mRNA_P-littoralis_Contig117.86.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig117.86.2
Unique NamemRNA_P-littoralis_Contig117.86.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig117.86.2 vs. uniprot
Match: A0A6H5L632_9PHAE (Na_H_Exchanger domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L632_9PHAE)

HSP 1 Score: 219 bits (559), Expect = 1.180e-64
Identity = 125/173 (72.25%), Postives = 137/173 (79.19%), Query Frame = 1 
Query:    4 GVGVGVGFHPG----------TAVGNETEAKSLKDAKVGLDSLRIIETEVEKHVEELLGLFTVEAQVANRGQGKGGRKYQAAALGVQQEVEDIRSELVKLLRTLSTTNAGILGAEHELKEKDLELVQLHAIEEVEGAKDKLTGGQVKVDYATGRIRWDEEG--GNAKADKTNS 486
            GV  GVG HPG           A GN+TEAKSL DAKVGL SLR IETEVEKHVEELLGLFT EAQ        GGRKYQAAA GVQ+EVEDIRSELVKLLRTL+TT+AGILGAEHE+++K+LELVQLHAIEEVEGAKDKLTGG+VKVDYATG IRWDEE   G+ K +K  +
Sbjct:  330 GVQGGVGEHPGGTMPGARAGAAAAGNDTEAKSLVDAKVGLASLRTIETEVEKHVEELLGLFTAEAQ--------GGRKYQAAARGVQEEVEDIRSELVKLLRTLNTTDAGILGAEHEMQKKELELVQLHAIEEVEGAKDKLTGGKVKVDYATGNIRWDEEDLTGDTKGEKVGT 494
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BLAST of mRNA_P-littoralis_Contig117.86.2 vs. uniprot
Match: D7FYX0_ECTSI (Na_H_Exchanger domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYX0_ECTSI)

HSP 1 Score: 213 bits (542), Expect = 1.950e-62
Identity = 117/148 (79.05%), Postives = 128/148 (86.49%), Query Frame = 1 
Query:   40 AVGNETEAKSLKDAKVGLDSLRIIETEVEKHVEELLGLFTVEAQVANRGQGKGGRKYQAAALGVQQEVEDIRSELVKLLRTLSTTNAGILGAEHELKEKDLELVQLHAIEEVEGAKDKLTGGQVKVDYATGRIRWDEEG--GNAKADK 477
            A GNETEAKSL DAKVGL SLR IETEVEKHVEELLGLF+ EAQ        GGRKYQAAA GVQ+EVEDIRSELVKLLRTL+TT+AGILGAEHE+++K+LELVQLHAIEEVEGAKDKLT G+VKVDYATG+IRWDEE   G+ K DK
Sbjct:    8 AAGNETEAKSLVDAKVGLASLRTIETEVEKHVEELLGLFSAEAQ--------GGRKYQAAAQGVQEEVEDIRSELVKLLRTLNTTDAGILGAEHEMQKKELELVQLHAIEEVEGAKDKLTDGKVKVDYATGKIRWDEEDLTGDTKGDK 147
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig117.86.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L632_9PHAE1.180e-6472.25Na_H_Exchanger domain-containing protein n=1 Tax=E... [more]
D7FYX0_ECTSI1.950e-6279.05Na_H_Exchanger domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig117contigP-littoralis_Contig117:308966..312438 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FYX0
Preferred nameTMCO3
PFAMsNa_H_Exchanger
Model size538
