mRNA_P-littoralis_Contig673.30.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig673.30.1 vs. uniprot
Match: Q8QNC2_ESV1K (EsV-1-160 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNC2_ESV1K) HSP 1 Score: 202 bits (513), Expect = 1.090e-50 Identity = 179/513 (34.89%), Postives = 253/513 (49.32%), Query Frame = 1
Query: 1 TVTWTQDANSNYEVSSAEHLKQIMHKGTLYTDAGSMPTDYWSAGTNYTQTADIDLLNDSTNIEPIGIS-----ADPFMGDYDGGEFSISNWS-------YIDPEFSTLNECGSDIGLFGHCTSNALKKSGSMVYGHYRGLAQRLVSWLETYWKSIIRCNTGCGTSSVTSRTDLSSTQTS*PGLTYLGGVIGTARCPYANVITLRGSVDFLAATHSSYNSGGIFGTLRNEQTTSMIPNLATSPSGINGTNVGGIAGQLTLEKGGLTGWVNAMIGNISGLIWSGGLIGRCFAYSGTDPMATLVNSMTGNITIGVTPNASLDTGVGGIMGYLYSAAVNTHFMNYMSGDRISLESTAFVGGILGQG-----GSASGEITSSMNAMNDNVENAIVGNDAGNISFSTTTRNTAFGLTY---NVDTTTPVDPTDVLYPTD--FMDLPYVVISATSPDAIDYDFDFIFANLAGSGNSSYNIYTHCVLHKGDIAGPLRVDFDVLESNTTLYTTFINYPNETV 1473
TVTWT+ + YEVSS +HL QIMHKG LYTD G P +YWS +Y QT DIDL++D NI PIG+S +D F G+YDGG +ISNWS Y F+T++ + L G T + K + G+ T +I+ T ++ + S T G + G AR V TLRGS+ S+ +GG+ G T MI NLA P+GI+G +VGGIAG + LT VNAMIG++ G GG+IG M+ ++ +G Y S++ T +MNYMSG+ S+ T GGI+G + +++S+ AMN +V++A+VG D + +T+FG+TY + + TP++ Y TD F LPY+ +S T D Y++DFIFANLAG N+SY YTH LH GD+ P D D+ ++N Y + N N ++
Sbjct: 3 TVTWTK-TGTQYEVSSKQHLLQIMHKGALYTDLGDPPAEYWSE--SYLQTTDIDLIDDHENITPIGVSIGSITSDSFQGEYDGGCHAISNWSFASGTDTYFAGLFATVSGTLKHVRLDGVWTLSGSAKYNGFLCGY------------STSTATILDIEADFSTGTIL---EFSGEIT--------GVLFGRARGDVYGV-TLRGSI--YCTGSSTTCAGGVCGYGYYSSMT-MIRNLAIFPNGISGLSVGGIAGSA--HRTSLTRCVNAMIGDMHGTYRCGGIIGD------GSQMSKDCKNVVXXXXXXXXXXXXXXXXMGRFATY-NSSSDFTEWMNYMSGNITSM--TLSCGGIIGTAVDHDTATYYPSLSNSLVAMNGSVDHAVVG-DGDTLPLVGVLVDTSFGMTYTSHDYPSDTPLEG----YTTDTVFTALPYIPLSGTDSDGTVYEWDFIFANLAG--NASYADYTHLSLHTGDVQAPFYADLDLPDNNAMTYLAYANIDNNSL 467
BLAST of mRNA_P-littoralis_Contig673.30.1 vs. uniprot
Match: B5LWE4_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWE4_9PHYC) HSP 1 Score: 189 bits (481), Expect = 6.140e-48 Identity = 146/453 (32.23%), Postives = 232/453 (51.21%), Query Frame = 1
Query: 4 VTWTQDANSNYEVSSAEHLKQIMHKGTLYTDAGSMPTDYWSAGTNYTQTADIDLLNDSTNIEPIGISADPFMGDYDGGEFSISNWSYIDPEFST--LNECGSDIGLFGH----CTSNALKKSGSMVYGHYRGLAQRLVSWLETYWKSIIRCNTGCGTSSVTSRTDLSSTQTS*PGLTYLGGVIGTARCPYANVITLRGSVDFLAATHSSYNSGGIFGTLRNEQTTSMIPNLATSPSGINGTNVGGIAGQLTLEKGGLTGWVNAMIGNISGLIWSGGLIGRCFAYSGTDPMATLVNSMTGNITIGVTPNASLDTGVG---GIMGYLYSAAVNTHFMNYMSGDRISLESTAFVGGILGQGGSASGEITSSMNAMNDNVENAIVGNDAGNISFSTTTRNTAFGLTYNVDTTTPVDPTD-----VLYPTDFMDLPYVVISATSPDAIDYDFDFIFAN 1320
VTW + +S YEVSS EHL Q+MH G+LYT+ GS+P+++ SA ++ QT +IDL ND TNI+PIG+S D F G YDG SI NWSY F T ++ + +GLFG+ C ++ +G + L+ + + S I G S+ + D+ + G + +GGV+G +TL G +D + + + + G +++ NLA S + G NVGG+ G + +T +NAM G++ +++GG+ G+ + + LVNSM G+I + TG G GI+GYLYS+ + ++NYMSGD +S ++ G I+GQ +A T+++NAM + +A + D G +T FGLTY +T + T L P LP + ++ T +++ YD++F+F N
