mRNA_P-littoralis_Contig675.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig675.6.1
Unique NamemRNA_P-littoralis_Contig675.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig675.6.1 vs. uniprot
Match: D8LGF3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGF3_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 1.020e-47
Identity = 83/97 (85.57%), Postives = 86/97 (88.66%), Query Frame = 1 
Query:    1 MAGSDSETFRPCRRVLTPGFSGAKHARLQRLARIEPSPRVTPRPTGLRTNAAASRRSGYDIPDPGLVLQSKHVTVDDTGRAAKERVSGELTLEKAVG 291
            MAGS +E FRPCRRVLTPGFSG + AR Q LARIE SPRVTPRPTGLRTNA ASRRSGYDIPDPGLVLQSKHV +DDTGR AKERVSGELTLEKA G
Sbjct:    1 MAGSATEQFRPCRRVLTPGFSGTEEARPQGLARIESSPRVTPRPTGLRTNAKASRRSGYDIPDPGLVLQSKHVVMDDTGRPAKERVSGELTLEKAFG 97
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BLAST of mRNA_P-littoralis_Contig675.6.1 vs. uniprot
Match: A0A7S3Y032_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y032_HETAK)

HSP 1 Score: 136 bits (343), Expect = 4.500e-36
Identity = 93/234 (39.74%), Postives = 128/234 (54.70%), Query Frame = 1 
Query:   25 FRPCRRVLTPGFSGAKHARLQRLARI-EPSPRVT--PRPTGLRTNAAASRRSGYDIPDPGLVLQSKHVTVDDTGRAAKERVSGELTLEKAVGLKRKVNSQREKRGGVPAKGNPGDKLFHHVDYSPGFHQRGELIVGSSF--YRTMPRRGGGHRAPGSVTVPAAVPEGVGYA-LGYRKPKMAFHETRQASQYLEDLRGVLELTEAAPVPAAAGQEVGPSWEEKTGMHTWPINEKS 708
            FRP RRVL P  +GA   R + L R+ EP+ +      P G R N A +RRSGYD+P+P L +  K +  D  G  A+E VS E TLE  + +KRKV      R G+P   NPGDK + HVDYS  +H+ G L+ GS+F  YR   ++   +R+   +        G+G A + Y KP+M F E R   Q +++L  V  LT A+        E  PSWE++TGMHT+    K+
Sbjct:    1 FRPARRVLGPARTGADVPRPEGLRRLPEPTGKAPWDELPQGRRANPAGARRSGYDVPEPDLHMDRKSMVPDKNGALARETVSMERTLETFMTVKRKVPDAAGLRNGIPV-ANPGDKAYTHVDYSRDYHKGGGLVPGSTFALYR---KKSEDYRSNEQLQSK----NGMGAAAVNYMKPQMTFQEKRLMKQLMDELNDVRSLTNAS----TGYDEDIPSWEDRTGMHTYKTKNKN 222
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BLAST of mRNA_P-littoralis_Contig675.6.1 vs. uniprot
Match: A0A835YX95_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX95_9STRA)

HSP 1 Score: 112 bits (279), Expect = 4.480e-26
Identity = 73/164 (44.51%), Postives = 93/164 (56.71%), Query Frame = 1 
Query:   10 SDSETFRPCRRVLTPGFSGAKHARLQRLARIEPSPR--VTPRPTG----------LRTNAAASRRSGYDIPDPGLVLQSKHVTVDD--TGRAAKERVSGELTLEKAVGLKRKVNSQREKRGGVPAKGNPGDKLFHHVDYSPGFHQRGELIVGSSFYRTMPRRGG 459
            SD+  FRP  R+        + A+ +R     P+ R   +P PTG          LR     SRRSG+D+PDP L LQ K V V D  TG  AK+ VSGELTLE+  G+K K+   R  R  + A+  PGDKL+HHVDYSPGF++ G  +VGS+F R   R GG
Sbjct:   42 SDTAAFRPHIRI-------DEQAKARRGREASPTGRKHFSPEPTGDGRAASARPGLRQIPELSRRSGFDMPDPDLSLQRKRVVVADAATGAFAKDHVSGELTLERTFGVKHKLAEMRGVRNAI-AQACPGDKLYHHVDYSPGFYREGGHVVGSTFVRDAARVGG 197
