mRNA_P-littoralis_Contig673.27.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig673.27.1
Unique NamemRNA_P-littoralis_Contig673.27.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig673.27.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig673contigP-littoralis_Contig673:71120..72758 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1639
Hectar predicted targeting categoryother localisation
Exons1
Cds size1203
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791402.6259758-UTR-P-littoralis_Contig673:71119..712591680791402.6259758-UTR-P-littoralis_Contig673:71119..71259Pylaiella littoralis U1_48UTRP-littoralis_Contig673 71120..71259 +
1680791402.6520388-UTR-P-littoralis_Contig673:72462..727581680791402.6520388-UTR-P-littoralis_Contig673:72462..72758Pylaiella littoralis U1_48UTRP-littoralis_Contig673 72463..72758 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791402.640462-CDS-P-littoralis_Contig673:71259..724621680791402.640462-CDS-P-littoralis_Contig673:71259..72462Pylaiella littoralis U1_48CDSP-littoralis_Contig673 71260..72462 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig673.27.1prot_P-littoralis_Contig673.27.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig673 71260..72462 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig673.27.1

>prot_P-littoralis_Contig673.27.1 ID=prot_P-littoralis_Contig673.27.1|Name=mRNA_P-littoralis_Contig673.27.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=401bp
MVESYKCESANHKNRLPPPLRSLSHFKAKMSQHVVHFLGFMGLVETIVEF
VYTFALRKDFTSFEWIFFLADRSCEMLGEVFAVFLGGRHVVQKYHRNVNV
VDMFGVALKDPIHNMAYPHPSSEEPDLGLLSAASTGITVSNLSIFFWAIF
FPFWGDFQGEEVARVLLSTLSCLFIVGVLVVNAVDVLRIEARGETREVST
VSDGTWICAFSAKYALRKAFGVYLLISNSDRLAPDDLGYALIGSHVLEYV
SVLFVFLKALITDVYDGVAAEIPGHIGGWCFDILRVCPHCMRSFLRCFRP
KEGPRIAGSELGFALEQHCLRGHWGGSRVSKVIGVSGVPRVHSFSGFPTD
VGVISPQQRVARAHSFPGAHSLNRMRKMRAQEEKEERAILELRRQMRVQE
*
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mRNA from alignment at P-littoralis_Contig673:71120..72758+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig673.27.1 ID=mRNA_P-littoralis_Contig673.27.1|Name=mRNA_P-littoralis_Contig673.27.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1639bp|location=Sequence derived from alignment at P-littoralis_Contig673:71120..72758+ (Pylaiella littoralis U1_48)
TTCTCCGAGGGATTTGCTCGCAGAAGACAACTGCTGCTGCTGCAGAGACG
CCAGCCAGCCATGATTGGCGGCCCGTGGTACCACTACTCTGCTAGGAACT
CACGAGGGGTCATGATGTCTTCATTCTTGGAGCTCCCACCATGGTAGAAA
GCTACAAGTGTGAAAGTGCGAATCACAAAAATCGCTTACCCCCCCCCCTT
CGCTCACTCTCACATTTCAAGGCCAAAATGTCTCAGCATGTCGTGCATTT
TCTTGGTTTCATGGGACTTGTCGAGACCATCGTGGAGTTCGTGTACACAT
TCGCCCTACGTAAGGACTTCACTTCATTTGAGTGGATCTTCTTCCTCGCA
GATAGGTCATGTGAAATGCTCGGAGAAGTCTTTGCTGTTTTCCTGGGCGG
GCGGCATGTAGTGCAGAAATACCATCGTAACGTCAATGTTGTCGACATGT
TTGGGGTTGCCCTGAAGGATCCGATTCACAATATGGCATACCCACATCCA