Sbjct: 3 VTWVLNGDSKYEVSSKEHLHQLMHNGSLYTNEGSVPSNFMSA--DFVQTVEIDLENDDTNIQPIGLSDDSFKGSYDGANLSIKNWSYTATGFDTGSTDDFLAYVGLFGYVFHPCVLKNIRMTGVCTLRGFTTFGGILLGYSNSATISNIDLELDEG--SLIEQGDVPN------GYSNMGGVVGQLAGGSMYGVTLSGELDVVPGPNMATQAVGCVIGYAGNTIVTLVRNLAKFTSTVTGYNVGGVFGDSSAVT--ITKVLNAMEGSLLAAMFAGGIFGKLRTTGSSQVVGELVNSMNGDIEV---------TGAGFCAGIVGYLYSSLNHDKWLNYMSGDIVSAVASRSAG-IIGQRVAADYTFTNTLNAMKGSTYHAGLPYDHGETMVYI---DTEFGLTYTDSLSTALFSTMDTSAFTLDPE--TSLPVIALTGTDSESVAYDWEFVFGN 428
BLAST of mRNA_P-littoralis_Contig673.30.1 vs. uniprot
Match: Q6XM36_9PHYC (FirrV-1-A51 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM36_9PHYC) HSP 1 Score: 183 bits (465), Expect = 8.090e-46 Identity = 153/454 (33.70%), Postives = 222/454 (48.90%), Query Frame = 1
Query: 1 TVTWTQDANSNYEVSSAEHLKQIMHKGTLYTDAGSMPTDYWSAGTNYTQTADIDLLNDSTNIEPIGISADPFMGDYDGGEFSISNWSYIDPEFSTLNECGSDIGLFGHCTSNALKKSGSMVYGHY--RGLAQR---LVSWLETYWKSIIRCNTGCGTS----SVTSRTDLSSTQTS*PGLTYLGGVIGTARCPYANVITLRGSVDFLAATHSSYNS-GGIFGTLRNEQTTSMIPNLATSPSGINGTNVGGIAGQLTLEKGGLTGWVNAMIGNISGLIWSGGLIGRCFAYSGTDPMATLVNSMTGNIT-IGVTPNASLDTGVGGIMGYLYSAAVNTH--FMNYMSGDRISLESTAFVGGILGQGGSASGEITSSMNAMNDNVENAIVGNDAGNISFSTTTRNTAFGLTYNVDTTTPVDPTDVLYPTDFMDLPYVVISATSPDAIDYDFDFIFANL 1323
T+TW +D+NS YEVSS EHL QIM+ GTLYT+AG+ P D+W +Y QT DID ++STN+ PI + F G YDG + I N+SY DPEF+T N C + GLFG+ A + + G + +G+ L + + I C+ G+S S+TS T +GGVIG ITL G V + + ++ GGI G+ + +++ NLAT PS + G VGG+ G+ ++ +NAM G+I G +GG+IG + + + LV SM GNIT +G NA GG+ G + +T+ +NYM+GD G + + +SM AMN V+ A V D G + + +FGLTY +D D L LPY ++ T Y ++F+F NL
Sbjct: 5 TITWVRDSNSKYEVSSKEHLLQIMNNGTLYTNAGTSPGDFWRV--DYIQTTDIDFASNSTNVVPI----EKFKGTYDGDNYEIRNYSYEDPEFNTANNCINFAGLFGYVLGAAAEVKNLKLTGRWNVKGVHSSGGLLAGYCYISKVANITCSLDAGSSIEQDSITSDT-----------YPKVGGVIGQTDTATVQGITLEGEVSVICSPSATRAYVGGIIGSANSNSVVTLLRNLATFPSTLKGGEVGGVIGRCQFATS-ISKCLNAMTGDIEGDTLAGGVIGMGQTGNNSQVLDYLVCSMRGNITPVG---NAR----AGGVFGGIQYENDHTYTTLLNYMTGDIXXXXXXXXXXXXTG----TTYSVNTSMVAMNGYVKFAAVFEDPGIVIAHV---DPSFGLTYTIDHGITTDALSGLPIDSESILPYFDLTGTDNYGTSYAWEFVFGNL 426
BLAST of mRNA_P-littoralis_Contig673.30.1 vs. uniprot
Match: Q8QNM5_ESV1K (EsV-1-39 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNM5_ESV1K) HSP 1 Score: 119 bits (299), Expect = 1.750e-24 Identity = 70/219 (31.96%), Postives = 126/219 (57.53%), Query Frame = 3
Query: 1503 ILTVEARAINVPVTIVEVSGAVGYNITY---QAPTGPEVTVLSGVTTLEHNITGLEPNSEYTIKLYA---DTGTGYGLVEELTVTTLPNVASNYDVTDFTLD-GVIKLSNLTDSAVANITDVMNELFNTGDIVNISIQGDPDVDTSFIKLGETLSISEINGVLLPFEEASGTGQVVSVILSDGSTTEIDYDDTVDSIVVSGITYFPGDTFIPDGQKVRV 2138
+++V R +++ +T VSGA Y + Y + + T + T L H++ L + Y++ Y DT + +T LPNVASN+DV+ + + G L L+ +++ + DV+N++F+TGD V +S++G + T F+K G+T +I + + +PF ++G GQ V++ L+D +T + YDDT +++++ G TY GD+ + DGQKV +