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig675.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LGF3_ECTSI1.020e-4785.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3Y032_HETAK4.500e-3639.74Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835YX95_9STRA4.480e-2644.51Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig675contigP-littoralis_Contig675:13889..16126 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size714
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-16_003840.1
Cds size714
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791404.5193217-CDS-P-littoralis_Contig675:13888..140891680791404.5193217-CDS-P-littoralis_Contig675:13888..14089Pylaiella littoralis U1_48CDSP-littoralis_Contig675 13889..14089 +
1680791404.531524-CDS-P-littoralis_Contig675:14641..147291680791404.531524-CDS-P-littoralis_Contig675:14641..14729Pylaiella littoralis U1_48CDSP-littoralis_Contig675 14642..14729 +
1680791404.5453823-CDS-P-littoralis_Contig675:14990..151381680791404.5453823-CDS-P-littoralis_Contig675:14990..15138Pylaiella littoralis U1_48CDSP-littoralis_Contig675 14991..15138 +
1680791404.5591242-CDS-P-littoralis_Contig675:15467..156421680791404.5591242-CDS-P-littoralis_Contig675:15467..15642Pylaiella littoralis U1_48CDSP-littoralis_Contig675 15468..15642 +
1680791404.572864-CDS-P-littoralis_Contig675:16024..161261680791404.572864-CDS-P-littoralis_Contig675:16024..16126Pylaiella littoralis U1_48CDSP-littoralis_Contig675 16025..16126 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig675.6.1prot_P-littoralis_Contig675.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig675 13889..16126 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig675.6.1

>prot_P-littoralis_Contig675.6.1 ID=prot_P-littoralis_Contig675.6.1|Name=mRNA_P-littoralis_Contig675.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=238bp
MAGSDSETFRPCRRVLTPGFSGAKHARLQRLARIEPSPRVTPRPTGLRTN
AAASRRSGYDIPDPGLVLQSKHVTVDDTGRAAKERVSGELTLEKAVGLKR
KVNSQREKRGGVPAKGNPGDKLFHHVDYSPGFHQRGELIVGSSFYRTMPR
RGGGHRAPGSVTVPAAVPEGVGYALGYRKPKMAFHETRQASQYLEDLRGV
LELTEAAPVPAAAGQEVGPSWEEKTGMHTWPINEKSSP
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mRNA from alignment at P-littoralis_Contig675:13889..16126+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig675.6.1 ID=mRNA_P-littoralis_Contig675.6.1|Name=mRNA_P-littoralis_Contig675.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2238bp|location=Sequence derived from alignment at P-littoralis_Contig675:13889..16126+ (Pylaiella littoralis U1_48)
ATGGCGGGTTCCGACAGCGAGACATTCCGGCCTTGTCGCAGGGTGCTCAC
GCCGGGCTTTTCCGGAGCGAAGCACGCGCGCTTGCAACGGCTGGCGAGGA
TCGAACCCTCGCCGCGCGTGACTCCTAGGCCGACAGGCCTGCGCACTAAC
GCAGCGGCATCCCGCCGATCAGGGTATGACATCCCCGATCCCGGTCTCGT
GGTGAGCAAGTGTACGCCAGATATTGCTATCGCAGTGGGTTTAAGGGGCC
GTGTCCAGATACAACTTTCGTAGTGGCTTTAAGTGGCCGTGTCATTCCTG
TCATCGTATGATATACAAGTAGTACCATTGAGTGAAGCCGGGGACGACTT
TGATTGCAATATATTTTCGCCAGAAACGCCCTGTCAAGCCAAAGAGATAC
CAGCATGCAAGTATCTTGTGGTAGTCAGCGAAGAGACACTTGGTGCGTGC
TGATTTTACTAGCTGTCGCTTTTGAATCGAAAACCTCCATATCAGCGGGA
TCTTCGAAGGAATACCTGCCGTGTATACCATGTTTTTTTTGTAAAACTTG
