mRNA_P-littoralis_Contig673.52.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig673.52.1
Unique NamemRNA_P-littoralis_Contig673.52.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig673.52.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig673contigP-littoralis_Contig673:158151..159057 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size481
Hectar predicted targeting categoryother localisation
Exons3
Cds size477
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791403.550899-CDS-P-littoralis_Contig673:158150..1582931680791403.550899-CDS-P-littoralis_Contig673:158150..158293Pylaiella littoralis U1_48CDSP-littoralis_Contig673 158151..158293 +
1680791403.561159-CDS-P-littoralis_Contig673:158505..1587771680791403.561159-CDS-P-littoralis_Contig673:158505..158777Pylaiella littoralis U1_48CDSP-littoralis_Contig673 158506..158777 +
1680791403.5715249-CDS-P-littoralis_Contig673:158993..1590551680791403.5715249-CDS-P-littoralis_Contig673:158993..159055Pylaiella littoralis U1_48CDSP-littoralis_Contig673 158994..159055 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig673.52.1prot_P-littoralis_Contig673.52.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig673 158151..159055 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig673.52.1

>prot_P-littoralis_Contig673.52.1 ID=prot_P-littoralis_Contig673.52.1|Name=mRNA_P-littoralis_Contig673.52.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=159bp
SDEEREKRRGAGAGASTDGSSTKSKKKRRQKAATMPADAELEIKEARMKE
IVHVHSNLFTSDKVADSDLGTSVKLNHPAKLMLLHLGADKSLLLHSPASS
TRLKHILTACRTSGCLHPEGTIVLFVPPPTQSHASRFSEACAVPGVGLEV
EESFLHVEY
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mRNA from alignment at P-littoralis_Contig673:158151..159057+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig673.52.1 ID=mRNA_P-littoralis_Contig673.52.1|Name=mRNA_P-littoralis_Contig673.52.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=907bp|location=Sequence derived from alignment at P-littoralis_Contig673:158151..159057+ (Pylaiella littoralis U1_48)
AGTGATGAGGAGAGGGAGAAGCGCCGCGGTGCGGGCGCGGGTGCCAGCAC
CGACGGTAGCAGCACCAAGTCCAAGAAGAAGCGAAGGCAAAAGGCGGCGA
CCATGCCCGCGGACGCGGAGTTGGAGATAAAGGAGGCACGCATGTGAGAC
TCTTCATCGAAGTATCATGTAAGGCTGCACATTGTTTTCCTTGTGCCAAA
CTTAGGTAGTTGCAGTTCACTGCTAGTTGCTCTACTCTTCAAGCCATGTG
ATAACATAGTGAAGTGGCTTGACTTGAACCATGCCGTCATAAGCGTTTTT
CGTAATCCAGCCCGCTCCGTCCTCGGCCCCATGCTGCTCCTCCTCCTCCA
CGCAGGAAGGAGATCGTGCACGTCCACAGCAATTTGTTTACCTCGGACAA
AGTCGCAGACTCGGACTTGGGGACAAGTGTCAAGCTCAACCACCCCGCCA
AGTTGATGCTACTCCACCTCGGCGCCGACAAGTCGCTCCTCCTACACTCG
CCCGCTAGCAGCACCCGCCTGAAACATATTTTGACTGCGTGCCGTACTTC
TGGGTGCCTGCACCCGGAAGGTACTATCGTGCTCTTCGTACCGCCCCCCA
CCCAAAGCCACGCGTCGCGTTTCAGCGGTGAGTTGAATCATTTGGCAGCC
TCGCCGACTGTCCTGCTGTACCCGTGTGGAACTCGCGTCGTGGTTGAATC
CTCTCGCTACAACATACAGCAATGGCCTTGTTTGTGTTGCTCGTATACAT
GTTGTGACACGCGTAGCAATCATATCCGTTCGGCGTACCCAACCAACGCA
TCCAAAACCTCGTATTTCATTTTTGTTGCACTATGCCCCACAGAAGCGTG
CGCCGTGCCTGGCGTGGGCCTCGAGGTGGAGGAGAGTTTCCTGCATGTCG
AGTACAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig673:158151..159057+

>mRNA_P-littoralis_Contig673.52.1 ID=mRNA_P-littoralis_Contig673.52.1|Name=mRNA_P-littoralis_Contig673.52.1|organism=Pylaiella littoralis U1_48|type=CDS|length=477bp|location=Sequence derived from alignment at P-littoralis_Contig673:158151..159057+ (Pylaiella littoralis U1_48)
AGTGATGAGGAGAGGGAGAAGCGCCGCGGTGCGGGCGCGGGTGCCAGCAC
CGACGGTAGCAGCACCAAGTCCAAGAAGAAGCGAAGGCAAAAGGCGGCGA
CCATGCCCGCGGACGCGGAGTTGGAGATAAAGGAGGCACGCATGAAGGAG
ATCGTGCACGTCCACAGCAATTTGTTTACCTCGGACAAAGTCGCAGACTC
GGACTTGGGGACAAGTGTCAAGCTCAACCACCCCGCCAAGTTGATGCTAC
TCCACCTCGGCGCCGACAAGTCGCTCCTCCTACACTCGCCCGCTAGCAGC
ACCCGCCTGAAACATATTTTGACTGCGTGCCGTACTTCTGGGTGCCTGCA
CCCGGAAGGTACTATCGTGCTCTTCGTACCGCCCCCCACCCAAAGCCACG
CGTCGCGTTTCAGCGAAGCGTGCGCCGTGCCTGGCGTGGGCCTCGAGGTG
GAGGAGAGTTTCCTGCATGTCGAGTAC
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