Sbjct: 393 LVSVVPRPMSIDLTWPAVSGATAYGVKYSVGEMDAEAKTTSAASTTALRHSVRNLLSQTLYSVYTYYSMDDTDPSVPMSSGQYLT-LPNVASNHDVSSYADERGGFDLRGLSTESLSALDDVLNDIFSTGDSVTLSLRGKGETKTKFVKRGDTAAIDDGVSIAMPFSASAGPGQSVTLALTDATTVAVAYDDTTEAVLIGGTTYAAGDSLVLDGQKVTI 610
BLAST of mRNA_P-littoralis_Contig673.30.1 vs. uniprot
Match: B5LWG3_9PHYC (Putative LamG-like jellyroll protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWG3_9PHYC) HSP 1 Score: 96.7 bits (239), Expect = 1.390e-17 Identity = 67/192 (34.90%), Postives = 104/192 (54.17%), Query Frame = 3
Query: 1572 YNITYQAPTGPEVTVLSGVTTLEHNITGLEPNSEYTIKLYADTG-TGYGLVEELTVTTLPNVASNYDVTDFTLDGVIKLSNLTDSAVANITDVMNELFNTGDIVNISIQGDPDVDTSFIKL--GETLSISEINGVLLPFEEASGTGQVVSVILSDGSTTEIDYDDTVDSIVVSGITYFPGDTFIPDGQKVRV 2138
Y IT + +G E+T + T+ + L P++ YT +LY T Y L VTTL + +N +++ F +GV S L ++ + + ++E+ TGD +I I D + +F + G T I + +LL F + G+ Q ++ LSD + I YDD+V+SIVV GIT F G+TFI DG+KV V
Sbjct: 228 YRITQEVASGGEITSVDATTSTTSIVYNLTPSTTYTFRLYRSTDDVNYTLDRSEDVTTLDDTPANSNMSIFLTNGVYNFSQLEETTQEILKNHIDEILVTGD--SIIIDNDEFDNQAFFAVARGTTSEIPDSKPILLLFNPSKGSSQSATLELSDATNVIITYDDSVNSIVVDGITRFVGETFILDGKKVSV 417
BLAST of mRNA_P-littoralis_Contig673.30.1 vs. uniprot
Match: D7G320_ECTSI (EsV-1-159 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G320_ECTSI) HSP 1 Score: 61.6 bits (148), Expect = 2.230e-6 Identity = 45/149 (30.20%), Postives = 76/149 (51.01%), Query Frame = 3
Query: 1482 CTDEIVSILTVEARAINVPV---------TIVEVSGAV---------GYNITYQAPTGPEVTVLSGVTTLEHNITGLEPNSEYTIKLYADTGTGYGLVEELTVTTLPNVASNYDVTDFTLDGVIKLSNLTDSAVANITDVMNELFNTGD 1874
C ++V + A+ +++ + TI E+ GA+ G + T T ++T + VT +I L+ + Y + LYA G+GY +V+ + TL NVAS+Y V+D+ G LS L + + +++VMNELF TG+
Sbjct: 202 CNSDLVQTFVITAKQVSIVLSPRVTRIRATIAEIDGALSCRVVVGEEGADSTMATVTHDDITGI--VTDRTVDIKNLQAETTYHVTLYASFGSGYEVVQTSSTQTLANVASSYSVSDYGAAGAYDLSALGQAELDGVSEVMNELFATGE 348 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig673.30.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig673.30.1 >prot_P-littoralis_Contig673.30.1 ID=prot_P-littoralis_Contig673.30.1|Name=mRNA_P-littoralis_Contig673.30.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=282bp MIPNLATSPSGINGTNVGGIAGQLTLEKGGLTGWVNAMIGNISGLIWSGGback to top mRNA from alignment at P-littoralis_Contig673:75799..77939+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig673.30.1 ID=mRNA_P-littoralis_Contig673.30.1|Name=mRNA_P-littoralis_Contig673.30.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2141bp|location=Sequence derived from alignment at P-littoralis_Contig673:75799..77939+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig673:75799..77939+ >mRNA_P-littoralis_Contig673.30.1 ID=mRNA_P-littoralis_Contig673.30.1|Name=mRNA_P-littoralis_Contig673.30.1|organism=Pylaiella littoralis U1_48|type=CDS|length=846bp|location=Sequence derived from alignment at P-littoralis_Contig673:75799..77939+ (Pylaiella littoralis U1_48)back to top |