mRNA_P-littoralis_Contig673.51.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig673.51.1 vs. uniprot
Match: A0A6H5KN26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN26_9PHAE) HSP 1 Score: 145 bits (366), Expect = 4.940e-33 Identity = 83/198 (41.92%), Postives = 126/198 (63.64%), Query Frame = 1
Query: 451 LQHTSVARQLNPKNVANIRRSIDAHGFMENSNLSVIFTGYTGDKDSLTPDEADKL-VAVLLDGNHRVAAAREVLGSDTRVPCICYKDIADANIKRVVVDACNDTASIFAPRTIFDSVFYYAALTK--TIAEDPNRRSTKAVTAREMREPYKQAGISPPSESTCNHWRKVIDVMTPAGLKALKEVSESADPSVDLSILT 1035
L +TS ARQ++ K+V +++SI + FMEN LSVIF G + T ++ADK A +LDGNHR+ A + V D VPC CY DI DAN+KR+V DACND S FA RTI+D ++++++L K + + +R ++ V ++++E Y +A + PS+ST W K + + L ALK++ ES D S+DL+++T
Sbjct: 9 LINTSHARQISQKSVKLLQQSIQSQDFMENQPLSVIFKGVH--QAPFTQEDADKAGPASVLDGNHRLVALKAVKPGDFLVPCQCYSDIKDANVKRIVADACNDATSTFAERTIYDRLYFFSSLYKGAQASLETSRSRSRQVNPKDIKEFYAKAKQAVPSDSTLRSWLKAVRGIKEEALTALKDLVESEDKSIDLNLVT 204
BLAST of mRNA_P-littoralis_Contig673.51.1 vs. uniprot
Match: D7G124_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G124_ECTSI) HSP 1 Score: 121 bits (304), Expect = 3.710e-26 Identity = 83/256 (32.42%), Postives = 135/256 (52.73%), Query Frame = 1
Query: 295 RSGRVITRGGGRGDVGRASDAGGSGTPPIATDNVT------GILKKHQLGRFDLKIGSLQHTSVARQLNPKNVANIRRSIDAHGFMENSNLSVIFTGYTGDKDSL-TPDEADKLVAVLLDGNHRVAAAREVLGSDTRVPCICYKDIADANIKRVVVDACNDTASIFAPRTIFDSVFYYAALTK--TIAEDPNRRSTKAVTAREMREPYKQAGISPPSESTCNHWRKVIDVMTPAGLKALKEVSESADPSVDLSILT 1035
RS V RGG R + GGSG ++ ++ G+LK+ LG + + L +TS ARQ++ ++V +++SI + FME+ + G + T L A + V+ D VPC CY DI DAN+KR+V DACND S FA RTI+D ++++++L K + + +R ++ V ++++E Y +A + PS+ST W K + + L AL+++ ES D SVDL+++T
Sbjct: 24 RSAAVAARGGER-QASYQQETGGSGRRASSSVHLHDGAGAGGMLKERSLGMHYILLERLINTSHARQISQRSVKLLQQSIQSQDFMEHGEPAAFCDIQRGSSSAFHTRGCRQSRARQRLGREPSFVAPKAVMPGDFLVPCQCYSDIKDANVKRIVADACNDATSTFAERTIYDRLYFFSSLYKGAQASLETSRSRSRQVNPKDIKELYAKAKQAVPSDSTLRSWLKAVRGIKEEALTALEDLVESEDKSVDLNLVT 278
BLAST of mRNA_P-littoralis_Contig673.51.1 vs. uniprot
Match: A0A6H5K2Z9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2Z9_9PHAE) HSP 1 Score: 116 bits (290), Expect = 8.570e-24 Identity = 76/248 (30.65%), Postives = 130/248 (52.42%), Query Frame = 1
Query: 301 GRVITRGGGRGDVGRASDAGGSGTPPIATDNVTGILKKHQLGRFDLKIGSLQHTSVARQLNPKNVANIRRSIDAHGFMENSNLSVIFTGYTGDKDSLTPDEADKLVAVLLDGNHRVAAAREVLGSDTRVPCICYKDIADANIKRVVVDACNDTASIFAPRTIFDSVFYY-AALTKTIAEDP----------NRRSTKAVTAREMREPYKQAGISPPSESTCNHWRKVIDVMTPAGLKALKEVSESADP 1011
GR GGRG S A G P + N+ +L H + +D+ + ++ +RQ +P V + SI +HG+++ S V+F+ T ++ +T + A L AV++DGNHR+AA +EV G D + C CY+ IAD +++ D CN T + F RTI+D +++Y +T +A++ N RS +VTA ++ +K AG P+ +T W +++ + L AL+ +++ P
Sbjct: 7 GRGRRAAGGRGGA-STSSADDHGDDPASATNIGEVLASHCVKEWDVPLKNITLAENSRQTSPTAVQEVVESIQSHGWVD-SFPRVMFSDLTEGQE-MTVELAATLRAVVIDGNHRLAACKEVYGEDRLIRCTCYRFIADGFARQIASDVCNVTTATFQARTIYDQLYFYNRMMTSLMAQESESSSARRRPSNSRSKPSVTAAKLATCWKGAGSQAPAANTLRQWISIVNDTSQGALVALRALTDQRVP 251
BLAST of mRNA_P-littoralis_Contig673.51.1 vs. uniprot
Match: A0A6H5KJN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN8_9PHAE) HSP 1 Score: 110 bits (274), Expect = 8.610e-22 Identity = 68/230 (29.57%), Postives = 122/230 (53.04%), Query Frame = 1
