mRNA_P-littoralis_Contig673.54.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig673.54.1
Unique NamemRNA_P-littoralis_Contig673.54.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig673.54.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig673contigP-littoralis_Contig673:159251..160257 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size391
Hectar predicted targeting categoryother localisation
Exons3
Cds size390
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791403.608997-CDS-P-littoralis_Contig673:159250..1593301680791403.608997-CDS-P-littoralis_Contig673:159250..159330Pylaiella littoralis U1_48CDSP-littoralis_Contig673 159251..159330 +
1680791403.621341-CDS-P-littoralis_Contig673:159663..1598441680791403.621341-CDS-P-littoralis_Contig673:159663..159844Pylaiella littoralis U1_48CDSP-littoralis_Contig673 159664..159844 +
1680791403.635384-CDS-P-littoralis_Contig673:160128..1602571680791403.635384-CDS-P-littoralis_Contig673:160128..160257Pylaiella littoralis U1_48CDSP-littoralis_Contig673 160129..160257 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig673.54.1prot_P-littoralis_Contig673.54.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig673 159251..160257 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig673.54.1

>prot_P-littoralis_Contig673.54.1 ID=prot_P-littoralis_Contig673.54.1|Name=mRNA_P-littoralis_Contig673.54.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=130bp
MNVLKGVQFETAKTAFPAALVSFAINRWTVRGDTVMSNVGDTDRVLELGL
SLSRKVEIFPDDLDNIPSIKERALSKFNDAWNEGLFSRSLSGEDGLTQIK
EGQRPASVPANTTPVRVRGMYEEELKAAMD
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mRNA from alignment at P-littoralis_Contig673:159251..160257+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig673.54.1 ID=mRNA_P-littoralis_Contig673.54.1|Name=mRNA_P-littoralis_Contig673.54.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1007bp|location=Sequence derived from alignment at P-littoralis_Contig673:159251..160257+ (Pylaiella littoralis U1_48)
ATGAACGTGTTGAAGGGCGTTCAATTTGAGACTGCGAAGACGGCATTCCC
GGCGGCACTTGTCTCGTTCGCAATTAACAGGTGTGTACGCACGGCTGGAG
AATTCAAGAAGGGTGTACTATGTTGATCCACGGATGAAAAGTGATATCCC
TAACCCTGCGGGCTGCAAACCTGTAGAAATTTTTGGCGGTAGGTATTTCG
TTCATGGGCGTGTTTGGTTTGCCCATCTGTTCTAAACAGCAGCTGAAAAA
CTCCCGTGATTTTTGCGCGCATCTGATCAGCCGAATCCTCACATCCCTAA
AGTCGACCAGGGTTTGTTTTCTTCTCTATCTTTCGTACGTGTCAGTTGTT
TGAGCTTCCACCCATTGCCTGGCCGGCGAAATTCTCGCTTTTTGGGGCCG
TTGGTCCATGCAGGTGGACTGTACGAGGTGACACAGTCATGTCAAACGTG
GGAGACACCGACCGCGTTCTGGAGTTGGGCCTGTCTCTCAGCAGGAAGGT
CGAGATCTTCCCCGATGACCTCGACAACATCCCGTCGATTAAGGAACGGG
CTCTTTCGAAATTCAACGATGCATGGAATGAAGGCCTTTTCTCGGTAAGG
GATGTATATGGTTCGTGCGTTCTGTCGCTTAACGCTGGCCGGTGACCGGC
GCGCGAAAGGGGTGATATCGACGAGTGACGCACACACACAACCGCTGCAG
CCAAAACCCTGAAATATTGACAGCAATGACGAAGTAATTCTGGTGTTTTG
TTGAACACAGTGATCTTAACCACCGTCAACAACCTATCCATGTGACATAA
TCCTCGTCTGAAACTGTTCTTCTCAACCACCTCCGTATCCACGCATCCAT
GTGACACCAATCCTGGTTTTTTCCACAGCGCTCGCTTTCCGGTGAGGATG
GACTAACACAGATAAAGGAAGGACAGCGGCCAGCCTCTGTCCCGGCGAAT
ACGACGCCTGTACGGGTTAGGGGCATGTACGAGGAGGAACTCAAGGCGGC
GATGGAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig673:159251..160257+

>mRNA_P-littoralis_Contig673.54.1 ID=mRNA_P-littoralis_Contig673.54.1|Name=mRNA_P-littoralis_Contig673.54.1|organism=Pylaiella littoralis U1_48|type=CDS|length=390bp|location=Sequence derived from alignment at P-littoralis_Contig673:159251..160257+ (Pylaiella littoralis U1_48)
ATGAACGTGTTGAAGGGCGTTCAATTTGAGACTGCGAAGACGGCATTCCC
GGCGGCACTTGTCTCGTTCGCAATTAACAGGTGGACTGTACGAGGTGACA
CAGTCATGTCAAACGTGGGAGACACCGACCGCGTTCTGGAGTTGGGCCTG
TCTCTCAGCAGGAAGGTCGAGATCTTCCCCGATGACCTCGACAACATCCC
GTCGATTAAGGAACGGGCTCTTTCGAAATTCAACGATGCATGGAATGAAG
GCCTTTTCTCGCGCTCGCTTTCCGGTGAGGATGGACTAACACAGATAAAG
GAAGGACAGCGGCCAGCCTCTGTCCCGGCGAATACGACGCCTGTACGGGT
TAGGGGCATGTACGAGGAGGAACTCAAGGCGGCGATGGAT
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