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005215,GO:0005575,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008324,GO:0015075,GO:0015318,GO:0016020,GO:0022857,GO:0022890,GO:0034220,GO:0051179,GO:0051234,GO:0055085,GO:0098655
Exons5
Evalue3.2e-63
EggNOG OGsCOG0475@1|root,KOG1650@2759|Eukaryota
Ec32 ortholog descriptionCation/H exchanger
Ec32 orthologEc-19_002770.1
Descriptionsolute:proton antiporter activity
Cds size534
COG categoryP
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789489.1398509-CDS-P-littoralis_Contig117:308967..3090661680789489.1398509-CDS-P-littoralis_Contig117:308967..309066Pylaiella littoralis U1_48CDSP-littoralis_Contig117 308968..309066 -
1680789489.1512709-CDS-P-littoralis_Contig117:309896..3099951680789489.1512709-CDS-P-littoralis_Contig117:309896..309995Pylaiella littoralis U1_48CDSP-littoralis_Contig117 309897..309995 -
1680789489.1612265-CDS-P-littoralis_Contig117:310877..3110411680789489.1612265-CDS-P-littoralis_Contig117:310877..311041Pylaiella littoralis U1_48CDSP-littoralis_Contig117 310878..311041 -
1680789489.1759465-CDS-P-littoralis_Contig117:311983..3120711680789489.1759465-CDS-P-littoralis_Contig117:311983..312071Pylaiella littoralis U1_48CDSP-littoralis_Contig117 311984..312071 -
1680789489.1862125-CDS-P-littoralis_Contig117:312354..3124381680789489.1862125-CDS-P-littoralis_Contig117:312354..312438Pylaiella littoralis U1_48CDSP-littoralis_Contig117 312355..312438 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig117.86.2prot_P-littoralis_Contig117.86.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig117 308968..312438 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig117.86.2

>prot_P-littoralis_Contig117.86.2 ID=prot_P-littoralis_Contig117.86.2|Name=mRNA_P-littoralis_Contig117.86.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=178bp
RGVGVGVGFHPGTAVGNETEAKSLKDAKVGLDSLRIIETEVEKHVEELLG
LFTVEAQVANRGQGKGGRKYQAAALGVQQEVEDIRSELVKLLRTLSTTNA
GILGAEHELKEKDLELVQLHAIEEVEGAKDKLTGGQVKVDYATGRIRWDE
EGGNAKADKTNSASLDGKGGGGEGGGGG
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mRNA from alignment at P-littoralis_Contig117:308966..312438-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig117.86.2 ID=mRNA_P-littoralis_Contig117.86.2|Name=mRNA_P-littoralis_Contig117.86.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=3473bp|location=Sequence derived from alignment at P-littoralis_Contig117:308966..312438- (Pylaiella littoralis U1_48)
