_P-littoralis_Contig676.24.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=116bp
MSALSKCSPLKRKQGGSTAAKPRALFAAGNPDWPCLDKDCPDGRLKVCLR
KKDNKEYATCDQNIWNDKNTCKVTLSMLLASKDHPHACQLCLCDVGGYPS
IGIPTEEKDDRGYTG*
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mRNA from alignment at P-littoralis_Contig676:106273..108545-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig676.24.1 ID=mRNA_P-littoralis_Contig676.24.1|Name=mRNA_P-littoralis_Contig676.24.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2273bp|location=Sequence derived from alignment at P-littoralis_Contig676:106273..108545- (Pylaiella littoralis U1_48)
ATGAGTGCGTTATCGAAGTGTTCACCACTGAAACGTAAGCAAGGCGGCAG
CACCGCAGCAAAGCCCAGGGCCCTCTTTGCGGCTGGCAACCCGGACTGGC
CCTGCCTCGACAAGGACTGCCCTGACGGTCGACTGAAGGTCTGCCTTCGT
AAAAAAGATAACAAAGAATACGCGACGTGCGATCAAAACATCTGGAACGA
CAAGAACACTTGCAAGGTATGTTTAGGTTGAAATGTCATGTGTGTGTACA
TGAATCTAATGCTCGTTTGTTCAAGTGCTGCAGACCGTGTGTTGGGGGTG
TCGGTGTGGAGTGAGTTGCATGTATGTGCTCTGTGCACCGCCTGTGTGTT
GCATTTTGTGTGTTCTTTACGAACCCTTTGATGACCCTCACGAATGATTT
TGTATAATATTTCGATAATATTTTCCTACGTCTTTCAACAACCATCATCG
TTCTTTTTTTGCATTGCATATGTCCAAGCTGCTCCACTGCCACAACTGTA
GCTGTGCCCTGAATCTGTTGCTCGTTTGTTTCAGTCCTGCAGACGGTGTG
TTGCTGATGACAATGTGGTCTCCGGATTGCACGTGCTGTCTTTTCACATG
TATGTGTGTTCGTAGTGCCGGAATTTTTTTCTCTGTTCTTCCGTCTTTCA
ACAATATCAGCACTTCGTTTTTTTTTTCATGCCCCGTATATTTCAAGGTC
ACGCTTTCCATGCTACTCGCCAGCAAGGACCATCCACACGCCTGCCAGCT
CTGCCTCTGTGACGTCGGGGGGTACCCTTCAATCGGTATCCCGACCGAAG
AAAAAGACGATCGTGGATACACGGGTGAGCAAACTTGGGGCGAGAGCTTG
GTCCGGTCCGTTTTTTTGCCGTCGGGATTTTTTTTGCCGTCGGGAGGTTT
CGTCCCGTTGTGCCGTCGGGAGGTTGTCCTCCCGTTGGTCCGTACACAGA
AAATGTCGTTTACTCTCCCTTCATCCACGCCGCCAACGATACATCCCCAC
CATCACTTTCCCCGAATTCACCACCGCCAACTTTACCTCCACCACCACCG
CAACCTGTATGGACAGTTCAGCATGAGATTGGTGACGGAGCTTGTGGCTT
TAGGGCAATTGCTAGACGTTTCCTCGGTGATCCTGAGTTGCACTTACAAG
CACGACATCATATTGTACTGTACCTCGCACACAACAGTCACGACGACAAC
CTACACATCCACGACGGCATTGACACAGAACTTCTATACTGTTCAGGGTT
ACCGCCCTCTACTTACTGCTCATACGAAGACTACCTCTCAAGAATGTCTA
TGTCTACCACGTACATGGGCCAACCGGAAATTACTGCAGCCATCGCTGTG
TATGGAACCCCTATAATTCCACACTTCGATAGTTCTACCTTACCGCAGCC
AGCCATCGCCGATCCTAATGTACTCCACTTAAGATTCACACCTGCCTCAC
GTCATTACGATACATTCGCCATATCCAACCTTAACACTCAACACTAACAT
GACACGTTACAATTCGACGCCCGACTATTTCCTGTTCAGGATGACTCCGT
TCCACAAGCGCGGAGTCGACTGCTCGCGACTGCTCGCCACACCATCGTGA
CGCTCTCATGGTGTGCGGAAACAATTGGGCAATTTCGGGCCTGCTGTGTC
GTTCACCACCTGGAACTGCATGCTTGCCCATAGTCACAACCACCTGACTT
GCAGCACCACGTCTGCGTGGGCCAATTTTGGTCTTCCGGTTGCCTTTTAC
CATAGCTGTGCCATAGACATACCTTTGGCACCGTTCAACTACGATACGTA
GGGTTAGGGTTAAGGTTAGTGGTTGGTGCTGAGTGTGGATGAGGGGGGCT
GTTGAAATGTTTCCGTGTCCTTCGTGTGGTACGTGTTCGACAAGTCTTAG
ATTGCGTTTTACAGTAGCTCGGCCGTAGGTCTTATTTTTGTTGGAGTGGT
TCCGTTTCCTTGGCGTCTTCTGTCCCCCAGCTGGCGATTAATTTGTCCAT
CGCTCTTACGCTTTCGGCCTTCTTCCTATCTTTTAAGTGCCGTTGATTTA
TGTTCCTTCGTGGGGTACATATTGAGGTATGTACATGTTGAGGAAGGTAC
ATGTTGAGGTCTCCATGATCTTTTCGTTATTATTACGCTTCCCCTTCTTT
CGGCATAGGTTTCCTGTGGTATCCAGCCTCTAGCGTTGCTAGGTATGCTG
ACGAGTATTTTGGATGAGCGTTCGTTTCGTTGTTGCCTTGACTTCGCTGC
TCTGTAGATTTGTCTTAGATTTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig676:106273..108545-

>mRNA_P-littoralis_Contig676.24.1 ID=mRNA_P-littoralis_Contig676.24.1|Name=mRNA_P-littoralis_Contig676.24.1|organism=Pylaiella littoralis U1_48|type=CDS|length=348bp|location=Sequence derived from alignment at P-littoralis_Contig676:106273..108545- (Pylaiella littoralis U1_48)
ATGAGTGCGTTATCGAAGTGTTCACCACTGAAACGTAAGCAAGGCGGCAG
CACCGCAGCAAAGCCCAGGGCCCTCTTTGCGGCTGGCAACCCGGACTGGC
CCTGCCTCGACAAGGACTGCCCTGACGGTCGACTGAAGGTCTGCCTTCGT
AAAAAAGATAACAAAGAATACGCGACGTGCGATCAAAACATCTGGAACGA
CAAGAACACTTGCAAGGTCACGCTTTCCATGCTACTCGCCAGCAAGGACC
ATCCACACGCCTGCCAGCTCTGCCTCTGTGACGTCGGGGGGTACCCTTCA
ATCGGTATCCCGACCGAAGAAAAAGACGATCGTGGATACACGGGATGA
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