TGTATTTTGAGCATCGACGGAAGTGTCTGCGGGAGGGAGGACCAAAATTT
CGTGGGCTGGGCAGAACGATAAAACGAACTAAAAGACTCGCAGGTTCACA
GCACGTTCGAGCTTCAAAGAAGGTAACCAGACCCACTGGGAGCACGGCCC
TCTCTTTCGCTTTCGCTGCTTGTTCCTTGTTCTGGTTTACCTACTTTCTC
TAGCTGCAATCAAAGCACGTGACAGTGGATGACACGGGGCGGGCTGCCAA
GGAGCGGGTTTCTGGAGAGCTCACGCTGGAGAAGGCCGTTGGTACGGGTG
CTGTACACAGTCGAAACCATGCGCGCACTCCAATCTCAAGCGTCGACCCG
GCGGTTCTAGTTGTTGCAATTCACTACTGTGTCTTTGATGTGTAGCTCCT
TTCGTTGTCGTTTCATGTTGCCGTGGAGACACCTCTATCGAACCAAGCAC
TATATCTGGAGACGCGTTTATCGAACCAAGCACTATATCTGACGCGCCAC
GTGTTTTGGTGCCGGTGCTTCATTGTCGTCGTGTCAAATCGCTCTATAAT
AGGCTTGAAACGCAAGGTAAATTCCCAACGGGAAAAACGGGGAGGGGTGC
CTGCCAAGGGAAATCCTGGAGACAAGCTCTTTCACCACGTCGACTATTCG
CCAGGATTTCATCAACGCGGAGAACTCATCGTGGGTAGTTCTTTCTACAG
GTGAGCTCCTCTCCTTCTTTAGGTAGGCTCCGTGTAGGCAACATAGCTTC
ATTTTTCCTCTACCGGCGGCTTGGTCCAGACAAGAATCAAATGCTTAACC
CTGCCCGGATGATAGCCATGGTTTGCACGCGGTTTTAGCCTCACACCTTG
TGCTGGCGTCCTGATGGCCATCGTGAGGCAAGCAGGTAGCTGTGATTATC
ACAGCGTAGATGCCTTCTGCACGAGACACATGTTCGATGTGTGTGATTGT
CTTAACACGGTGTTTGGTTGTCGTTCTTATCCCCAACCGTGCGGCGCCCC
TGCGATATTTTAACGCGGGTGTAACTCAGAACGATGCCTCGACGTGGTGG
CGGGCACAGGGCTCCAGGATCAGTCACCGTCCCCGCTGCCGTTCCTGAAG
GAGTGGGGTATGCCCTCGGGTACCGGAAGCCGAAGATGGCGTTTCACGAA
ACACGGCAGGCGTCCCAGTACTTGGAAGATCTTAGGGGAGTACTCGAGCT
AACGGTGAGCATCAACACGACTCCAAATTATTGCCGGAATTCTTATATTT
AGAGCATCATTTGCTGCTGCGATGCGGGTAGGGCACCAGGCGATGTGACA
TTCGATCGTGGTACTCCACCCAAGATCTACCATTTTCCCCATAGTGCATA
GGTCAGAGAACCTGCTTGATACTCAATGTAACATCCCCGTTTCTCAACCT
TGAGCTGTGATCACATGTATGCGTCGGGGTTTTTGAGGGAAGGAATTCAG
ATAAGAAGGGTCATTCTTACTGTGGCTGCTTTGGGTATTGCAAGCGCCGA
AACCCTCGCTCCATCTAACTATCATAGCGTGAACGGCATCTTAGTTTCCG
CACGGGACCAACGACAACCATCGCCAAACTCCACAGGAAGCGGCGCCTGT
GCCCGCGGCGGCCGGCCAGGAAGTAGGACCGAGCTGGGAGGAGAAAACTG
GCATGCATACCTGGCCGATAAATGAAAAAAGTTCGCCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig675:13889..16126+

>mRNA_P-littoralis_Contig675.6.1 ID=mRNA_P-littoralis_Contig675.6.1|Name=mRNA_P-littoralis_Contig675.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=714bp|location=Sequence derived from alignment at P-littoralis_Contig675:13889..16126+ (Pylaiella littoralis U1_48)
ATGGCGGGTTCCGACAGCGAGACATTCCGGCCTTGTCGCAGGGTGCTCAC
GCCGGGCTTTTCCGGAGCGAAGCACGCGCGCTTGCAACGGCTGGCGAGGA
TCGAACCCTCGCCGCGCGTGACTCCTAGGCCGACAGGCCTGCGCACTAAC
GCAGCGGCATCCCGCCGATCAGGGTATGACATCCCCGATCCCGGTCTCGT
GCTGCAATCAAAGCACGTGACAGTGGATGACACGGGGCGGGCTGCCAAGG
AGCGGGTTTCTGGAGAGCTCACGCTGGAGAAGGCCGTTGGCTTGAAACGC
AAGGTAAATTCCCAACGGGAAAAACGGGGAGGGGTGCCTGCCAAGGGAAA
TCCTGGAGACAAGCTCTTTCACCACGTCGACTATTCGCCAGGATTTCATC
AACGCGGAGAACTCATCGTGGGTAGTTCTTTCTACAGAACGATGCCTCGA
CGTGGTGGCGGGCACAGGGCTCCAGGATCAGTCACCGTCCCCGCTGCCGT
TCCTGAAGGAGTGGGGTATGCCCTCGGGTACCGGAAGCCGAAGATGGCGT
TTCACGAAACACGGCAGGCGTCCCAGTACTTGGAAGATCTTAGGGGAGTA
CTCGAGCTAACGGAAGCGGCGCCTGTGCCCGCGGCGGCCGGCCAGGAAGT
AGGACCGAGCTGGGAGGAGAAAACTGGCATGCATACCTGGCCGATAAATG
AAAAAAGTTCGCCG
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