AGAGGAGTAGGAGTAGGAGTAGGATTCCACCCCGGAACAGCAGTGGGGAA
CGAGACCGAAGCAAAAAGCTTGAAGGACGCGAAGGTGCTATCATACTGTC
TGTGCATGCGGTGGTGCTTGTGTTTGTGCGTTGCGTTGTGATGGAGGGAA
TAACGGGAACCGGGTGGCGTGTGACCGGCGGGTGTTTTGATCAAACGTTG
TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTAGCTGCTGCTGCT
GCTGCCTCTGCTGCCGTTGTTTGCTATTCTCATCTCTATAATTATTGTTG
TTGCTGGCGAGTCTTTGTGCTGGTCAAGGATAACATCGGACTTTTGCAAC
TGTGACGAACATGACAGGTCGGTCTCGACAGCCTGCGAATAATCGAAACG
GAGGTAGAGAAACACGTCGAGGAGCTGCTCGGTCTGTTCACCGTCGAGGC
CCAAGGTGCGAAGCATGACAACAAGTCTGCCTGTCTGTCGATTTAATTGC
CTGCCTGGCTTTCTGTCTGTCTGTGTGTCTATCTATCTGTCTGCCTTTCC
ATCTATCTGTCTGTGTGTCTATCTCTCTGTCTGGCTGTCTATATCTGCCT
GTCTGTCTGTCTGCCTGTCTGTCTATCTACCGTCTGTCTTCTGTCTCAAT
CAGCCTCTATCCCTCGTTCGCTCTCTTGTCCACACCAGCAGTAGTTGTTT
TTTCGCCTCCTTGACAATGAATTAATCTGTCTGGTTCGTCCGGTGTAATC
ATGAAGTAGGTATGAACACCTTGTCTGATGTTCGTTCCGCCGTGTGGATT
GATTCAGGATCCGACTCGACAGGCAGCCACATCGATATGCACAGACGAAT
ACACAGACAGACAGACAGGAACAAAGAACAGATGAAAACGGTCAGATAGA
CGGATGAGACGGGCTGGCTGTCTGTTTCGTGTGATGACACTGAGTGATCG
TCGATGAACAGACATATGGAGACCGGGTGGTCGGCTTCCCAAGACTCTCG
CCACTGCAAAATAAGACCTTCAGGCTGCATTTTATGTCTAGTGACCATTC
CTGCATAATGAGTTTCTGTTTTTTTTTTTCGTACTACCGTGCTAGTGGCA
TCCTGTGGGGGTGGTGTGGCAACTCAGTGTGTTAGATTCAAGCTGTTTTT
GGCGTGCACACACGTGTGTGTGTGTTTGTCGTATTGGCAAAGACCGGGCT
GAGCGGGCCAAAACTAAAATGTACCATGTGTGCATGTGTGTGACTGCTGT
TTATGTTTTAGTGTGCGTGCATATTTGCTTGTCTTTTGTGTGTGCGATTG
TGTATTCTTTCTCTCTCTCTGTGTGTGTTTTTTTTTTTTTTACGTGTGAC
TTGGGTTTTCTCCGTTCATTTTTCTCGCCCGAAATCTGTGCACGAAGTCG
CCAACCGGGGACAAGGCAAAGGTGGCCGAAAGTACCAGGCAGCGGCTCTT
GGAGTGCAGCAAGAGGTGGAGGACATCCGCTCGGAACTGGTGAAGCTCTT
GAGGACGCTCAGCACTACCAACGCCGGCATTCTTGGCGCCGAGCACGAGC
TGAAAGAAAAGGTACAGCGGTAGTGGCAGTGCCGGATGGGTGGTGGGTTG
CAGGAAAAGGCAGAGTAGTGCCATGAGGGACACCGGGGAGAGAGATGGGG
GACGGTGCAATTTGTCAATCGTGTTTTTCACCCACGTGTGGCTTTCAAGG
CGATTCCCCGCGGATATGTGCTCTCCAATGATACAAGCGTGTTTTTTGTT
TATTGCGACGAGAGGAGCAGCAGCGGCGGAGTGCATCAAAGCGCTCCTGC
TCAGCCCCATCAATCGCTATTCCGGCGTCTATTGCAGCAAAAGAGACACG
ATTCTGTTCATCATCCTGCATTGAGGGAAATGGTTGCTCGGACTCTGTCT
CTACCCCCCCTCCGTGAGTGTTACTAACTGTGTTGAGGAACTTTTCCAAC
TCGAAAGTGTTGATCTCGATCATCGGAGCAGTATTGGGTGCGGAATCCAG
AGGCGTGCGGGGGGCGTGGTATGAATGTGTGCGTGTCGTACGCGGTGAAG
GAAGGACAGCTACTGCTGCTCGACGCTAGCAAGTGAAAGACGAGTCCTCC
TTGTCTGCCGTTCGCATTTTTTGGCACACCTTCCGCCCGACGGTTAGGTG