TCCAGTGAAGAGCCAGACTTGGGCCTGCTTTCAGCCGCGTCTACGGGTAT
TACGGTGTCGAATCTCTCGATATTTTTCTGGGCGATATTCTTCCCGTTTT
GGGGCGACTTCCAGGGCGAAGAGGTCGCTAGAGTACTCCTTAGTACGCTG
TCTTGTTTGTTTATCGTGGGAGTGCTGGTGGTGAATGCTGTGGATGTCTT
GAGAATTGAAGCAAGAGGAGAAACGAGGGAAGTTTCTACAGTTTCTGACG
GGACTTGGATATGTGCTTTCTCCGCCAAGTATGCTCTGCGCAAAGCTTTC
GGAGTATACCTCCTGATTTCCAACTCTGACCGACTAGCGCCCGATGATTT
GGGGTATGCACTCATCGGATCCCATGTATTAGAATATGTGTCGGTGTTGT
TTGTATTTTTGAAAGCGTTGATCACCGACGTGTACGATGGTGTAGCGGCC
GAAATACCTGGCCATATTGGAGGGTGGTGTTTCGACATCCTCAGGGTTTG
TCCTCACTGTATGAGGAGCTTCTTGAGATGTTTTCGCCCCAAAGAGGGAC
CGCGCATCGCTGGGTCAGAGTTAGGGTTCGCTCTTGAACAACATTGTCTT
CGAGGACATTGGGGTGGTAGCAGGGTTAGCAAGGTTATCGGGGTTAGTGG
AGTCCCTCGAGTGCATTCATTCTCTGGATTCCCTACAGACGTCGGAGTAA
TTTCCCCGCAACAACGTGTCGCTCGAGCCCATTCATTCCCTGGAGCCCAT
TCACTCAACAGGATGCGTAAGATGCGTGCTCAAGAAGAGAAAGAGGAGCG
TGCAATTCTGGAACTTCGAAGGCAGATGCGTGTTCAGGAATGATGCGTGT
TGAAGACCTTATAGGTGACGGAATCACAAATGTCGTCGAGCAGGGTTACC
GGGAGAAGAAAAGAGAGAGGAGATGGTGGTGGTGGTTCTCTTGAGAAATG
GAGAATTTGGAGAATTTCTCGGGGCACGCTTGCTCGATGAAAGACGCGGA
GTTTTTTCGGGACCACATGGATTCGAGTTCTTCCCACAAGACACACGAGC
CTGCTTACCGGGACCATTGTCAAAGAAGTCACAGAAGAATACACCTCTCA
GACGTGTACAAGATGTGGAAACATCAAGTCAGACTTGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig673:71120..72758+

>mRNA_P-littoralis_Contig673.27.1 ID=mRNA_P-littoralis_Contig673.27.1|Name=mRNA_P-littoralis_Contig673.27.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1203bp|location=Sequence derived from alignment at P-littoralis_Contig673:71120..72758+ (Pylaiella littoralis U1_48)
ATGGTAGAAAGCTACAAGTGTGAAAGTGCGAATCACAAAAATCGCTTACC
CCCCCCCCTTCGCTCACTCTCACATTTCAAGGCCAAAATGTCTCAGCATG
TCGTGCATTTTCTTGGTTTCATGGGACTTGTCGAGACCATCGTGGAGTTC
GTGTACACATTCGCCCTACGTAAGGACTTCACTTCATTTGAGTGGATCTT
CTTCCTCGCAGATAGGTCATGTGAAATGCTCGGAGAAGTCTTTGCTGTTT
TCCTGGGCGGGCGGCATGTAGTGCAGAAATACCATCGTAACGTCAATGTT
GTCGACATGTTTGGGGTTGCCCTGAAGGATCCGATTCACAATATGGCATA
CCCACATCCATCCAGTGAAGAGCCAGACTTGGGCCTGCTTTCAGCCGCGT
CTACGGGTATTACGGTGTCGAATCTCTCGATATTTTTCTGGGCGATATTC
TTCCCGTTTTGGGGCGACTTCCAGGGCGAAGAGGTCGCTAGAGTACTCCT
TAGTACGCTGTCTTGTTTGTTTATCGTGGGAGTGCTGGTGGTGAATGCTG
TGGATGTCTTGAGAATTGAAGCAAGAGGAGAAACGAGGGAAGTTTCTACA
GTTTCTGACGGGACTTGGATATGTGCTTTCTCCGCCAAGTATGCTCTGCG
CAAAGCTTTCGGAGTATACCTCCTGATTTCCAACTCTGACCGACTAGCGC
CCGATGATTTGGGGTATGCACTCATCGGATCCCATGTATTAGAATATGTG
TCGGTGTTGTTTGTATTTTTGAAAGCGTTGATCACCGACGTGTACGATGG
TGTAGCGGCCGAAATACCTGGCCATATTGGAGGGTGGTGTTTCGACATCC
TCAGGGTTTGTCCTCACTGTATGAGGAGCTTCTTGAGATGTTTTCGCCCC
AAAGAGGGACCGCGCATCGCTGGGTCAGAGTTAGGGTTCGCTCTTGAACA
ACATTGTCTTCGAGGACATTGGGGTGGTAGCAGGGTTAGCAAGGTTATCG
GGGTTAGTGGAGTCCCTCGAGTGCATTCATTCTCTGGATTCCCTACAGAC
GTCGGAGTAATTTCCCCGCAACAACGTGTCGCTCGAGCCCATTCATTCCC
TGGAGCCCATTCACTCAACAGGATGCGTAAGATGCGTGCTCAAGAAGAGA
AAGAGGAGCGTGCAATTCTGGAACTTCGAAGGCAGATGCGTGTTCAGGAA
TGA
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