Query: 355 AGGSGTPPIATDNVTGILKKHQLGRFDLKIGSLQHTSVARQLNPKNVANIRRSIDAHGFMENSNLSVIFTGYTGDKDSLTPDEADKLVAVLLDGNHRVAAAREVLGSDTRVPCICYKDIADANIKRVVVDACNDTASIFAPRTIFDSVFYY-AALTKTIAEDPNR----------RSTKAVTAREMREPYKQAGISPPSESTCNHWRKVIDVMTPAGLKALKEVSESADP 1011
AG P + N+ +L H + +D+ + ++ +RQ +P V + SI +HG+++ S V+F+ T ++ +T + A L AV++DGNHR+AA +EV G D + C CY+ IAD+ +++ D CN T + F RTI+D +++Y +T +A++ RS +VTA ++ +K AG P+ +T W +++ L AL+ +++ P
Sbjct: 24 AGDHSDDPTSATNIGEVLASHCVKEWDVPLKNITLAENSRQTSPTAVQEVVESIQSHGWVD-SFPRVMFSDLTEGQE-MTVELAATLHAVVIDGNHRLAACKEVYGEDRLIRCTCYRFIADSFARQIASDVCNVTTATFRARTIYDQLYFYNRMMTSLMAQESESXXXXXXXXXSRSKSSVTAAKLAACWKGAGSQAPAANTLRQWISIVNDTGQEALVALRALTDQRVP 251
BLAST of mRNA_P-littoralis_Contig673.51.1 vs. uniprot
Match: A0A6H5JK41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK41_9PHAE) HSP 1 Score: 99.0 bits (245), Expect = 6.380e-18 Identity = 65/210 (30.95%), Postives = 112/210 (53.33%), Query Frame = 1
Query: 391 NVTGILKKHQLGRFDLKIGSLQHTSVARQLNPKNVANIRRSIDAHGFMENSNLSVIFTGYTGDKDSLTPDEADKLVAVLLDGNHRVAAAREVLGSDTR--VPCICYKDIADANIKRVVVDACNDTASIFAPRTIFDSVFYYAALTKTIAEDPNR-----RSTKAVTAREMREPY-KQAGISPPSESTCNHWRKVIDVMTPA--GLKALKE 990
+V +LK +LG +++ + +++ T RQ +P V I SI G+M + V + +T + A + A +LDGNHR+ AA+EV G D + + C CY+DI K++V DACN + A RT +D VF++ + + + ++ NR + K VTA++++ + K G++P +++ NH + T A LKA+ E
Sbjct: 43 HVASVLKDLELGVWEIPLANIRFTEHCRQRSPAAVTAIVASITEMGWMPTAVPQVTLPEVQKGQ-VMTAELAATMTAYVLDGNHRLLAAKEVYGGDLKKTIKCACYRDITCPYTKKIVSDACNQCSETHAKRTTYDQVFFFGTMIQDVLDEQNRSRPRHKMKKTVTAKDLKACWAKVPGVTPSTQTLRNHLLISANFSTQAMASLKAMTE 251
BLAST of mRNA_P-littoralis_Contig673.51.1 vs. uniprot
Match: A0A6H5K280_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K280_9PHAE) HSP 1 Score: 64.3 bits (155), Expect = 2.660e-7 Identity = 38/117 (32.48%), Postives = 64/117 (54.70%), Query Frame = 1
Query: 349 SDAGGSGTPPIATDNVTGILKKHQLGRFDLKIGSLQHTSVARQLNPKNVANIRRSIDAHGFMENSNLSVIFTGYTGDKDSLTPDEADKLVAVLLDGNHRVAAAREVLGSDTRVPCIC 699
S AG G P + N+ +L H + +D + ++ +RQ +P V + SI +HG+++ S V+F+ T ++ +T + L AV++DGNHR+AA +EV G D + C C
Sbjct: 317 SSAGDHGDGPTSATNIGEVLASHCVKEWDAPLNNITLAENSRQTSPTAVQEVVESIQSHGWVD-SFPRVMFSDLTEGQE-MTVELPATLHAVVIDGNHRLAACKEVYGEDRLIRCTC 431 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig673.51.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig673.51.1 >prot_P-littoralis_Contig673.51.1 ID=prot_P-littoralis_Contig673.51.1|Name=mRNA_P-littoralis_Contig673.51.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=262bp MEQGGRSGRVITRGGGRGDVGRASDAGGSGTPPIATDNVTGILKKHQLGRback to top mRNA from alignment at P-littoralis_Contig673:154289..158027+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig673.51.1 ID=mRNA_P-littoralis_Contig673.51.1|Name=mRNA_P-littoralis_Contig673.51.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3739bp|location=Sequence derived from alignment at P-littoralis_Contig673:154289..158027+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig673:154289..158027+ >mRNA_P-littoralis_Contig673.51.1 ID=mRNA_P-littoralis_Contig673.51.1|Name=mRNA_P-littoralis_Contig673.51.1|organism=Pylaiella littoralis U1_48|type=CDS|length=786bp|location=Sequence derived from alignment at P-littoralis_Contig673:154289..158027+ (Pylaiella littoralis U1_48)back to top |