mRNA_P-littoralis_Contig673.34.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig673.34.1
Unique NamemRNA_P-littoralis_Contig673.34.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig673.34.1 vs. uniprot
Match: B5LWN9_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWN9_9PHYC)

HSP 1 Score: 111 bits (277), Expect = 2.350e-22
Identity = 95/285 (33.33%), Postives = 135/285 (47.37%), Query Frame = 1 
Query:    1 VNSLIWKFLFKVSAEHTIRVVPKSFTPDLIKFVEGEGSFLEILSMKKFT--KYTFGPDVP-GFGIFGQEITFNFSGNGLAIVTQVSKALQKARRLGRFTNMQAAIFPLTPGPEFESLYENVKKGKETLL--ELKGGKNNKPQRFSGDIS--------EKTRATQALLCLADSRWIPRLPLAAIGPITRPR--GKLGPGGVDGVYQQMARFPEILEVILENVVNGDMNLFGKVKEHFNPITRETRRAVKVHNNEDGQFGRSLSLSLGRSRKERRGRMLRDMAEAQR 810
            VN LIW  +  + A  T+  +      D + FV+ EGS L ++ M ++   ++ FG DV    GI G++      GN  A+V+ VS  LQ + RLGRFT +Q+A FP+ P              KE LL   +  GK   P      IS        E + A + +  L   + IP LPL  IG +TRP   G+L     D  + +M RFP++L+  L     GD      V +HF+P+  E+RR   V  N           S+G +RK +RGRML D+ E  R
Sbjct:   26 VNPLIWAVVRSIPAAMTVGDLTFLGEEDRL-FVQQEGSQLSMMGMSRYAGEEFAFGDDVMVDMGILGKKKMVAVDGNAHAMVSTVSTCLQASYRLGRFTTLQSAFFPVVP--------------KEFLLLKSVDWGKKVNPFDEMPTISLWRNACTGELSFAARVVAGLDGGKSIPSLPLMVIGQMTRPDDLGELRASSKDMFFNKMGRFPDLLKSSLSG---GDGEFIAYVYKHFHPVQIESRRRATVERNRQN--------SVGVNRKVKRGRMLEDVEETAR 284
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BLAST of mRNA_P-littoralis_Contig673.34.1 vs. uniprot
Match: D8LH64_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH64_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 9.930e-8
Identity = 54/180 (30.00%), Postives = 91/180 (50.56%), Query Frame = 3 
Query:  798 GSSACCKEMVAT---VMTNVVDPFMKKVLEQE--VDLCWGMLVEDGKDAGEKTNDDHRDPPAVREAAR----RLVEMEKITCKEISLLTKATFLNDCITSAAIRKQC--------RWRIKAHDTYVDENTGRLMDILPETGKNAETLMDEDLGLIMTHKKSIIIEKAYAVQVVLGRAVLR 1286
            GS  C +  +     V  N +D FM+K+ +++  V +C  +L  + +   ++ N+DH  PP  ++        LVE  K+T  +ISLL+ +  + D + +AA+RKQ          +R+K  D Y ++       +LP   KN + L +   G+++ H K    E AYAV  V+GR V+R
Sbjct: 1025 GSDECLQGFLLLEELVSRNGIDSFMEKLPDKDDIVKMCNEVLEMNPR---KRENEDHLCPPEFKQRIEAIVDELVEGNKVTRSDISLLSCSLTVLDSLLTAALRKQDILGQLAKDLYRMKCKDVYGND-VAITRCLLPRYFKNKKALENSTCGVVVNHTKHEKCEGAYAVMAVIGRKVMR 1200
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig673.34.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
B5LWN9_9PHYC2.350e-2233.33Uncharacterized protein n=1 Tax=Feldmannia species... [more]