ACTGTACCTTCCTACGGTATGTGCACTACTTCAAAGCCAAAAAGAGGAAC
GAGTGTGTAACATTGCCAATATTAAGTGAGCGTAATCTAGTACGAGTGGT
GTATATCATGTATCAGGCGTACATGGCGTAAGCGTTCGACGCCGGCGGTG
TTCTCACTCGCCCCCCGCCCCCGTCCCCCGAAAAAATCCATTTTTTTTTT
GTGTCCGACGCAGCGGTTCCAACCAGCCGCCCCCCCTCCCCCCGCCCTCC
CCCCGAACCCCCACCGCACCTCAACAAAACCAACCCAACGAAGGACTTAG
AGCTGGTGCAGCTGCACGCCATCGAGGAAGTGGAGGGAGCGAAGGACAAG
CTGACGGGGGGGCAAGTGAAGGTCGATTATGCCACGGGGAGGGTGAGGAG
GACGAGGAGGAGGAGGGGGGGGGTCGTTTCGCGTTTTCGTCTCATCATGG
AAAGCACACGTGTCGTGTCATGTGAAGCGCTGTGATACAGCTAGCAGGCC
GCACGCGGGGCGACCTTTTTCTCCACCGGTTGTTTGTGACGCGGAAAACA
CGCAGCCGTTGCGCTTTGGCAATACTGCTGTTATGTAGCAGGGGAGGTAT
ACCAGTGTGTGGTATGACATATAGATTTGATGTCAGCCAGATGTAAGCAC
AAATACATGGGTGCGTTTGCATACATAGTTCCCACGTTTTTGTTGTCTCG
TTTTAAACGGTGTGTAGATCAACAAAAAAGGGTTGACCATGCGCTTCCTG
TTGGTATGTTTGCTGACTGCTGTGCGTTTTTTTGTTTTTTTCGAAGTATT
TGTTACGAAGCAATTTAATTTTCTTCGTATTTACTTGGAAGTATGAGTTT
TCCGTGTCGTGGGATATGGTTGTGACATTATTGCGGATCTTCACTGAACG
TGGATACAACGGTCAGATTAGATGGATAGATGGGGCACAGGGGGGTGCGA
CGACTTGAGCAGCAAAAAGAACTGTGATGTGTGGAAATTGAACACACAAA
CCCTTTTTTGGCATCAACCCCTCCCACCCCACCCCCTATACCCCGAGCCA
TTCTTGTTCAATGAGTTGTTGCGCTGCTGTTGTAGCGTTGCGAGTGCTGA
TGAACGCTACGTGTGCTGCATTGAAACTGTCATGTGACACGGCACGAGTT
TCGAAACTGGTGTTGAAAGTAGACATCGCAAGATGAAGACATTGTAACCT
CTGCGTCGAAACTACTCTGCAGATCCGATGGGACGAGGAAGGCGGCAACG
CCAAGGCAGACAAGACGAACTCCGCCAGTTTGGACGGCAAGGGCGGGGGC
GGTGAGGGCGGCGGAGGCGGCGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig117:308966..312438-

>mRNA_P-littoralis_Contig117.86.2 ID=mRNA_P-littoralis_Contig117.86.2|Name=mRNA_P-littoralis_Contig117.86.2|organism=Pylaiella littoralis U1_48|type=CDS|length=534bp|location=Sequence derived from alignment at P-littoralis_Contig117:308966..312438- (Pylaiella littoralis U1_48)
AGAGGAGTAGGAGTAGGAGTAGGATTCCACCCCGGAACAGCAGTGGGGAA
CGAGACCGAAGCAAAAAGCTTGAAGGACGCGAAGGTCGGTCTCGACAGCC
TGCGAATAATCGAAACGGAGGTAGAGAAACACGTCGAGGAGCTGCTCGGT
CTGTTCACCGTCGAGGCCCAAGTCGCCAACCGGGGACAAGGCAAAGGTGG
CCGAAAGTACCAGGCAGCGGCTCTTGGAGTGCAGCAAGAGGTGGAGGACA
TCCGCTCGGAACTGGTGAAGCTCTTGAGGACGCTCAGCACTACCAACGCC
GGCATTCTTGGCGCCGAGCACGAGCTGAAAGAAAAGGACTTAGAGCTGGT
GCAGCTGCACGCCATCGAGGAAGTGGAGGGAGCGAAGGACAAGCTGACGG
GGGGGCAAGTGAAGGTCGATTATGCCACGGGGAGGATCCGATGGGACGAG
GAAGGCGGCAACGCCAAGGCAGACAAGACGAACTCCGCCAGTTTGGACGG
CAAGGGCGGGGGCGGTGAGGGCGGCGGAGGCGGC
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