D8LH64_ECTSI9.930e-830.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig673contigP-littoralis_Contig673:86379..87965 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1469
Hectar predicted targeting categoryother localisation
Exons2
Cds size705
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791402.8052442-UTR-P-littoralis_Contig673:86378..870101680791402.8052442-UTR-P-littoralis_Contig673:86378..87010Pylaiella littoralis U1_48UTRP-littoralis_Contig673 86379..87010 -
1680791402.842705-UTR-P-littoralis_Contig673:87833..879651680791402.842705-UTR-P-littoralis_Contig673:87833..87965Pylaiella littoralis U1_48UTRP-littoralis_Contig673 87834..87965 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791402.8166344-CDS-P-littoralis_Contig673:87010..872471680791402.8166344-CDS-P-littoralis_Contig673:87010..87247Pylaiella littoralis U1_48CDSP-littoralis_Contig673 87011..87247 -
1680791402.8284564-CDS-P-littoralis_Contig673:87365..878331680791402.8284564-CDS-P-littoralis_Contig673:87365..87833Pylaiella littoralis U1_48CDSP-littoralis_Contig673 87366..87833 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig673.34.1prot_P-littoralis_Contig673.34.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig673 87011..87833 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig673.34.1

>prot_P-littoralis_Contig673.34.1 ID=prot_P-littoralis_Contig673.34.1|Name=mRNA_P-littoralis_Contig673.34.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=235bp
MKKFTKYTFGPDVPGFGIFGQEITFNFSGNGLAIVTQVSKALQKARRLGR
FTNMQAAIFPLTPGPEFESLYENVKKGKETLLELKGGKNNKPQRFSGDIS
EKTRATQALLCLADSRWIPRLPLAAIGPITRPRGKLGPGGVDGVYQQMAR
FPEILEVILENVVNGDMNLFGKVKEHFNPITRETRRAVKVHNNEDGQFGR
SLSLSLGRSRKERRGRMLRDMAEAQRAARRWWRR*
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mRNA from alignment at P-littoralis_Contig673:86379..87965-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig673.34.1 ID=mRNA_P-littoralis_Contig673.34.1|Name=mRNA_P-littoralis_Contig673.34.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1587bp|location=Sequence derived from alignment at P-littoralis_Contig673:86379..87965- (Pylaiella littoralis U1_48)
GTCAACTCCCTGATCTGGAAGTTTTTGTTCAAGGTTTCCGCTGAACACAC
GATCCGCGTGGTGCCTAAATCGTTTACGCCGGATCTCATAAAGTTTGTGG
AGGGGGAAGGTTCGTTTCTGGAGATATTGAGCATGAAGAAGTTTACAAAA
TACACGTTTGGACCGGACGTTCCCGGCTTTGGCATCTTCGGGCAGGAGAT
CACCTTCAACTTCTCCGGGAACGGGTTGGCCATTGTCACTCAGGTGTCCA
AAGCCTTACAAAAAGCCAGGCGCCTGGGGAGGTTCACCAACATGCAGGCG
GCTATTTTCCCTCTAACTCCAGGGCCCGAGTTCGAGTCCCTGTACGAGAA
CGTGAAGAAAGGCAAGGAGACGCTGCTGGAGCTGAAGGGCGGCAAGAACA
ACAAGCCCCAACGATTCAGCGGCGACATATCGGAGAAGACAAGGGCCACG
CAAGCTCTTCTGTGCCTGGCAGATTCCCGCTGGATCCCGCGCCTTCCTCT
TGCTGCAATTGGGCCCATTACCCGCCCTCGCGGCAAACTGGGTCCCGGAG
GCGTCGACGGCGTCTACCAGCAGATGGCACGGTTCCCCGAGATACTCGAG
GTAATGTTCTTGTTGTGAGCATGGAAGTTGGTGAATCGCAGAAGGATTAC
AAGTAGGTACCTCCTTTTGGCTTGTAGTCCTCTAATCCACGACATCAACC
AACCTCTAAACCAAACAGGTGATACTGGAAAATGTCGTCAACGGAGACAT
GAATCTGTTCGGGAAGGTGAAGGAACACTTCAACCCGATAACTAGGGAGA
CGAGGAGAGCCGTCAAAGTGCACAACAACGAAGACGGTCAATTCGGACGC
TCTCTCTCTCTCTCTCTCGGACGCTCTCGGAAGGAGCGGCGGGGAAGGAT
GCTCCGTGATATGGCGGAAGCTCAGCGTGCTGCAAGGAGATGGTGGCGAC
GGTGATGACGAACGTGGTGGATCCCTTCATGAAGAAGGTACTCGAACAAG
AGGTCGACCTGTGCTGGGGGATGTTGGTGGAGGACGGCAAGGACGCGGGA
GAAAAGACGAACGACGACCACCGCGACCCTCCGGCAGTCAGGGAAGCAGC
TCGGAGACTCGTGGAGATGGAGAAAATAACCTGCAAGGAGATCAGTTTGT
TGACCAAGGCCACGTTCTTGAACGACTGCATCACGTCGGCAGCCATCAGG
AAGCAGTGCAGGTGGAGAATCAAGGCACACGACACCTACGTCGACGAGAA
CACCGGCAGGCTAATGGATATCCTCCCCGAAACGGGAAAGAACGCTGAGA
CTTTGATGGACGAGGATCTCGGTCTGATCATGACGCACAAGAAGAGCATA
ATTATCGAGAAAGCTTACGCCGTTCAGGTCGTCCTAGGCCGCGCCGTGCT
CCGACACCACAAGTACATCCTCGACCCCGTCGTTGGTCCCCTCGATCCCG
AAGGCCACAAGCTCAGCAAACATGCCCGCCACAATCTATTGAAGAAGGCA
GGAAAGAAGGTGTTTGGCGTCCCGAGGTTTGGCGAGCACACACTGCGGAC
GTACCACATCACCATGATGGTAATGCGAGCCATTCGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig673:86379..87965-

>mRNA_P-littoralis_Contig673.34.1 ID=mRNA_P-littoralis_Contig673.34.1|Name=mRNA_P-littoralis_Contig673.34.1|organism=Pylaiella littoralis U1_48|type=CDS|length=705bp|location=Sequence derived from alignment at P-littoralis_Contig673:86379..87965- (Pylaiella littoralis U1_48)
ATGAAGAAGTTTACAAAATACACGTTTGGACCGGACGTTCCCGGCTTTGG
CATCTTCGGGCAGGAGATCACCTTCAACTTCTCCGGGAACGGGTTGGCCA
TTGTCACTCAGGTGTCCAAAGCCTTACAAAAAGCCAGGCGCCTGGGGAGG
TTCACCAACATGCAGGCGGCTATTTTCCCTCTAACTCCAGGGCCCGAGTT
CGAGTCCCTGTACGAGAACGTGAAGAAAGGCAAGGAGACGCTGCTGGAGC
TGAAGGGCGGCAAGAACAACAAGCCCCAACGATTCAGCGGCGACATATCG
GAGAAGACAAGGGCCACGCAAGCTCTTCTGTGCCTGGCAGATTCCCGCTG
GATCCCGCGCCTTCCTCTTGCTGCAATTGGGCCCATTACCCGCCCTCGCG
GCAAACTGGGTCCCGGAGGCGTCGACGGCGTCTACCAGCAGATGGCACGG
TTCCCCGAGATACTCGAGGTGATACTGGAAAATGTCGTCAACGGAGACAT
GAATCTGTTCGGGAAGGTGAAGGAACACTTCAACCCGATAACTAGGGAGA
CGAGGAGAGCCGTCAAAGTGCACAACAACGAAGACGGTCAATTCGGACGC
TCTCTCTCTCTCTCTCTCGGACGCTCTCGGAAGGAGCGGCGGGGAAGGAT
GCTCCGTGATATGGCGGAAGCTCAGCGTGCTGCAAGGAGATGGTGGCGAC
GGTGA
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